Wall clock time and date at job start Mon Mar 30 2020 17:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47139 * 2 1 4 4 H 1.08998 * 112.90677 * 316.24904 * 3 2 1 5 5 C 1.53786 * 113.61516 * 87.50214 * 3 2 1 6 6 C 1.53786 * 87.07999 * 139.97720 * 5 3 2 7 7 C 1.53779 * 87.08243 * 334.56942 * 6 5 3 8 8 H 1.08998 * 113.61452 * 270.79753 * 7 6 5 9 9 N 1.46905 * 113.61358 * 139.97951 * 7 6 5 10 10 C 1.46901 * 110.99870 * 104.50435 * 9 7 6 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46923 * 299.99733 * 11 10 9 13 13 C 1.52999 * 109.46998 * 59.99872 * 11 10 9 14 14 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 15 15 C 1.50701 * 109.46820 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00070 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 11 18 18 N 1.31518 * 119.99993 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00130 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47108 * 89.99504 * 19 17 15 21 21 H 1.48498 * 109.47097 * 209.99712 * 19 17 15 22 22 H 1.48499 * 109.46508 * 329.99366 * 19 17 15 23 23 H 1.09003 * 109.47242 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47097 * 299.99837 * 1 2 3 25 25 H 1.08999 * 109.47069 * 60.00314 * 1 2 3 26 26 H 1.09006 * 109.47092 * 239.99656 * 2 1 3 27 27 H 1.09004 * 109.47030 * 120.00130 * 2 1 3 28 28 H 1.09003 * 113.61047 * 25.43196 * 5 3 2 29 29 H 1.08995 * 113.69123 * 254.53946 * 5 3 2 30 30 H 1.08995 * 113.61240 * 220.01804 * 6 5 3 31 31 H 1.09006 * 113.68564 * 89.12830 * 6 5 3 32 32 H 1.00901 * 110.99869 * 340.55147 * 9 7 6 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 35 35 H 1.09002 * 109.47301 * 60.00027 * 12 11 10 36 36 H 1.09001 * 109.47017 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.47249 * 300.00302 * 12 11 10 38 38 H 1.09001 * 109.46999 * 60.00126 * 13 11 10 39 39 H 1.09001 * 109.46478 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.47197 * 299.99817 * 13 11 10 41 41 H 1.08993 * 109.47740 * 299.99810 * 14 11 10 42 42 H 1.09005 * 109.47573 * 59.99976 * 14 11 10 43 43 H 0.96999 * 120.00009 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4976 2.0842 -0.6943 5 6 2.1874 2.0437 1.4077 6 6 3.4888 2.6934 0.9084 7 6 3.5688 1.5553 -0.1228 8 1 4.1031 0.6763 0.2376 9 7 4.0218 1.9941 -1.4496 10 6 5.4160 1.5975 -1.6876 11 6 5.8512 2.0714 -3.0758 12 6 4.9516 1.4349 -4.1371 13 6 5.7337 3.5948 -3.1546 14 6 7.3035 1.6588 -3.3233 15 6 7.7319 2.1251 -4.6909 16 1 7.0379 2.6623 -5.3203 17 6 9.0103 1.8667 -5.1382 18 7 9.3840 2.2731 -6.3318 19 14 10.2111 0.9381 -4.0494 20 1 10.0919 -0.5187 -4.3111 21 1 11.5960 1.3831 -4.3479 22 1 9.8997 1.2120 -2.6234 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.3430 1.2977 2.1871 29 1 1.4090 2.7636 1.6602 30 1 4.2950 2.6756 1.6417 31 1 3.3440 3.6774 0.4623 32 1 3.9052 2.9903 -1.5602 33 1 6.0570 2.0514 -0.9317 34 1 5.4998 0.5122 -1.6309 35 1 3.9170 1.7291 -3.9605 36 1 5.2619 1.7721 -5.1261 37 1 5.0353 0.3495 -4.0809 38 1 6.3746 4.0483 -2.3984 39 1 6.0442 3.9324 -4.1434 40 1 4.6992 3.8891 -2.9780 41 1 7.9441 2.1126 -2.5673 42 1 7.3877 0.5735 -3.2670 43 1 10.2833 2.0911 -6.6467 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309088934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:47 Heat of formation + Delta-G solvation = -27.958563 kcal Electronic energy + Delta-G solvation = -17727.247627 eV Core-core repulsion = 15192.073000 eV Total energy + Delta-G solvation = -2535.174627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47275 -38.67326 -34.98867 -33.91895 -32.73112 -29.58647 -27.92551 -27.03910 -26.44055 -24.87993 -23.48325 -22.24471 -20.62747 -19.27348 -18.86707 -16.92971 -16.43857 -16.03814 -15.71629 -15.33063 -15.00082 -14.95623 -14.44764 -14.23821 -13.95050 -13.65968 -13.44730 -13.27374 -12.93479 -12.76569 -12.73900 -12.52704 -12.25225 -12.17845 -12.08089 -12.04442 -11.73059 -11.51507 -11.37741 -11.26486 -10.96276 -10.89780 -10.70166 -10.62379 -9.10457 -8.21886 -6.22170 1.35584 1.36795 1.48022 2.39288 3.13068 3.31104 3.71381 3.85931 3.94518 4.05053 4.13167 4.27184 4.32431 4.43211 4.47719 4.67178 4.71238 4.76356 4.82828 4.86459 4.92680 4.95056 5.03972 5.07761 5.10277 5.11243 5.18419 5.22947 5.28201 5.36111 5.41421 5.44811 5.50013 5.52902 5.60392 5.67504 5.76388 5.82356 6.26292 6.42767 6.60483 6.85080 7.40328 8.94397 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.038129 B = 0.004738 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.174839 B = 5908.612442 C = 5983.995050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.093 4.093 4 H 0.086 0.914 5 C -0.126 4.126 6 C -0.170 4.170 7 C 0.063 3.937 8 H 0.089 0.911 9 N -0.676 5.676 10 C 0.082 3.918 11 C -0.050 4.050 12 C -0.108 4.108 13 C -0.123 4.123 14 C -0.003 4.003 15 C -0.504 4.504 16 H 0.044 0.956 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.941 3.059 20 H -0.271 1.271 21 H -0.288 1.288 22 H -0.250 1.250 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.344 0.656 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.027 0.973 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.035 0.965 40 H 0.065 0.935 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.589 -2.042 17.347 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.112 4.112 4 H 0.104 0.896 5 C -0.164 4.164 6 C -0.209 4.209 7 C -0.048 4.048 8 H 0.107 0.893 9 N -0.307 5.307 10 C -0.047 4.047 11 C -0.050 4.050 12 C -0.165 4.165 13 C -0.181 4.181 14 C -0.041 4.041 15 C -0.542 4.542 16 H 0.062 0.938 17 C -0.194 4.194 18 N -0.597 5.597 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.174 1.174 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.031 0.969 42 H 0.028 0.972 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.708 -2.586 16.900 23.217 hybrid contribution 1.585 0.318 0.225 1.632 sum -14.122 -2.269 17.125 22.313 Atomic orbital electron populations 1.21719 0.95273 1.01622 1.01791 1.21446 0.96307 0.95744 1.01417 1.22700 0.94703 0.96833 0.96975 0.89588 1.22800 0.97143 1.00056 0.96365 1.23601 0.98939 0.98648 0.99700 1.23244 0.96604 0.97803 0.87129 0.89317 1.60432 1.20310 1.20829 1.29125 1.21855 0.88402 0.99602 0.94870 1.20368 0.94643 0.95612 0.94385 1.21502 0.98748 0.98958 0.97316 1.21682 1.00415 0.95024 1.00935 1.19594 0.93994 0.95513 0.94967 1.21435 0.97408 1.34588 1.00784 0.93772 1.25920 1.00413 0.96900 0.96206 1.70065 1.19811 1.49592 1.20183 0.85796 0.77909 0.79184 0.80567 1.19619 1.21359 1.17376 0.92649 0.92204 0.93165 0.93088 0.91801 0.89596 0.90666 0.91773 0.90001 0.83582 0.95766 0.91985 0.91567 0.95381 0.94475 0.93757 0.94539 0.91573 0.96947 0.97163 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.90 71.98 0.71 -1.49 16 2 C -0.11 -1.95 5.77 30.59 0.18 -1.78 16 3 C -0.09 -1.69 3.45 -10.27 -0.04 -1.72 16 4 H 0.09 1.68 8.13 -2.39 -0.02 1.66 16 5 C -0.13 -1.91 7.63 31.12 0.24 -1.68 16 6 C -0.17 -3.05 7.71 31.12 0.24 -2.81 16 7 C 0.06 1.33 3.71 45.44 0.17 1.50 16 8 H 0.09 1.97 7.85 -2.39 -0.02 1.95 16 9 N -0.68 -17.39 5.82 -488.83 -2.85 -20.23 16 10 C 0.08 2.55 4.51 86.30 0.39 2.93 16 11 C -0.05 -1.89 0.60 -52.18 -0.03 -1.92 16 12 C -0.11 -4.17 8.06 71.98 0.58 -3.59 16 13 C -0.12 -4.48 7.89 71.98 0.57 -3.92 16 14 C 0.00 -0.13 3.11 29.85 0.09 -0.04 16 15 C -0.50 -28.68 8.20 25.60 0.21 -28.47 16 16 H 0.04 2.75 5.92 -2.91 -0.02 2.74 16 17 C 0.00 0.08 5.47 84.65 0.46 0.54 16 18 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 19 Si 0.94 45.15 27.47 68.60 1.88 47.04 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.06 1.03 7.84 -2.38 -0.02 1.01 16 28 H 0.09 1.19 7.90 -2.39 -0.02 1.17 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.46 7.83 -2.38 -0.02 1.44 16 32 H 0.34 8.44 6.26 -89.69 -0.56 7.88 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 1.97 8.13 -2.39 -0.02 1.95 16 35 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 36 H 0.03 1.23 6.62 -2.39 -0.02 1.21 16 37 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.55 6.62 -2.39 -0.02 1.54 16 40 H 0.07 1.97 6.57 -2.39 -0.02 1.96 16 41 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 42 H 0.01 0.47 7.57 -2.38 -0.02 0.45 16 43 H 0.26 15.64 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -62.95 327.66 3.44 -59.51 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.33 Total: 16.35 kcal Atomic # 6 Polarization: -46.21 SS G_CDS: 3.77 Total: -42.44 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -2.55 Total: -80.46 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Total: -62.95 3.44 -59.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309088934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.550 kcal (2) G-P(sol) polarization free energy of solvation -62.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds