Wall clock time and date at job start Mon Mar 30 2020 17:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47328 * 2 1 4 4 H 1.08996 * 109.46952 * 54.99786 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99727 * 3 2 1 6 6 C 1.52997 * 109.46817 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.47502 * 300.00518 * 6 5 3 8 8 C 1.52999 * 109.47317 * 179.97438 * 6 5 3 9 9 C 1.53006 * 109.47127 * 60.00361 * 6 5 3 10 10 C 1.52999 * 109.46626 * 299.99539 * 9 6 5 11 11 C 1.52996 * 109.47131 * 175.00092 * 3 2 1 12 12 H 1.09000 * 109.47380 * 59.99237 * 11 3 2 13 13 N 1.46905 * 109.46983 * 300.00080 * 11 3 2 14 14 C 1.46897 * 111.00157 * 155.00111 * 13 11 3 15 15 C 1.53006 * 109.47041 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47034 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00062 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00366 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99928 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47180 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46919 * 119.99875 * 20 18 16 23 23 H 1.48495 * 109.47258 * 239.99646 * 20 18 16 24 24 H 1.09002 * 109.46786 * 59.99989 * 1 2 3 25 25 H 1.09000 * 109.47264 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47521 * 300.00335 * 1 2 3 27 27 H 1.09001 * 109.46883 * 239.99398 * 2 1 3 28 28 H 1.09002 * 109.46786 * 120.00010 * 2 1 3 29 29 H 1.09002 * 109.47070 * 60.00180 * 5 3 2 30 30 H 1.08996 * 109.47407 * 299.99780 * 5 3 2 31 31 H 1.09001 * 109.47362 * 300.00732 * 8 6 5 32 32 H 1.09002 * 109.46716 * 60.00091 * 8 6 5 33 33 H 1.09000 * 109.47486 * 180.02562 * 8 6 5 34 34 H 1.08993 * 109.46955 * 60.00011 * 9 6 5 35 35 H 1.09000 * 109.47050 * 179.97438 * 9 6 5 36 36 H 1.09002 * 109.46719 * 180.02562 * 10 9 6 37 37 H 1.08993 * 109.47839 * 299.99931 * 10 9 6 38 38 H 1.00906 * 110.99817 * 278.95501 * 13 11 3 39 39 H 1.09000 * 109.47241 * 299.99901 * 14 13 11 40 40 H 1.09006 * 109.47335 * 59.99935 * 14 13 11 41 41 H 1.08997 * 109.46790 * 299.99997 * 15 14 13 42 42 H 1.09000 * 109.47173 * 60.00245 * 15 14 13 43 43 H 0.96996 * 120.00676 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 2.1459 3.5687 -1.3077 7 1 1.7118 4.1081 -0.4658 8 6 1.7418 4.2526 -2.6153 9 6 3.6708 3.5699 -1.1823 10 6 4.0755 2.8859 0.1251 11 6 3.5648 1.4442 0.1257 12 1 3.9995 0.9051 -0.7160 13 7 3.9534 0.7874 1.3810 14 6 5.3135 0.2399 1.2896 15 6 5.6819 -0.4341 2.6128 16 6 7.0774 -0.9952 2.5193 17 1 7.6447 -0.8828 1.6071 18 6 7.6297 -1.6531 3.5978 19 7 6.9388 -1.7905 4.7084 20 14 9.3592 -2.3493 3.4815 21 1 9.9186 -2.0631 2.1361 22 1 10.2168 -1.7198 4.5178 23 1 9.3174 -3.8176 3.6988 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.5490 2.1252 -1.3970 30 1 2.0700 1.5874 -2.1492 31 1 2.1763 3.7131 -3.4569 32 1 0.6555 4.2517 -2.7051 33 1 2.1060 5.2799 -2.6157 34 1 4.1050 3.0306 -2.0241 35 1 4.0346 4.5974 -1.1829 36 1 5.1618 2.8872 0.2147 37 1 3.6413 3.4252 0.9669 38 1 3.8706 1.4214 2.1615 39 1 5.3568 -0.4928 0.4838 40 1 6.0171 1.0469 1.0850 41 1 5.6387 0.2990 3.4183 42 1 4.9785 -1.2411 2.8178 43 1 7.3271 -2.2536 5.4670 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308945093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:59 Heat of formation + Delta-G solvation = -51.240045 kcal Electronic energy + Delta-G solvation = -17699.641921 eV Core-core repulsion = 15163.457734 eV Total energy + Delta-G solvation = -2536.184188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.40025 -35.49305 -34.14241 -32.96742 -31.07105 -29.06312 -28.34522 -25.59355 -23.82911 -23.42007 -21.12596 -20.67098 -20.08704 -19.55173 -16.32399 -15.61325 -14.95649 -14.45451 -14.41097 -14.36867 -13.95157 -13.48468 -13.33172 -12.97858 -12.77936 -12.52461 -12.11857 -11.99006 -11.91705 -11.43548 -11.21271 -11.11020 -10.92956 -10.87699 -10.78527 -10.67517 -10.50221 -10.25156 -10.14904 -9.91877 -9.82272 -9.27144 -9.08083 -8.33180 -7.65632 -5.97557 -3.99850 3.32386 3.39714 3.43840 4.44895 4.61510 4.69622 4.75337 4.98873 5.12627 5.23264 5.37947 5.38469 5.39915 5.48919 5.53074 5.60333 5.62696 5.68234 5.77253 5.85009 5.90064 5.93382 6.09853 6.12493 6.13582 6.20517 6.22362 6.31039 6.37311 6.40029 6.47013 6.58562 6.66810 6.79647 7.03537 7.57405 7.78324 7.88152 8.03616 8.13324 8.47274 9.07884 9.63918 11.13922 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.032832 B = 0.004663 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.630248 B = 6003.029310 C = 6579.606262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.072 4.072 4 H 0.065 0.935 5 C -0.109 4.109 6 C -0.093 4.093 7 H 0.067 0.933 8 C -0.146 4.146 9 C -0.109 4.109 10 C -0.149 4.149 11 C 0.092 3.908 12 H 0.070 0.930 13 N -0.684 5.684 14 C 0.067 3.933 15 C 0.025 3.975 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.334 0.666 39 H 0.056 0.944 40 H 0.014 0.986 41 H 0.013 0.987 42 H 0.024 0.976 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 10.051 -12.186 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.091 4.091 4 H 0.084 0.916 5 C -0.147 4.147 6 C -0.111 4.111 7 H 0.085 0.915 8 C -0.204 4.204 9 C -0.147 4.147 10 C -0.189 4.189 11 C -0.019 4.019 12 H 0.089 0.911 13 N -0.313 5.313 14 C -0.061 4.061 15 C -0.013 4.013 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.152 0.848 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.031 0.969 42 H 0.043 0.957 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.856 9.355 -12.165 19.392 hybrid contribution 1.581 0.455 0.091 1.648 sum -10.275 9.809 -12.074 18.643 Atomic orbital electron populations 1.21833 0.97010 1.00981 1.01059 1.21460 0.94270 0.96323 1.03055 1.21096 0.94932 0.96189 0.96848 0.91649 1.21705 1.00316 0.94713 0.97994 1.21152 0.95817 0.96441 0.97718 0.91472 1.21830 1.00910 1.00130 0.97509 1.21525 0.95233 1.00048 0.97871 1.22279 1.01085 0.97750 0.97738 1.21567 0.94681 0.91769 0.93868 0.91125 1.60672 1.27895 1.39067 1.03671 1.22151 0.85571 0.96833 1.01529 1.19070 0.96001 0.95719 0.90462 1.21227 0.99959 1.35656 0.99025 0.92787 1.24997 0.97703 0.96225 0.95436 1.69981 1.37075 1.42842 1.03396 0.86553 0.84738 0.78801 0.77998 1.19791 1.21058 1.20981 0.93325 0.93290 0.93119 0.92948 0.89839 0.91948 0.92230 0.92834 0.92929 0.93009 0.92171 0.92534 0.91984 0.92101 0.84807 0.92586 0.96818 0.96909 0.95711 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 37.16 0.36 -1.33 16 2 C -0.11 -1.49 5.32 -26.73 -0.14 -1.64 16 3 C -0.07 -0.90 1.90 -90.62 -0.17 -1.07 16 4 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 5 C -0.11 -1.16 4.24 -26.73 -0.11 -1.28 16 6 C -0.09 -0.93 2.72 -90.62 -0.25 -1.18 16 7 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 8 C -0.15 -1.26 9.19 37.16 0.34 -0.91 16 9 C -0.11 -1.19 5.20 -26.73 -0.14 -1.33 16 10 C -0.15 -1.95 5.17 -26.76 -0.14 -2.09 16 11 C 0.09 1.33 1.91 -67.74 -0.13 1.20 16 12 H 0.07 1.10 7.80 -51.93 -0.40 0.69 16 13 N -0.68 -12.07 5.40 -106.75 -0.58 -12.64 16 14 C 0.07 1.43 5.42 -3.82 -0.02 1.41 16 15 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 16 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.31 7.45 -51.93 -0.39 0.92 16 29 H 0.06 0.62 6.56 -51.93 -0.34 0.27 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.89 7.45 -51.93 -0.39 0.51 16 37 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 38 H 0.33 5.82 8.47 -39.29 -0.33 5.49 16 39 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 40 H 0.01 0.29 7.43 -51.93 -0.39 -0.10 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -29.18 329.91 -9.30 -38.48 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.46 Total: 0.17 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -0.96 Total: -21.38 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.16 Total: -39.10 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.18 -9.30 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308945093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.755 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds