Wall clock time and date at job start Mon Mar 30 2020 17:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47056 * 2 1 4 4 H 1.08995 * 109.47509 * 306.33432 * 3 2 1 5 5 C 1.50703 * 109.46972 * 186.33775 * 3 2 1 6 6 H 1.07997 * 119.99957 * 240.00281 * 5 3 2 7 7 C 1.37884 * 120.00129 * 59.99599 * 5 3 2 8 8 N 1.31517 * 119.99516 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00118 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46852 * 60.00358 * 9 7 5 11 11 H 1.48499 * 109.46851 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47216 * 300.00548 * 9 7 5 13 13 N 1.46891 * 109.47414 * 66.33870 * 3 2 1 14 14 C 1.46903 * 111.00128 * 245.10448 * 13 3 2 15 15 H 1.08994 * 110.01413 * 59.91385 * 14 13 3 16 16 C 1.54268 * 110.07126 * 298.49541 * 14 13 3 17 17 C 1.54888 * 104.19261 * 264.30312 * 16 14 13 18 18 C 1.54896 * 102.75013 * 322.05807 * 17 16 14 19 19 C 1.53876 * 110.03055 * 181.30328 * 14 13 3 20 20 H 1.08994 * 110.03655 * 359.97438 * 19 14 13 21 21 C 1.53001 * 110.03156 * 238.61573 * 19 14 13 22 22 C 1.52994 * 109.47249 * 183.19549 * 21 19 14 23 23 C 1.53000 * 109.47053 * 63.19645 * 21 19 14 24 24 H 1.08998 * 109.47196 * 187.33416 * 1 2 3 25 25 H 1.09005 * 109.46699 * 307.33424 * 1 2 3 26 26 H 1.09000 * 109.46969 * 67.32902 * 1 2 3 27 27 H 1.09003 * 109.47039 * 240.00028 * 2 1 3 28 28 H 1.08999 * 109.46794 * 120.00075 * 2 1 3 29 29 H 0.96998 * 119.99497 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00521 * 121.14793 * 13 3 2 31 31 H 1.08994 * 110.48581 * 22.97937 * 16 14 13 32 32 H 1.09000 * 110.48391 * 145.62381 * 16 14 13 33 33 H 1.08996 * 110.76225 * 80.37183 * 17 16 14 34 34 H 1.08998 * 110.75707 * 203.74682 * 17 16 14 35 35 H 1.09003 * 110.48192 * 279.26522 * 18 17 16 36 36 H 1.09001 * 110.48708 * 156.62650 * 18 17 16 37 37 H 1.08998 * 109.47246 * 303.19879 * 21 19 14 38 38 H 1.08998 * 109.47266 * 300.00318 * 22 21 19 39 39 H 1.09000 * 109.47047 * 60.00431 * 22 21 19 40 40 H 1.09000 * 109.47093 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.47304 * 171.99074 * 23 21 19 42 42 H 1.09002 * 109.47242 * 291.98653 * 23 21 19 43 43 H 1.09002 * 109.47213 * 51.98880 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5871 1.9880 -0.8278 5 6 3.5388 1.4454 -0.1568 6 1 4.1611 1.8839 0.6092 7 6 4.1158 0.8880 -1.2783 8 7 3.3579 0.3544 -2.2113 9 14 5.9735 0.8922 -1.4731 10 1 6.5911 0.1494 -0.3452 11 1 6.3382 0.2386 -2.7556 12 1 6.4681 2.2925 -1.4734 13 7 1.6792 2.0895 1.2685 14 6 0.7299 3.1886 1.0476 15 1 -0.1796 2.8082 0.5827 16 6 1.3698 4.2687 0.1510 17 6 1.9264 5.3118 1.1516 18 6 0.8394 5.3414 2.2546 19 6 0.3927 3.8706 2.3851 20 1 0.9330 3.3858 3.1981 21 6 -1.1137 3.8014 2.6435 22 6 -1.4446 4.5516 3.9352 23 6 -1.5411 2.3386 2.7796 24 1 -0.3633 -1.0192 0.1312 25 1 -0.3633 0.6233 0.8172 26 1 -0.3633 0.3961 -0.9483 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7637 -0.0374 -3.0005 30 1 2.5011 2.4140 1.7555 31 1 2.1774 3.8416 -0.4435 32 1 0.6182 4.7227 -0.4948 33 1 2.8822 4.9838 1.5600 34 1 2.0224 6.2887 0.6777 35 1 0.0022 5.9687 1.9484 36 1 1.2599 5.6973 3.1952 37 1 -1.6467 4.2596 1.8105 38 1 -0.9115 4.0933 4.7683 39 1 -1.1402 5.5937 3.8383 40 1 -2.5177 4.5018 4.1196 41 1 -2.5809 2.2924 3.1033 42 1 -1.4380 1.8388 1.8164 43 1 -0.9090 1.8423 3.5160 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309170008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:08 Heat of formation + Delta-G solvation = -37.113361 kcal Electronic energy + Delta-G solvation = -18624.827978 eV Core-core repulsion = 16089.256370 eV Total energy + Delta-G solvation = -2535.571609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.01633 -35.55232 -33.86980 -31.96086 -30.45494 -27.77962 -27.46146 -26.41183 -25.06904 -22.70614 -20.89810 -20.26880 -19.02073 -18.77760 -16.60958 -15.34623 -15.13923 -14.66082 -14.05267 -13.67684 -13.37205 -13.28515 -12.65903 -12.52802 -12.27415 -11.99901 -11.93002 -11.70045 -11.37186 -11.13116 -11.08649 -10.84088 -10.72683 -10.61103 -10.45694 -10.32958 -10.13368 -10.05043 -9.92711 -9.87720 -9.52563 -9.26328 -8.82671 -8.36181 -7.10124 -5.99028 -4.07697 3.30317 3.35410 3.37879 4.41350 4.93720 4.98607 5.04543 5.28062 5.31015 5.44810 5.51270 5.74562 5.83844 5.89406 5.97303 6.00345 6.05283 6.11164 6.14736 6.18217 6.29249 6.29295 6.37012 6.43053 6.46339 6.51457 6.58957 6.68010 6.73794 6.79114 6.88347 7.03930 7.18365 7.26911 7.56847 7.66983 7.81573 8.07659 8.30807 8.47538 8.78484 9.08348 9.58454 11.04315 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.007355 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.477119 B = 3805.967238 C = 4477.962656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.020 0.980 5 C -0.529 4.529 6 H 0.055 0.945 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.680 5.680 14 C 0.096 3.904 15 H 0.071 0.929 16 C -0.163 4.163 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.082 4.082 20 H 0.076 0.924 21 C -0.085 4.085 22 C -0.145 4.145 23 C -0.145 4.145 24 H 0.025 0.975 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.086 0.914 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.328 0.672 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 7.259 7.749 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.038 0.962 5 C -0.568 4.568 6 H 0.073 0.927 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.015 4.015 15 H 0.089 0.911 16 C -0.202 4.202 17 C -0.160 4.160 18 C -0.156 4.156 19 C -0.100 4.100 20 H 0.095 0.905 21 C -0.104 4.104 22 C -0.203 4.203 23 C -0.202 4.202 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.719 6.676 7.715 12.794 hybrid contribution 1.635 0.645 -0.658 1.877 sum -6.084 7.321 7.057 11.849 Atomic orbital electron populations 1.21839 0.99657 0.98722 0.99906 1.21517 0.91577 0.99756 1.01436 1.19094 0.93641 0.91091 0.85370 0.96234 1.21577 0.92068 1.38392 1.04744 0.92712 1.24915 0.97794 0.95140 0.95861 1.69881 1.34680 1.38669 1.09203 0.86699 0.86058 0.78145 0.77313 1.20281 1.21333 1.20448 1.60964 1.17684 1.27495 1.24831 1.22208 0.96441 0.90147 0.92752 0.91087 1.23213 1.01174 0.97406 0.98418 1.22431 0.98309 0.98624 0.96586 1.22452 0.98189 0.96707 0.98276 1.21926 0.94792 0.94702 0.98620 0.90529 1.21125 0.95817 0.96159 0.97257 1.21861 1.00520 1.00071 0.97818 1.21874 0.99622 0.95909 1.02786 0.95626 0.93078 0.94827 0.89549 0.94906 0.92921 0.85433 0.89519 0.93051 0.91761 0.92691 0.92197 0.92546 0.91902 0.92923 0.92933 0.93380 0.93917 0.91788 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.85 37.16 0.37 -2.62 16 2 C -0.10 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.23 1.32 -68.87 -0.09 5.13 16 4 H 0.02 0.53 6.52 -51.93 -0.34 0.19 16 5 C -0.53 -14.06 8.37 -34.44 -0.29 -14.35 16 6 H 0.05 1.44 7.33 -52.49 -0.38 1.06 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.89 -24.99 11.29 55.43 0.63 -24.36 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.88 5.59 -99.79 -0.56 -14.43 16 14 C 0.10 1.68 2.15 -66.59 -0.14 1.54 16 15 H 0.07 1.32 5.89 -51.93 -0.31 1.02 16 16 C -0.16 -2.90 5.99 -25.07 -0.15 -3.05 16 17 C -0.12 -1.85 6.91 -24.74 -0.17 -2.02 16 18 C -0.12 -1.58 5.25 -25.07 -0.13 -1.71 16 19 C -0.08 -1.19 2.23 -89.50 -0.20 -1.39 16 20 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16 21 C -0.08 -1.10 2.17 -90.62 -0.20 -1.30 16 22 C -0.15 -1.60 8.95 37.15 0.33 -1.27 16 23 C -0.14 -1.95 8.86 37.16 0.33 -1.63 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 1.00 4.91 -51.93 -0.25 0.74 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 2.34 5.93 -51.93 -0.31 2.03 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.33 6.82 7.75 -39.29 -0.30 6.51 16 31 H 0.09 1.86 6.33 -51.93 -0.33 1.53 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.75 7.60 -51.93 -0.39 0.36 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.55 7.06 -51.93 -0.37 0.18 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.04 0.50 8.13 -51.93 -0.42 0.08 16 42 H 0.06 0.97 5.07 -51.93 -0.26 0.70 16 43 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -26.42 318.77 -8.60 -35.02 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.87 Total: 6.54 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -0.58 Total: -23.65 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.07 Total: -38.80 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.42 -8.60 -35.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309170008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.092 kcal (2) G-P(sol) polarization free energy of solvation -26.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds