Wall clock time and date at job start Mon Mar 30 2020 17:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47104 * 2 1 4 4 H 1.08994 * 109.47298 * 305.98518 * 3 2 1 5 5 C 1.50707 * 109.46880 * 185.98797 * 3 2 1 6 6 H 1.08004 * 119.99826 * 245.40765 * 5 3 2 7 7 C 1.37868 * 119.99765 * 65.41538 * 5 3 2 8 8 N 1.31520 * 119.99897 * 191.28721 * 7 5 3 9 9 Si 1.86798 * 120.00298 * 11.28884 * 7 5 3 10 10 H 1.48501 * 109.47116 * 90.63713 * 9 7 5 11 11 H 1.48501 * 109.46952 * 210.63826 * 9 7 5 12 12 H 1.48504 * 109.47225 * 330.63439 * 9 7 5 13 13 N 1.46896 * 109.47159 * 65.99201 * 3 2 1 14 14 C 1.46900 * 111.00145 * 206.30377 * 13 3 2 15 15 H 1.09001 * 110.01585 * 321.84930 * 14 13 3 16 16 C 1.54469 * 110.16324 * 83.10562 * 14 13 3 17 17 C 1.54885 * 104.10076 * 142.75442 * 16 14 13 18 18 C 1.54892 * 102.91626 * 322.29983 * 17 16 14 19 19 C 1.53872 * 110.03743 * 200.45635 * 14 13 3 20 20 H 1.08998 * 110.03537 * 121.37637 * 19 14 13 21 21 C 1.53008 * 110.03001 * 359.94978 * 19 14 13 22 22 C 1.53003 * 109.46925 * 69.16925 * 21 19 14 23 23 C 1.52994 * 109.47027 * 189.17011 * 21 19 14 24 24 H 1.08999 * 109.47186 * 64.32103 * 1 2 3 25 25 H 1.09007 * 109.47370 * 184.32192 * 1 2 3 26 26 H 1.09002 * 109.46974 * 304.32157 * 1 2 3 27 27 H 1.08995 * 109.47062 * 239.99710 * 2 1 3 28 28 H 1.09009 * 109.46597 * 119.99932 * 2 1 3 29 29 H 0.96994 * 120.00191 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99873 * 330.25378 * 13 3 2 31 31 H 1.08988 * 110.40582 * 24.16497 * 16 14 13 32 32 H 1.09006 * 110.65637 * 261.46120 * 16 14 13 33 33 H 1.09000 * 110.75693 * 203.89407 * 17 16 14 34 34 H 1.09001 * 110.75737 * 80.70713 * 17 16 14 35 35 H 1.09003 * 110.48829 * 156.53093 * 18 17 16 36 36 H 1.08999 * 110.48421 * 279.17218 * 18 17 16 37 37 H 1.08994 * 109.46721 * 309.17036 * 21 19 14 38 38 H 1.08997 * 109.46892 * 64.63215 * 22 21 19 39 39 H 1.08997 * 109.46803 * 184.63060 * 22 21 19 40 40 H 1.08995 * 109.47342 * 304.63066 * 22 21 19 41 41 H 1.09003 * 109.46972 * 179.97438 * 23 21 19 42 42 H 1.09007 * 109.47174 * 299.99816 * 23 21 19 43 43 H 1.09004 * 109.47540 * 59.99977 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5918 1.9863 -0.8315 5 6 3.5397 1.4450 -0.1482 6 1 4.1614 1.8053 0.6581 7 6 4.1180 0.9874 -1.3131 8 7 5.4156 0.7795 -1.3656 9 14 3.0586 0.6628 -2.8170 10 1 2.9851 1.8930 -3.6456 11 1 3.6567 -0.4370 -3.6157 12 1 1.6919 0.2743 -2.3853 13 7 1.6719 2.0919 1.2651 14 6 1.5602 3.5470 1.0969 15 1 2.3369 3.9052 0.4212 16 6 0.1679 3.9129 0.5369 17 6 -0.1949 5.2333 1.2607 18 6 0.3643 5.0107 2.6879 19 6 1.6852 4.2466 2.4617 20 1 2.5226 4.9443 2.4484 21 6 1.8855 3.2076 3.5669 22 6 3.2680 2.5685 3.4214 23 6 1.7797 3.8889 4.9326 24 1 -0.3633 0.4453 -0.9262 25 1 -0.3634 -1.0248 0.0774 26 1 -0.3633 0.5794 0.8488 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 5.8225 0.4573 -2.1850 30 1 0.8172 1.7041 1.6354 31 1 -0.5555 3.1343 0.7785 32 1 0.2158 4.0694 -0.5408 33 1 -1.2753 5.3752 1.2870 34 1 0.2933 6.0826 0.7827 35 1 0.5552 5.9664 3.1763 36 1 -0.3272 4.4105 3.2793 37 1 1.1187 2.4374 3.4847 38 1 4.0365 3.3238 3.5853 39 1 3.3791 1.7717 4.1569 40 1 3.3733 2.1546 2.4186 41 1 1.9220 3.1486 5.7200 42 1 2.5466 4.6592 5.0148 43 1 0.7948 4.3443 5.0363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309170007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:03 Heat of formation + Delta-G solvation = -33.064693 kcal Electronic energy + Delta-G solvation = -18863.820670 eV Core-core repulsion = 16328.424624 eV Total energy + Delta-G solvation = -2535.396045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44697 -37.34260 -35.03555 -34.15875 -32.54419 -29.29704 -28.59877 -27.73036 -26.87109 -24.22045 -22.26488 -21.54802 -21.40151 -19.58128 -18.80536 -17.04272 -16.87438 -16.07470 -15.68824 -15.17004 -14.97634 -14.68515 -14.45430 -14.11447 -13.89268 -13.55201 -13.46874 -13.10477 -12.84339 -12.74693 -12.66906 -12.26931 -12.26162 -11.95483 -11.86394 -11.74455 -11.63992 -11.44366 -11.20178 -11.14174 -11.07571 -10.94906 -10.85248 -10.57992 -8.67948 -8.21381 -6.18495 1.32502 1.36594 1.44909 2.38186 3.12354 3.57660 3.79403 3.89446 4.07953 4.35047 4.39517 4.45617 4.47581 4.50899 4.54736 4.72089 4.74246 4.81099 4.87316 4.90820 4.96771 5.00474 5.04774 5.13138 5.17682 5.20278 5.23553 5.25272 5.28777 5.36365 5.40899 5.51451 5.54374 5.58985 5.61840 5.80474 5.86880 6.11582 6.24496 6.66183 6.92304 7.09810 7.45631 8.95618 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.008450 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.066128 B = 3312.767147 C = 3635.084148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.198 3.802 4 H -0.010 1.010 5 C -0.490 4.490 6 H 0.038 0.962 7 C 0.009 3.991 8 N -0.951 5.951 9 Si 0.919 3.081 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.218 1.218 13 N -0.658 5.658 14 C 0.090 3.910 15 H 0.041 0.959 16 C -0.149 4.149 17 C -0.116 4.116 18 C -0.109 4.109 19 C -0.076 4.076 20 H 0.051 0.949 21 C -0.056 4.056 22 C -0.153 4.153 23 C -0.145 4.145 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.260 0.740 30 H 0.332 0.668 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.021 0.979 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.804 6.022 7.616 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.089 3.911 4 H 0.008 0.992 5 C -0.529 4.529 6 H 0.056 0.944 7 C -0.187 4.187 8 N -0.593 5.593 9 Si 0.745 3.255 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.141 1.141 13 N -0.289 5.289 14 C -0.020 4.020 15 H 0.060 0.940 16 C -0.189 4.189 17 C -0.154 4.154 18 C -0.146 4.146 19 C -0.095 4.095 20 H 0.069 0.931 21 C -0.075 4.075 22 C -0.210 4.210 23 C -0.202 4.202 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.153 0.847 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.022 5.964 7.747 17.094 hybrid contribution 0.005 -0.218 -1.656 1.670 sum -14.017 5.745 6.092 16.328 Atomic orbital electron populations 1.21824 0.95018 1.02102 1.01369 1.22057 0.95651 0.98382 1.00942 1.19295 0.93190 0.90953 0.87674 0.99203 1.21364 0.91874 1.39501 1.00165 0.94350 1.25744 0.95744 0.95491 1.01764 1.70104 1.12539 1.48485 1.28172 0.86359 0.82118 0.77415 0.79648 1.21258 1.21948 1.14105 1.60690 1.37719 1.02711 1.27827 1.22152 0.95254 0.88560 0.96080 0.94047 1.23109 0.97274 0.99072 0.99418 1.22404 1.01115 0.96182 0.95725 1.22413 0.95572 1.00015 0.96624 1.21803 0.97791 0.96169 0.93759 0.93052 1.20701 0.97096 0.96348 0.93350 1.22072 0.96218 0.98828 1.03891 1.21915 1.01834 1.00147 0.96281 0.93614 0.91707 0.91678 0.93671 0.92702 0.93114 0.84713 0.91027 0.93344 0.90110 0.91956 0.90782 0.90447 0.91357 0.95981 0.94697 0.90090 0.93039 0.93620 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 9.82 71.98 0.71 -3.68 16 2 C -0.13 -5.28 4.72 30.59 0.14 -5.14 16 3 C 0.20 8.79 1.41 44.17 0.06 8.85 16 4 H -0.01 -0.44 6.37 -2.39 -0.02 -0.45 16 5 C -0.49 -27.65 8.87 25.60 0.23 -27.42 16 6 H 0.04 2.46 6.59 -2.91 -0.02 2.44 16 7 C 0.01 0.51 5.38 84.65 0.46 0.96 16 8 N -0.95 -60.45 13.96 21.44 0.30 -60.15 16 9 Si 0.92 43.95 25.77 68.60 1.77 45.71 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.22 -9.25 5.26 99.48 0.52 -8.72 16 13 N -0.66 -24.52 2.42 -469.26 -1.14 -25.65 16 14 C 0.09 3.11 2.78 45.71 0.13 3.24 16 15 H 0.04 1.76 7.76 -2.39 -0.02 1.75 16 16 C -0.15 -4.16 6.16 31.74 0.20 -3.96 16 17 C -0.12 -2.55 6.90 31.88 0.22 -2.34 16 18 C -0.11 -2.34 5.18 31.67 0.16 -2.18 16 19 C -0.08 -2.20 2.51 -10.07 -0.03 -2.23 16 20 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 21 C -0.06 -1.61 1.93 -10.79 -0.02 -1.63 16 22 C -0.15 -5.54 8.87 71.98 0.64 -4.91 16 23 C -0.14 -3.33 8.86 71.98 0.64 -2.69 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.06 1.71 6.37 -2.39 -0.02 1.70 16 27 H 0.04 1.95 4.63 -2.39 -0.01 1.93 16 28 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.33 10.72 5.09 -89.69 -0.46 10.26 16 31 H 0.07 1.83 7.64 -2.39 -0.02 1.82 16 32 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.49 7.24 -2.39 -0.02 1.48 16 37 H 0.07 1.94 6.83 -2.39 -0.02 1.92 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 3.61 4.08 -2.39 -0.01 3.60 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.07 1.30 6.69 -2.38 -0.02 1.29 16 Total: -1.00 -63.92 310.32 4.78 -59.14 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.32 Total: 24.07 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 3.53 Total: -43.12 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -0.84 Total: -85.80 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.77 Total: 45.71 kcal Total: -63.92 4.78 -59.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309170007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.077 kcal (2) G-P(sol) polarization free energy of solvation -63.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds