Wall clock time and date at job start Mon Mar 30 2020 17:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46966 * 2 1 4 4 C 1.52992 * 109.47159 * 239.99425 * 2 1 3 5 5 N 1.46897 * 109.47400 * 65.00441 * 4 2 1 6 6 C 1.46891 * 111.00645 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47547 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99679 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00020 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00277 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99870 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47092 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47016 * 119.99680 * 11 9 7 14 14 H 1.48501 * 109.47000 * 239.99564 * 11 9 7 15 15 C 1.53006 * 109.46573 * 119.99545 * 2 1 3 16 16 C 1.52995 * 109.47265 * 294.14348 * 15 2 1 17 17 C 1.53003 * 109.47210 * 174.52318 * 16 15 2 18 18 C 1.52997 * 109.47078 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46948 * 299.99627 * 18 17 16 20 20 C 1.52995 * 109.47020 * 60.00473 * 19 18 17 21 21 C 1.52999 * 109.47336 * 294.52466 * 16 15 2 22 22 H 1.08998 * 109.47050 * 302.03128 * 1 2 3 23 23 H 1.09010 * 109.46666 * 62.02699 * 1 2 3 24 24 H 1.08994 * 109.47163 * 182.02222 * 1 2 3 25 25 H 1.08998 * 109.47489 * 185.00548 * 4 2 1 26 26 H 1.08997 * 109.47529 * 305.00264 * 4 2 1 27 27 H 1.00899 * 111.00195 * 303.95714 * 5 4 2 28 28 H 1.09008 * 109.47322 * 299.99899 * 6 5 4 29 29 H 1.09000 * 109.47338 * 59.99749 * 6 5 4 30 30 H 0.96997 * 119.99851 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.46999 * 174.14280 * 15 2 1 32 32 H 1.09001 * 109.46819 * 54.14477 * 15 2 1 33 33 H 1.09002 * 109.47330 * 54.52574 * 16 15 2 34 34 H 1.09002 * 109.46766 * 59.99910 * 17 16 15 35 35 H 1.09001 * 109.47131 * 300.00201 * 17 16 15 36 36 H 1.09004 * 109.46638 * 179.97438 * 18 17 16 37 37 H 1.08992 * 109.47738 * 60.00035 * 18 17 16 38 38 H 1.09002 * 109.46769 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47300 * 300.00155 * 19 18 17 40 40 H 1.09002 * 109.47344 * 59.99709 * 20 19 18 41 41 H 1.09001 * 109.47224 * 179.97438 * 20 19 18 42 42 H 1.08999 * 109.46980 * 59.99894 * 21 16 15 43 43 H 1.09002 * 109.46999 * 300.00310 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6516 0.0372 -2.4456 6 6 2.1259 -0.6267 -3.6670 7 6 1.7100 0.1790 -4.8707 8 1 1.1490 1.0927 -4.7413 9 6 2.0448 -0.2509 -6.1373 10 7 2.7276 -1.3639 -6.2949 11 14 1.5287 0.7475 -7.6294 12 1 0.7755 1.9478 -7.1853 13 1 2.7359 1.1709 -8.3833 14 1 0.6639 -0.0830 -8.5056 15 6 2.0399 -0.7212 1.2494 16 6 1.6536 0.0801 2.4942 17 6 2.0421 -0.7063 3.7478 18 6 1.6552 0.0947 4.9926 19 6 2.3901 1.4367 4.9843 20 6 2.0016 2.2231 3.7307 21 6 2.3889 1.4218 2.4855 22 1 -0.3633 0.5450 0.8712 23 1 -0.3633 0.4821 -0.9077 24 1 -0.3633 -1.0270 0.0363 25 1 3.1263 -0.7997 -1.2054 26 1 1.6054 -1.7199 -1.2950 27 1 0.6530 0.1792 -2.4753 28 1 3.2129 -0.7040 -3.6399 29 1 1.6923 -1.6248 -3.7299 30 1 2.9634 -1.6661 -7.1859 31 1 3.1249 -0.8130 1.1986 32 1 1.5935 -1.7141 1.3033 33 1 0.5778 0.2553 2.4941 34 1 3.1180 -0.8815 3.7479 35 1 1.5184 -1.6622 3.7540 36 1 1.9316 -0.4658 5.8857 37 1 0.5794 0.2696 4.9924 38 1 2.1148 2.0071 5.8713 39 1 3.4660 1.2618 4.9846 40 1 0.9257 2.3979 3.7304 41 1 2.5248 3.1793 3.7249 42 1 2.1121 1.9820 1.5924 43 1 3.4647 1.2466 2.4856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308993278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:29 Heat of formation + Delta-G solvation = -69.891606 kcal Electronic energy + Delta-G solvation = -17294.383729 eV Core-core repulsion = 14757.390749 eV Total energy + Delta-G solvation = -2536.992980 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01862 -37.95616 -35.67312 -34.11658 -31.74458 -31.42440 -28.83802 -27.41436 -25.72165 -23.64941 -23.39044 -22.11417 -20.72419 -20.31378 -18.58588 -16.98021 -16.59581 -16.25407 -15.82207 -15.26635 -15.07909 -14.84602 -14.70405 -14.48677 -14.09730 -13.80956 -13.36342 -13.24441 -13.00377 -12.84466 -12.70406 -12.67132 -12.46887 -12.16683 -11.94749 -11.92880 -11.79337 -11.57598 -11.44565 -11.28236 -11.07141 -10.76855 -10.68986 -10.64108 -9.12056 -8.24150 -6.35996 1.40409 1.41434 1.55679 2.39279 3.08860 3.50601 3.80971 3.90723 3.93105 4.06555 4.18926 4.25382 4.37253 4.47068 4.60407 4.66618 4.68983 4.71801 4.74509 4.78741 4.87226 4.88984 5.03201 5.05352 5.08782 5.11399 5.21472 5.22255 5.25858 5.32133 5.33252 5.40282 5.46206 5.48098 5.51303 5.59791 5.66265 5.71641 6.01000 6.44646 6.72595 6.88631 7.35350 8.87936 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.054100 B = 0.003621 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.432835 B = 7731.824574 C = 7903.235950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.074 0.926 4 C 0.063 3.937 5 N -0.689 5.689 6 C 0.206 3.794 7 C -0.536 4.536 8 H 0.065 0.935 9 C -0.001 4.001 10 N -0.935 5.935 11 Si 0.977 3.023 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.276 1.276 15 C -0.103 4.103 16 C -0.080 4.080 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.117 4.117 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.011 0.989 27 H 0.335 0.665 28 H -0.003 1.003 29 H -0.042 1.042 30 H 0.266 0.734 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 3.869 22.507 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.092 0.908 4 C -0.067 4.067 5 N -0.320 5.320 6 C 0.079 3.921 7 C -0.575 4.575 8 H 0.083 0.917 9 C -0.199 4.199 10 N -0.576 5.576 11 Si 0.800 3.200 12 H -0.185 1.185 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.141 4.141 16 C -0.098 4.098 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.155 4.155 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.153 0.847 28 H 0.015 0.985 29 H -0.024 1.024 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.752 4.179 22.418 22.970 hybrid contribution -0.423 -0.754 -1.225 1.500 sum -3.176 3.425 21.193 21.702 Atomic orbital electron populations 1.21852 0.94797 1.01619 1.01904 1.21108 0.96281 0.99909 0.92568 0.90800 1.22026 0.99357 0.94363 0.90907 1.60578 1.19024 1.50473 1.01960 1.19213 0.93967 0.91198 0.87770 1.21587 1.35489 1.08894 0.91492 0.91683 1.26013 0.94948 0.96301 1.02639 1.70107 1.40098 1.23632 1.23714 0.85231 0.78124 0.78620 0.77984 1.18538 1.20290 1.20172 1.21601 1.00494 0.98756 0.93266 1.21128 1.00372 0.94734 0.93574 1.21581 1.01107 0.98379 0.94073 1.21521 1.00382 0.96007 0.97554 1.21537 1.00186 0.96201 0.97683 1.21536 1.01294 0.98305 0.94443 1.21643 0.99887 0.95939 0.98018 0.90796 0.93508 0.93051 0.93108 0.97046 0.84700 0.98482 1.02424 0.92563 0.92562 0.91981 0.90782 0.92419 0.91883 0.91453 0.91920 0.91406 0.92365 0.91949 0.91994 0.92496 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.74 71.98 0.63 -3.04 16 2 C -0.08 -2.25 2.47 -10.79 -0.03 -2.28 16 3 H 0.07 2.19 6.33 -2.39 -0.02 2.17 16 4 C 0.06 2.36 5.14 86.30 0.44 2.80 16 5 N -0.69 -31.21 6.49 -517.96 -3.36 -34.57 16 6 C 0.21 11.61 5.44 85.56 0.47 12.08 16 7 C -0.54 -31.62 9.32 25.60 0.24 -31.38 16 8 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 9 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 10 N -0.94 -57.81 13.29 21.45 0.28 -57.53 16 11 Si 0.98 45.03 29.54 68.60 2.03 47.05 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 C -0.10 -2.38 4.14 30.59 0.13 -2.25 16 16 C -0.08 -1.51 2.07 -10.79 -0.02 -1.53 16 17 C -0.11 -1.88 5.20 30.59 0.16 -1.72 16 18 C -0.12 -1.66 5.92 30.59 0.18 -1.48 16 19 C -0.12 -1.70 5.92 30.59 0.18 -1.51 16 20 C -0.12 -1.91 5.92 30.61 0.18 -1.73 16 21 C -0.12 -2.28 4.98 30.61 0.15 -2.13 16 22 H 0.07 1.55 6.57 -2.39 -0.02 1.54 16 23 H 0.05 1.30 6.59 -2.38 -0.02 1.29 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.33 14.32 6.94 -89.69 -0.62 13.69 16 28 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 29 H -0.04 -2.53 8.14 -2.39 -0.02 -2.55 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.39 6.40 -2.39 -0.02 1.37 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 1.23 6.46 -2.39 -0.02 1.22 16 43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -64.04 327.05 2.44 -61.60 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.32 Total: 17.21 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 3.17 Total: -33.77 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -3.08 Total: -92.10 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.04 2.44 -61.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308993278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.290 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds