Wall clock time and date at job start Mon Mar 30 2020 17:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47418 * 2 1 4 4 N 1.46903 * 109.47298 * 119.99924 * 2 1 3 5 5 C 1.46907 * 110.99659 * 274.99943 * 4 2 1 6 6 C 1.52998 * 109.46996 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47544 * 300.00022 * 6 5 4 8 8 C 1.53007 * 109.46879 * 60.00319 * 6 5 4 9 9 C 1.52997 * 109.47129 * 179.97438 * 6 5 4 10 10 C 1.50697 * 109.47434 * 179.97438 * 9 6 5 11 11 H 1.08002 * 119.99940 * 0.02562 * 10 9 6 12 12 C 1.37880 * 120.00318 * 180.02562 * 10 9 6 13 13 N 1.31512 * 119.99665 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00035 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47134 * 89.99965 * 14 12 10 16 16 H 1.48499 * 109.46815 * 210.00298 * 14 12 10 17 17 H 1.48498 * 109.47059 * 329.99842 * 14 12 10 18 18 C 1.53004 * 109.47366 * 239.99587 * 2 1 3 19 19 C 1.52997 * 115.55181 * 205.58426 * 18 2 1 20 20 C 1.53003 * 117.51219 * 351.28550 * 18 2 1 21 21 C 1.52993 * 117.49560 * 59.91119 * 18 2 1 22 22 H 1.08999 * 109.46950 * 60.00565 * 1 2 3 23 23 H 1.08995 * 109.46822 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46930 * 299.99873 * 1 2 3 25 25 H 1.00898 * 110.99885 * 38.94857 * 4 2 1 26 26 H 1.08998 * 109.46820 * 299.99881 * 5 4 2 27 27 H 1.08998 * 109.47197 * 59.99868 * 5 4 2 28 28 H 1.09005 * 109.47086 * 59.99387 * 7 6 5 29 29 H 1.08997 * 109.47408 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46697 * 300.00373 * 7 6 5 31 31 H 1.08995 * 109.47220 * 59.99892 * 8 6 5 32 32 H 1.09001 * 109.46553 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.46649 * 299.99209 * 8 6 5 34 34 H 1.09004 * 109.47568 * 300.00245 * 9 6 5 35 35 H 1.09004 * 109.46871 * 59.99774 * 9 6 5 36 36 H 0.97006 * 119.99736 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47153 * 299.91015 * 19 18 2 38 38 H 1.09001 * 109.46832 * 179.91206 * 19 18 2 39 39 H 1.09004 * 109.47261 * 59.91187 * 19 18 2 40 40 H 1.09000 * 117.49553 * 214.96932 * 20 18 2 41 41 H 1.09000 * 117.50386 * 359.97438 * 20 18 2 42 42 H 1.09001 * 117.50068 * 359.97438 * 21 18 2 43 43 H 1.09005 * 117.50009 * 145.00168 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5951 -0.5330 3.5745 7 6 1.6453 -1.6887 3.8954 8 6 3.9923 -1.0860 3.2862 9 6 2.6611 0.4203 4.7694 10 6 3.1654 -0.3241 5.9787 11 1 3.4144 -1.3723 5.9026 12 6 3.3090 0.3329 7.1824 13 7 3.0053 1.6091 7.2752 14 14 3.9348 -0.5898 8.6812 15 1 5.4157 -0.4965 8.7372 16 1 3.3542 0.0098 9.9095 17 1 3.5317 -2.0160 8.5885 18 6 2.0401 -0.7213 -1.2492 19 6 3.4339 -1.3411 -1.1305 20 6 1.0111 -1.4562 -2.1107 21 6 1.6341 -0.1509 -2.6095 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.4496 -1.4978 1.4101 26 1 2.7589 1.0463 2.1181 27 1 1.0871 0.6165 2.5525 28 1 1.5986 -2.3677 3.0440 29 1 2.0108 -2.2273 4.7697 30 1 0.6500 -1.2946 4.1007 31 1 4.6689 -0.2627 3.0577 32 1 4.3576 -1.6240 4.1610 33 1 3.9456 -1.7651 2.4349 34 1 3.3381 1.2435 4.5406 35 1 1.6660 0.8148 4.9748 36 1 3.1067 2.0714 8.1220 37 1 4.1614 -0.5599 -0.9103 38 1 3.6963 -1.8276 -2.0699 39 1 3.4369 -2.0774 -0.3267 40 1 1.3272 -2.3813 -2.5929 41 1 -0.0294 -1.4263 -1.7874 42 1 1.0033 0.7380 -2.6146 43 1 2.3600 -0.2171 -3.4200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309012493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:33 Heat of formation + Delta-G solvation = -0.796005 kcal Electronic energy + Delta-G solvation = -17951.441380 eV Core-core repulsion = 15417.444610 eV Total energy + Delta-G solvation = -2533.996770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.16888 -37.16499 -34.07051 -32.17416 -29.36128 -28.35230 -26.81470 -26.28620 -25.07122 -23.36804 -22.51905 -21.79678 -18.77383 -17.66721 -16.22643 -15.92351 -15.01587 -14.79875 -14.45112 -14.05106 -13.58514 -12.99889 -12.90132 -12.79606 -12.67060 -12.18167 -12.02280 -11.92214 -11.64903 -11.51426 -11.31519 -10.96485 -10.84221 -10.80747 -10.73486 -10.46327 -10.31859 -10.17885 -10.00760 -9.64355 -9.53584 -8.97167 -8.79161 -8.29395 -7.97222 -5.94023 -3.93935 3.34908 3.41362 3.44124 3.75146 4.39171 4.52162 4.75363 4.89846 4.99053 5.13432 5.32091 5.37615 5.41888 5.58212 5.68793 5.73179 5.77286 5.83478 5.89950 5.97021 6.03092 6.07906 6.09155 6.19492 6.26688 6.36640 6.38447 6.53549 6.57235 6.71145 6.84120 6.86954 7.25094 7.29341 7.30606 7.48984 7.72545 7.78315 7.89535 8.06629 8.51332 9.11581 9.68770 11.17696 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.049164 B = 0.004722 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.383424 B = 5928.019164 C = 6086.019340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.118 3.882 3 H 0.077 0.923 4 N -0.676 5.676 5 C 0.070 3.930 6 C -0.058 4.058 7 C -0.128 4.128 8 C -0.115 4.115 9 C 0.034 3.966 10 C -0.506 4.506 11 H 0.059 0.941 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.275 1.275 18 C -0.105 4.105 19 C -0.097 4.097 20 C -0.186 4.186 21 C -0.181 4.181 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.338 0.662 26 H 0.064 0.936 27 H 0.022 0.978 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.014 0.986 35 H 0.012 0.988 36 H 0.258 0.742 37 H 0.057 0.943 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 -4.706 -16.709 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.008 3.992 3 H 0.095 0.905 4 N -0.307 5.307 5 C -0.058 4.058 6 C -0.058 4.058 7 C -0.186 4.186 8 C -0.172 4.172 9 C -0.004 4.004 10 C -0.544 4.544 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.715 3.285 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.106 4.106 19 C -0.154 4.154 20 C -0.223 4.223 21 C -0.218 4.218 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.158 0.842 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.902 -4.483 -16.731 17.563 hybrid contribution -0.729 -0.166 1.104 1.333 sum -3.631 -4.649 -15.627 16.703 Atomic orbital electron populations 1.22613 0.97804 1.01953 1.01899 1.20949 0.91652 0.97231 0.89411 0.90468 1.60601 1.56649 1.09876 1.03537 1.22128 0.98658 0.94949 0.90084 1.20616 0.94897 0.96085 0.94221 1.21762 0.98665 0.97880 1.00252 1.21591 0.95902 0.99841 0.99905 1.19122 0.96799 0.93688 0.90785 1.21247 1.42757 0.96304 0.94116 0.92311 1.25014 0.95890 0.94836 0.98855 1.69970 1.49270 1.08994 1.25578 0.86670 0.79004 0.80026 0.82757 1.20787 1.21420 1.19950 1.21551 0.96387 1.01960 0.90669 1.21079 0.93145 1.00577 1.00622 1.23204 0.98879 0.95733 1.04467 1.23020 1.03822 0.97345 0.97641 0.92475 0.92205 0.92482 0.84209 0.91723 0.95992 0.94805 0.91807 0.94203 0.94243 0.92830 0.93843 0.96733 0.96992 0.93202 0.92438 0.94162 0.90956 0.89378 0.88591 0.89237 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 7.76 37.16 0.29 -1.77 16 2 C 0.12 1.47 2.85 -67.71 -0.19 1.27 16 3 H 0.08 1.03 7.80 -51.93 -0.40 0.63 16 4 N -0.68 -9.60 4.36 -106.72 -0.46 -10.07 16 5 C 0.07 1.21 4.45 -3.82 -0.02 1.19 16 6 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 7 C -0.13 -2.39 7.89 37.15 0.29 -2.10 16 8 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 9 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 10 C -0.51 -13.90 7.65 -34.44 -0.26 -14.16 16 11 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 14 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.11 -1.18 2.57 -154.51 -0.40 -1.57 16 19 C -0.10 -1.13 9.17 37.16 0.34 -0.79 16 20 C -0.19 -1.84 9.28 -26.73 -0.25 -2.09 16 21 C -0.18 -1.77 9.61 -26.74 -0.26 -2.03 16 22 H 0.06 0.57 7.07 -51.93 -0.37 0.20 16 23 H 0.06 0.64 6.96 -51.93 -0.36 0.28 16 24 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 25 H 0.34 4.74 6.51 -39.29 -0.26 4.48 16 26 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 27 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 28 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 29 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 33 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 39 H 0.07 0.91 7.65 -51.93 -0.40 0.51 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.91 5.85 -51.93 -0.30 0.61 16 42 H 0.09 0.84 7.60 -51.93 -0.39 0.44 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -28.37 326.78 -8.19 -36.57 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.91 Total: 1.19 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -0.46 Total: -23.02 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.27 Total: -36.34 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.37 -8.19 -36.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309012493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.773 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds