Wall clock time and date at job start Mon Mar 30 2020 17:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47139 * 2 1 4 4 H 1.08998 * 112.90677 * 316.24904 * 3 2 1 5 5 C 1.53786 * 113.61516 * 87.50214 * 3 2 1 6 6 C 1.53786 * 87.07999 * 139.97720 * 5 3 2 7 7 C 1.53779 * 87.08243 * 334.56942 * 6 5 3 8 8 H 1.08998 * 113.61452 * 270.79753 * 7 6 5 9 9 N 1.46905 * 113.61358 * 139.97951 * 7 6 5 10 10 C 1.46901 * 110.99870 * 104.50435 * 9 7 6 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46923 * 299.99733 * 11 10 9 13 13 C 1.52999 * 109.46998 * 59.99872 * 11 10 9 14 14 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 15 15 C 1.50701 * 109.46820 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00070 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 11 18 18 N 1.31518 * 119.99993 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00130 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47108 * 89.99504 * 19 17 15 21 21 H 1.48498 * 109.47097 * 209.99712 * 19 17 15 22 22 H 1.48499 * 109.46508 * 329.99366 * 19 17 15 23 23 H 1.09003 * 109.47242 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47097 * 299.99837 * 1 2 3 25 25 H 1.08999 * 109.47069 * 60.00314 * 1 2 3 26 26 H 1.09006 * 109.47092 * 239.99656 * 2 1 3 27 27 H 1.09004 * 109.47030 * 120.00130 * 2 1 3 28 28 H 1.09003 * 113.61047 * 25.43196 * 5 3 2 29 29 H 1.08995 * 113.69123 * 254.53946 * 5 3 2 30 30 H 1.08995 * 113.61240 * 220.01804 * 6 5 3 31 31 H 1.09006 * 113.68564 * 89.12830 * 6 5 3 32 32 H 1.00901 * 110.99869 * 340.55147 * 9 7 6 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 35 35 H 1.09002 * 109.47301 * 60.00027 * 12 11 10 36 36 H 1.09001 * 109.47017 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.47249 * 300.00302 * 12 11 10 38 38 H 1.09001 * 109.46999 * 60.00126 * 13 11 10 39 39 H 1.09001 * 109.46478 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.47197 * 299.99817 * 13 11 10 41 41 H 1.08993 * 109.47740 * 299.99810 * 14 11 10 42 42 H 1.09005 * 109.47573 * 59.99976 * 14 11 10 43 43 H 0.96999 * 120.00009 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4976 2.0842 -0.6943 5 6 2.1874 2.0437 1.4077 6 6 3.4888 2.6934 0.9084 7 6 3.5688 1.5553 -0.1228 8 1 4.1031 0.6763 0.2376 9 7 4.0218 1.9941 -1.4496 10 6 5.4160 1.5975 -1.6876 11 6 5.8512 2.0714 -3.0758 12 6 4.9516 1.4349 -4.1371 13 6 5.7337 3.5948 -3.1546 14 6 7.3035 1.6588 -3.3233 15 6 7.7319 2.1251 -4.6909 16 1 7.0379 2.6623 -5.3203 17 6 9.0103 1.8667 -5.1382 18 7 9.3840 2.2731 -6.3318 19 14 10.2111 0.9381 -4.0494 20 1 10.0919 -0.5187 -4.3111 21 1 11.5960 1.3831 -4.3479 22 1 9.8997 1.2120 -2.6234 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.3430 1.2977 2.1871 29 1 1.4090 2.7636 1.6602 30 1 4.2950 2.6756 1.6417 31 1 3.3440 3.6774 0.4623 32 1 3.9052 2.9903 -1.5602 33 1 6.0570 2.0514 -0.9317 34 1 5.4998 0.5122 -1.6309 35 1 3.9170 1.7291 -3.9605 36 1 5.2619 1.7721 -5.1261 37 1 5.0353 0.3495 -4.0809 38 1 6.3746 4.0483 -2.3984 39 1 6.0442 3.9324 -4.1434 40 1 4.6992 3.8891 -2.9780 41 1 7.9441 2.1126 -2.5673 42 1 7.3877 0.5735 -3.2670 43 1 10.2833 2.0911 -6.6467 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309088934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:48 Heat of formation + Delta-G solvation = -11.724871 kcal Electronic energy + Delta-G solvation = -17726.543681 eV Core-core repulsion = 15192.073000 eV Total energy + Delta-G solvation = -2534.470681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55030 -37.18851 -33.50322 -32.43511 -31.49762 -27.64643 -26.35129 -25.87543 -25.51865 -23.59465 -21.98330 -21.31910 -19.71188 -17.72398 -16.76104 -15.85509 -15.28387 -14.60273 -14.37590 -14.14853 -13.56572 -13.50629 -13.20265 -12.70344 -12.66726 -12.56901 -12.27836 -12.06640 -11.80509 -11.45914 -11.27420 -11.04636 -10.95130 -10.82198 -10.73465 -10.49291 -10.43184 -10.20764 -10.12584 -9.75507 -9.65183 -9.20842 -8.86177 -8.47665 -8.00666 -5.98027 -3.93970 3.33654 3.41120 3.44700 4.34818 4.50122 4.52730 4.66854 4.75192 4.97677 5.16220 5.19931 5.35175 5.40296 5.52504 5.60749 5.65150 5.70282 5.73012 5.78577 5.86892 5.90669 5.94500 6.02552 6.12742 6.21471 6.23589 6.32771 6.44308 6.46082 6.62855 6.74151 6.83004 7.11163 7.17671 7.23728 7.36273 7.39902 7.49999 7.70977 7.88004 8.62228 9.08066 9.65268 11.15142 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.038129 B = 0.004738 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.174839 B = 5908.612442 C = 5983.995050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.097 4.097 4 H 0.091 0.909 5 C -0.137 4.137 6 C -0.173 4.173 7 C 0.072 3.928 8 H 0.092 0.908 9 N -0.675 5.675 10 C 0.068 3.932 11 C -0.050 4.050 12 C -0.117 4.117 13 C -0.130 4.130 14 C -0.004 4.004 15 C -0.506 4.506 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.267 1.267 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.341 0.659 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.558 -1.513 14.635 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.116 4.116 4 H 0.110 0.890 5 C -0.175 4.175 6 C -0.212 4.212 7 C -0.040 4.040 8 H 0.110 0.890 9 N -0.305 5.305 10 C -0.061 4.061 11 C -0.050 4.050 12 C -0.175 4.175 13 C -0.187 4.187 14 C -0.042 4.042 15 C -0.544 4.544 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.703 3.297 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.192 1.192 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.161 0.839 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.030 0.970 42 H 0.028 0.972 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.653 -2.058 14.167 20.485 hybrid contribution 1.345 0.119 1.118 1.753 sum -13.308 -1.940 15.285 20.359 Atomic orbital electron populations 1.21744 0.96211 1.01147 1.01553 1.21461 0.95480 0.96186 1.01874 1.22745 0.96091 0.96533 0.96217 0.89048 1.22843 0.97628 0.99974 0.97021 1.23633 0.98197 0.99135 1.00248 1.23112 0.95658 0.97261 0.87920 0.88962 1.60466 1.22198 1.20566 1.27264 1.22144 0.86827 0.99880 0.97229 1.20424 0.97223 0.95006 0.92342 1.21609 0.97608 0.99228 0.99012 1.21774 0.98467 0.95679 1.02822 1.19627 0.91158 0.95769 0.97671 1.21149 0.98051 1.35883 0.99346 0.90434 1.25018 0.98178 0.95588 0.94811 1.69912 1.19160 1.47497 1.18021 0.86848 0.80562 0.80473 0.81783 1.20442 1.21589 1.19208 0.93183 0.93102 0.92763 0.91478 0.92473 0.90451 0.91746 0.91878 0.90174 0.83919 0.95994 0.91756 0.93667 0.92201 0.94277 0.94190 0.91202 0.94612 0.96991 0.97202 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.90 37.16 0.37 -0.92 16 2 C -0.11 -1.10 5.77 -26.73 -0.15 -1.26 16 3 C -0.10 -1.00 3.45 -89.81 -0.31 -1.31 16 4 H 0.09 1.01 8.13 -51.93 -0.42 0.58 16 5 C -0.14 -1.26 7.63 -25.91 -0.20 -1.45 16 6 C -0.17 -1.80 7.71 -25.92 -0.20 -2.00 16 7 C 0.07 0.85 3.71 -66.90 -0.25 0.60 16 8 H 0.09 1.13 7.85 -51.93 -0.41 0.73 16 9 N -0.67 -9.45 5.82 -105.86 -0.62 -10.06 16 10 C 0.07 1.12 4.51 -3.82 -0.02 1.11 16 11 C -0.05 -0.96 0.60 -154.51 -0.09 -1.06 16 12 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 13 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 14 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 15 C -0.51 -14.09 8.20 -34.44 -0.28 -14.37 16 16 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 17 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.91 -27.94 13.96 55.43 0.77 -27.17 16 19 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.53 7.84 -51.93 -0.41 0.12 16 28 H 0.08 0.67 7.90 -51.93 -0.41 0.26 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.83 7.83 -51.93 -0.41 0.42 16 32 H 0.34 4.64 6.26 -39.29 -0.25 4.39 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 1.09 8.13 -51.93 -0.42 0.66 16 35 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 36 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 40 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 41 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 42 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -29.01 327.66 -8.49 -37.50 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.19 Total: 0.70 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -0.73 Total: -23.17 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.16 Total: -37.23 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.01 -8.49 -37.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309088934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.779 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds