Wall clock time and date at job start Mon Mar 30 2020 17:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47056 * 2 1 4 4 H 1.08995 * 109.47509 * 306.33432 * 3 2 1 5 5 C 1.50703 * 109.46972 * 186.33775 * 3 2 1 6 6 H 1.07997 * 119.99957 * 240.00281 * 5 3 2 7 7 C 1.37884 * 120.00129 * 59.99599 * 5 3 2 8 8 N 1.31517 * 119.99516 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00118 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46852 * 60.00358 * 9 7 5 11 11 H 1.48499 * 109.46851 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47216 * 300.00548 * 9 7 5 13 13 N 1.46891 * 109.47414 * 66.33870 * 3 2 1 14 14 C 1.46903 * 111.00128 * 245.10448 * 13 3 2 15 15 H 1.08994 * 110.01413 * 59.91385 * 14 13 3 16 16 C 1.54268 * 110.07126 * 298.49541 * 14 13 3 17 17 C 1.54888 * 104.19261 * 264.30312 * 16 14 13 18 18 C 1.54896 * 102.75013 * 322.05807 * 17 16 14 19 19 C 1.53876 * 110.03055 * 181.30328 * 14 13 3 20 20 H 1.08994 * 110.03655 * 359.97438 * 19 14 13 21 21 C 1.53001 * 110.03156 * 238.61573 * 19 14 13 22 22 C 1.52994 * 109.47249 * 183.19549 * 21 19 14 23 23 C 1.53000 * 109.47053 * 63.19645 * 21 19 14 24 24 H 1.08998 * 109.47196 * 187.33416 * 1 2 3 25 25 H 1.09005 * 109.46699 * 307.33424 * 1 2 3 26 26 H 1.09000 * 109.46969 * 67.32902 * 1 2 3 27 27 H 1.09003 * 109.47039 * 240.00028 * 2 1 3 28 28 H 1.08999 * 109.46794 * 120.00075 * 2 1 3 29 29 H 0.96998 * 119.99497 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00521 * 121.14793 * 13 3 2 31 31 H 1.08994 * 110.48581 * 22.97937 * 16 14 13 32 32 H 1.09000 * 110.48391 * 145.62381 * 16 14 13 33 33 H 1.08996 * 110.76225 * 80.37183 * 17 16 14 34 34 H 1.08998 * 110.75707 * 203.74682 * 17 16 14 35 35 H 1.09003 * 110.48192 * 279.26522 * 18 17 16 36 36 H 1.09001 * 110.48708 * 156.62650 * 18 17 16 37 37 H 1.08998 * 109.47246 * 303.19879 * 21 19 14 38 38 H 1.08998 * 109.47266 * 300.00318 * 22 21 19 39 39 H 1.09000 * 109.47047 * 60.00431 * 22 21 19 40 40 H 1.09000 * 109.47093 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.47304 * 171.99074 * 23 21 19 42 42 H 1.09002 * 109.47242 * 291.98653 * 23 21 19 43 43 H 1.09002 * 109.47213 * 51.98880 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5871 1.9880 -0.8278 5 6 3.5388 1.4454 -0.1568 6 1 4.1611 1.8839 0.6092 7 6 4.1158 0.8880 -1.2783 8 7 3.3579 0.3544 -2.2113 9 14 5.9735 0.8922 -1.4731 10 1 6.5911 0.1494 -0.3452 11 1 6.3382 0.2386 -2.7556 12 1 6.4681 2.2925 -1.4734 13 7 1.6792 2.0895 1.2685 14 6 0.7299 3.1886 1.0476 15 1 -0.1796 2.8082 0.5827 16 6 1.3698 4.2687 0.1510 17 6 1.9264 5.3118 1.1516 18 6 0.8394 5.3414 2.2546 19 6 0.3927 3.8706 2.3851 20 1 0.9330 3.3858 3.1981 21 6 -1.1137 3.8014 2.6435 22 6 -1.4446 4.5516 3.9352 23 6 -1.5411 2.3386 2.7796 24 1 -0.3633 -1.0192 0.1312 25 1 -0.3633 0.6233 0.8172 26 1 -0.3633 0.3961 -0.9483 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7637 -0.0374 -3.0005 30 1 2.5011 2.4140 1.7555 31 1 2.1774 3.8416 -0.4435 32 1 0.6182 4.7227 -0.4948 33 1 2.8822 4.9838 1.5600 34 1 2.0224 6.2887 0.6777 35 1 0.0022 5.9687 1.9484 36 1 1.2599 5.6973 3.1952 37 1 -1.6467 4.2596 1.8105 38 1 -0.9115 4.0933 4.7683 39 1 -1.1402 5.5937 3.8383 40 1 -2.5177 4.5018 4.1196 41 1 -2.5809 2.2924 3.1033 42 1 -1.4380 1.8388 1.8164 43 1 -0.9090 1.8423 3.5160 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309170008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:07 Heat of formation + Delta-G solvation = -50.855081 kcal Electronic energy + Delta-G solvation = -18625.423864 eV Core-core repulsion = 16089.256370 eV Total energy + Delta-G solvation = -2536.167494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35972 -37.23059 -35.16161 -33.89221 -32.14925 -29.28969 -28.74311 -27.66723 -26.65594 -24.58782 -22.04708 -21.83633 -20.47236 -20.28960 -18.54900 -16.92381 -16.60144 -16.36210 -15.40152 -15.14099 -14.91004 -14.55665 -14.25102 -13.94622 -13.77162 -13.42005 -13.17512 -13.11118 -12.92857 -12.85170 -12.69813 -12.47211 -12.34764 -12.02977 -11.87389 -11.73606 -11.50897 -11.46948 -11.35022 -11.20851 -11.10058 -10.89971 -10.82965 -10.43909 -8.85158 -8.07011 -6.23197 1.39892 1.40866 1.48120 2.41467 3.17201 3.66240 3.76886 3.86191 4.13897 4.27929 4.35521 4.46993 4.63967 4.67212 4.74248 4.77630 4.81663 4.85258 4.88500 4.93406 4.95623 5.00489 5.10546 5.13215 5.17488 5.21272 5.25953 5.32711 5.37019 5.39356 5.51085 5.56909 5.57909 5.66150 5.70189 5.76885 5.82665 6.06987 6.32068 6.55088 6.92545 7.14290 7.47007 8.94172 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.007355 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.477119 B = 3805.967238 C = 4477.962656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 C 0.227 3.773 4 H -0.011 1.011 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.673 5.673 14 C 0.096 3.904 15 H 0.060 0.940 16 C -0.163 4.163 17 C -0.118 4.118 18 C -0.108 4.108 19 C -0.074 4.074 20 H 0.070 0.930 21 C -0.082 4.082 22 C -0.140 4.140 23 C -0.143 4.143 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.027 0.973 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.260 0.740 30 H 0.326 0.674 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.823 8.614 9.348 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.140 4.140 3 C 0.118 3.882 4 H 0.007 0.993 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.302 5.302 14 C -0.015 4.015 15 H 0.078 0.922 16 C -0.202 4.202 17 C -0.156 4.156 18 C -0.145 4.145 19 C -0.093 4.093 20 H 0.088 0.912 21 C -0.101 4.101 22 C -0.197 4.197 23 C -0.200 4.200 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.314 8.042 9.329 14.860 hybrid contribution 1.792 0.220 -1.175 2.154 sum -6.522 8.262 8.154 13.315 Atomic orbital electron populations 1.21697 0.96969 1.00168 1.00070 1.21390 0.94000 0.99216 0.99432 1.18822 0.92332 0.91079 0.85951 0.99323 1.21913 0.93458 1.38004 1.04723 0.92904 1.25654 1.01951 0.94959 0.95698 1.70020 1.36267 1.39426 1.09575 0.85727 0.81086 0.78230 0.77261 1.19759 1.21107 1.19929 1.60902 1.17698 1.28888 1.22711 1.22269 0.95011 0.89421 0.94812 0.92229 1.23121 1.00020 0.98296 0.98771 1.22406 0.98392 0.98266 0.96492 1.22412 0.97933 0.95818 0.98379 1.21850 0.96194 0.95196 0.96045 0.91203 1.21106 0.94258 0.96098 0.98642 1.21810 1.01424 1.00208 0.96302 1.21841 1.00690 0.96111 1.01330 0.93751 0.91873 0.95421 0.92590 0.95684 0.93065 0.85666 0.93819 0.92395 0.92796 0.91137 0.90599 0.90598 0.91755 0.92890 0.91893 0.92129 0.92095 0.93894 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 9.85 71.98 0.71 -4.78 16 2 C -0.10 -5.05 5.45 30.59 0.17 -4.88 16 3 C 0.23 11.35 1.32 44.17 0.06 11.41 16 4 H -0.01 -0.61 6.52 -2.39 -0.02 -0.63 16 5 C -0.54 -29.58 8.37 25.60 0.21 -29.36 16 6 H 0.05 2.83 7.33 -2.91 -0.02 2.81 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -53.05 11.29 21.45 0.24 -52.80 16 9 Si 0.95 43.89 29.54 68.60 2.03 45.91 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.67 -27.89 5.59 -469.62 -2.62 -30.51 16 14 C 0.10 3.35 2.15 45.64 0.10 3.45 16 15 H 0.06 2.23 5.89 -2.39 -0.01 2.22 16 16 C -0.16 -5.84 5.99 31.67 0.19 -5.65 16 17 C -0.12 -3.41 6.91 31.89 0.22 -3.18 16 18 C -0.11 -2.56 5.25 31.67 0.17 -2.39 16 19 C -0.07 -2.02 2.23 -10.07 -0.02 -2.04 16 20 H 0.07 2.03 7.89 -2.39 -0.02 2.02 16 21 C -0.08 -1.93 2.17 -10.80 -0.02 -1.95 16 22 C -0.14 -2.59 8.95 71.98 0.64 -1.95 16 23 C -0.14 -3.60 8.86 71.98 0.64 -2.96 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 2.46 4.91 -2.38 -0.01 2.45 16 26 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 3.13 5.93 -2.39 -0.01 3.12 16 28 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.33 13.73 7.75 -89.69 -0.70 13.03 16 31 H 0.04 1.94 6.33 -2.39 -0.02 1.93 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 1.60 7.60 -2.39 -0.02 1.59 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.05 7.06 -2.39 -0.02 1.03 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 42 H 0.04 1.25 5.07 -2.39 -0.01 1.24 16 43 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 Total: -1.00 -57.85 318.77 3.42 -54.43 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.26 Total: 25.88 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 3.51 Total: -42.91 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -2.38 Total: -83.31 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -57.85 3.42 -54.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309170008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.579 kcal (2) G-P(sol) polarization free energy of solvation -57.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds