Wall clock time and date at job start Mon Mar 30 2020 17:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47104 * 2 1 4 4 H 1.08994 * 109.47298 * 305.98518 * 3 2 1 5 5 C 1.50707 * 109.46880 * 185.98797 * 3 2 1 6 6 H 1.08004 * 119.99826 * 245.40765 * 5 3 2 7 7 C 1.37868 * 119.99765 * 65.41538 * 5 3 2 8 8 N 1.31520 * 119.99897 * 191.28721 * 7 5 3 9 9 Si 1.86798 * 120.00298 * 11.28884 * 7 5 3 10 10 H 1.48501 * 109.47116 * 90.63713 * 9 7 5 11 11 H 1.48501 * 109.46952 * 210.63826 * 9 7 5 12 12 H 1.48504 * 109.47225 * 330.63439 * 9 7 5 13 13 N 1.46896 * 109.47159 * 65.99201 * 3 2 1 14 14 C 1.46900 * 111.00145 * 206.30377 * 13 3 2 15 15 H 1.09001 * 110.01585 * 321.84930 * 14 13 3 16 16 C 1.54469 * 110.16324 * 83.10562 * 14 13 3 17 17 C 1.54885 * 104.10076 * 142.75442 * 16 14 13 18 18 C 1.54892 * 102.91626 * 322.29983 * 17 16 14 19 19 C 1.53872 * 110.03743 * 200.45635 * 14 13 3 20 20 H 1.08998 * 110.03537 * 121.37637 * 19 14 13 21 21 C 1.53008 * 110.03001 * 359.94978 * 19 14 13 22 22 C 1.53003 * 109.46925 * 69.16925 * 21 19 14 23 23 C 1.52994 * 109.47027 * 189.17011 * 21 19 14 24 24 H 1.08999 * 109.47186 * 64.32103 * 1 2 3 25 25 H 1.09007 * 109.47370 * 184.32192 * 1 2 3 26 26 H 1.09002 * 109.46974 * 304.32157 * 1 2 3 27 27 H 1.08995 * 109.47062 * 239.99710 * 2 1 3 28 28 H 1.09009 * 109.46597 * 119.99932 * 2 1 3 29 29 H 0.96994 * 120.00191 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99873 * 330.25378 * 13 3 2 31 31 H 1.08988 * 110.40582 * 24.16497 * 16 14 13 32 32 H 1.09006 * 110.65637 * 261.46120 * 16 14 13 33 33 H 1.09000 * 110.75693 * 203.89407 * 17 16 14 34 34 H 1.09001 * 110.75737 * 80.70713 * 17 16 14 35 35 H 1.09003 * 110.48829 * 156.53093 * 18 17 16 36 36 H 1.08999 * 110.48421 * 279.17218 * 18 17 16 37 37 H 1.08994 * 109.46721 * 309.17036 * 21 19 14 38 38 H 1.08997 * 109.46892 * 64.63215 * 22 21 19 39 39 H 1.08997 * 109.46803 * 184.63060 * 22 21 19 40 40 H 1.08995 * 109.47342 * 304.63066 * 22 21 19 41 41 H 1.09003 * 109.46972 * 179.97438 * 23 21 19 42 42 H 1.09007 * 109.47174 * 299.99816 * 23 21 19 43 43 H 1.09004 * 109.47540 * 59.99977 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5918 1.9863 -0.8315 5 6 3.5397 1.4450 -0.1482 6 1 4.1614 1.8053 0.6581 7 6 4.1180 0.9874 -1.3131 8 7 5.4156 0.7795 -1.3656 9 14 3.0586 0.6628 -2.8170 10 1 2.9851 1.8930 -3.6456 11 1 3.6567 -0.4370 -3.6157 12 1 1.6919 0.2743 -2.3853 13 7 1.6719 2.0919 1.2651 14 6 1.5602 3.5470 1.0969 15 1 2.3369 3.9052 0.4212 16 6 0.1679 3.9129 0.5369 17 6 -0.1949 5.2333 1.2607 18 6 0.3643 5.0107 2.6879 19 6 1.6852 4.2466 2.4617 20 1 2.5226 4.9443 2.4484 21 6 1.8855 3.2076 3.5669 22 6 3.2680 2.5685 3.4214 23 6 1.7797 3.8889 4.9326 24 1 -0.3633 0.4453 -0.9262 25 1 -0.3634 -1.0248 0.0774 26 1 -0.3633 0.5794 0.8488 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 5.8225 0.4573 -2.1850 30 1 0.8172 1.7041 1.6354 31 1 -0.5555 3.1343 0.7785 32 1 0.2158 4.0694 -0.5408 33 1 -1.2753 5.3752 1.2870 34 1 0.2933 6.0826 0.7827 35 1 0.5552 5.9664 3.1763 36 1 -0.3272 4.4105 3.2793 37 1 1.1187 2.4374 3.4847 38 1 4.0365 3.3238 3.5853 39 1 3.3791 1.7717 4.1569 40 1 3.3733 2.1546 2.4186 41 1 1.9220 3.1486 5.7200 42 1 2.5466 4.6592 5.0148 43 1 0.7948 4.3443 5.0363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309170007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:03 Heat of formation + Delta-G solvation = -17.888550 kcal Electronic energy + Delta-G solvation = -18863.162583 eV Core-core repulsion = 16328.424624 eV Total energy + Delta-G solvation = -2534.737958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.12790 -35.73292 -33.80932 -32.08115 -31.11517 -27.61410 -27.38076 -26.40398 -25.41435 -22.49191 -20.96229 -20.35449 -19.75885 -18.24810 -16.74182 -15.69410 -15.34164 -14.45389 -14.07656 -13.81390 -13.60839 -13.25509 -12.91543 -12.59825 -12.53084 -12.06030 -11.95128 -11.78602 -11.60077 -11.30976 -10.97387 -10.82608 -10.70102 -10.62503 -10.45836 -10.34345 -10.14963 -10.05747 -9.84214 -9.71688 -9.61024 -9.30606 -9.08583 -8.45037 -7.11605 -6.01316 -3.95232 3.29094 3.38568 3.40982 4.46019 4.91686 4.96875 5.04409 5.25483 5.37581 5.50730 5.62111 5.67795 5.81530 5.87327 5.89691 5.90790 5.96277 6.00748 6.06429 6.11632 6.16171 6.21700 6.30367 6.33152 6.40398 6.51421 6.55716 6.61671 6.65827 6.71819 6.79609 6.86473 6.88800 7.02835 7.10374 7.29398 7.68592 7.82472 8.08459 8.35695 8.81632 9.15511 9.64664 11.11823 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.008450 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.066128 B = 3312.767147 C = 3635.084148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C 0.190 3.810 4 H -0.004 1.004 5 C -0.496 4.496 6 H 0.083 0.917 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.250 1.250 13 N -0.658 5.658 14 C 0.094 3.906 15 H 0.085 0.915 16 C -0.154 4.154 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.078 4.078 20 H 0.065 0.935 21 C -0.062 4.062 22 C -0.156 4.156 23 C -0.151 4.151 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.261 0.739 30 H 0.318 0.682 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.031 0.969 40 H 0.118 0.882 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.038 5.518 6.775 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.082 3.918 4 H 0.013 0.987 5 C -0.534 4.534 6 H 0.101 0.899 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.684 3.316 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.174 1.174 13 N -0.288 5.288 14 C -0.017 4.017 15 H 0.103 0.897 16 C -0.193 4.193 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.097 4.097 20 H 0.084 0.916 21 C -0.081 4.081 22 C -0.213 4.213 23 C -0.208 4.208 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.136 0.864 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.218 5.450 6.884 13.472 hybrid contribution -1.285 -0.096 -1.486 1.967 sum -11.504 5.354 5.398 13.789 Atomic orbital electron populations 1.21916 0.98764 1.00161 1.00370 1.22188 0.92356 1.00425 1.02088 1.19539 0.96585 0.89388 0.86324 0.98659 1.21062 0.89220 1.41405 1.01725 0.89912 1.24927 0.94633 0.95141 0.98471 1.69940 1.10315 1.46065 1.27351 0.87377 0.82356 0.77919 0.83932 1.21053 1.21659 1.17435 1.60850 1.36695 1.01805 1.29482 1.22169 0.94819 0.89519 0.95185 0.89669 1.23190 0.99006 0.97200 0.99904 1.22419 0.99591 0.97789 0.96292 1.22463 0.97414 0.99494 0.96287 1.21847 0.96308 0.96348 0.95192 0.91614 1.20771 0.99270 0.96302 0.91760 1.22163 0.94096 0.98832 1.06176 1.21992 1.00589 1.00195 0.98059 0.93908 0.93923 0.93530 0.91967 0.91952 0.92916 0.86267 0.92214 0.92248 0.92557 0.91894 0.92472 0.91926 0.91590 0.95289 0.94981 0.86388 0.93564 0.93475 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.82 37.16 0.36 -2.24 16 2 C -0.13 -2.74 4.72 -26.73 -0.13 -2.86 16 3 C 0.19 4.20 1.41 -68.87 -0.10 4.11 16 4 H 0.00 -0.10 6.37 -51.93 -0.33 -0.43 16 5 C -0.50 -13.34 8.87 -34.44 -0.31 -13.64 16 6 H 0.08 2.46 6.59 -52.48 -0.35 2.11 16 7 C 0.07 1.95 5.38 -17.82 -0.10 1.86 16 8 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 9 Si 0.86 20.89 25.77 -169.99 -4.38 16.51 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.25 -5.67 5.26 56.52 0.30 -5.37 16 13 N -0.66 -12.32 2.42 -99.67 -0.24 -12.56 16 14 C 0.09 1.63 2.78 -66.49 -0.18 1.44 16 15 H 0.09 1.72 7.76 -51.93 -0.40 1.32 16 16 C -0.15 -2.31 6.16 -24.97 -0.15 -2.46 16 17 C -0.12 -1.56 6.90 -24.74 -0.17 -1.73 16 18 C -0.12 -1.50 5.18 -25.07 -0.13 -1.63 16 19 C -0.08 -1.17 2.51 -89.50 -0.22 -1.40 16 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 21 C -0.06 -0.94 1.93 -90.62 -0.18 -1.11 16 22 C -0.16 -2.75 8.87 37.16 0.33 -2.42 16 23 C -0.15 -1.95 8.86 37.15 0.33 -1.62 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.71 6.37 -51.93 -0.33 0.38 16 27 H 0.06 1.39 4.63 -51.93 -0.24 1.15 16 28 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.32 5.46 5.09 -39.29 -0.20 5.26 16 31 H 0.06 0.88 7.64 -51.94 -0.40 0.48 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.77 7.24 -51.93 -0.38 0.39 16 37 H 0.07 1.02 6.83 -51.93 -0.35 0.66 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.12 2.49 4.08 -51.93 -0.21 2.28 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.05 0.54 6.69 -51.93 -0.35 0.19 16 LS Contribution 310.32 15.07 4.68 4.68 Total: -1.00 -27.76 310.32 -7.66 -35.42 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.85 Total: 6.05 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -0.64 Total: -23.72 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.53 Total: -38.93 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.38 Total: 16.51 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.76 -7.66 -35.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309170007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.532 kcal (2) G-P(sol) polarization free energy of solvation -27.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds