Wall clock time and date at job start Mon Mar 30 2020 17:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47342 * 2 1 4 4 H 1.09007 * 109.46407 * 305.31854 * 3 2 1 5 5 C 1.50693 * 109.47167 * 185.31920 * 3 2 1 6 6 H 1.07999 * 120.00098 * 271.13281 * 5 3 2 7 7 C 1.37883 * 120.00179 * 90.85932 * 5 3 2 8 8 N 1.31515 * 120.00113 * 192.77549 * 7 5 3 9 9 Si 1.86793 * 119.99836 * 12.77279 * 7 5 3 10 10 H 1.48499 * 109.47327 * 84.40446 * 9 7 5 11 11 H 1.48501 * 109.47060 * 204.40315 * 9 7 5 12 12 H 1.48503 * 109.47248 * 324.40322 * 9 7 5 13 13 N 1.46894 * 109.47199 * 65.31292 * 3 2 1 14 14 C 1.46900 * 111.00598 * 263.00925 * 13 3 2 15 15 H 1.09003 * 110.01258 * 38.68541 * 14 13 3 16 16 C 1.54269 * 110.02928 * 277.29715 * 14 13 3 17 17 C 1.54893 * 104.19001 * 217.10352 * 16 14 13 18 18 C 1.54885 * 102.75083 * 37.93844 * 17 16 14 19 19 C 1.53873 * 110.03634 * 160.12490 * 14 13 3 20 20 H 1.08998 * 110.03270 * 238.57433 * 19 14 13 21 21 C 1.53003 * 110.03020 * 0.02562 * 19 14 13 22 22 C 1.53000 * 109.46976 * 173.48408 * 21 19 14 23 23 C 1.53001 * 109.47017 * 293.48196 * 21 19 14 24 24 H 1.08998 * 109.46649 * 182.15573 * 1 2 3 25 25 H 1.09002 * 109.47035 * 302.15685 * 1 2 3 26 26 H 1.09000 * 109.46914 * 62.15973 * 1 2 3 27 27 H 1.09000 * 109.47343 * 239.99874 * 2 1 3 28 28 H 1.09000 * 109.47283 * 119.99858 * 2 1 3 29 29 H 0.96991 * 120.00261 * 179.97438 * 8 7 5 30 30 H 1.00902 * 111.00230 * 139.04875 * 13 3 2 31 31 H 1.08995 * 110.48260 * 335.77801 * 16 14 13 32 32 H 1.08996 * 110.48686 * 98.42652 * 16 14 13 33 33 H 1.09001 * 110.75688 * 156.26046 * 17 16 14 34 34 H 1.09003 * 110.75233 * 279.62002 * 17 16 14 35 35 H 1.09000 * 110.48586 * 80.74029 * 18 17 16 36 36 H 1.09006 * 110.48659 * 203.37620 * 18 17 16 37 37 H 1.08996 * 109.47106 * 53.48034 * 21 19 14 38 38 H 1.08996 * 109.47509 * 59.99872 * 22 21 19 39 39 H 1.09004 * 109.47032 * 180.02562 * 22 21 19 40 40 H 1.09008 * 109.46729 * 299.99734 * 22 21 19 41 41 H 1.08998 * 109.47100 * 66.52842 * 23 21 19 42 42 H 1.09002 * 109.46786 * 186.53203 * 23 21 19 43 43 H 1.08998 * 109.47143 * 306.52424 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6010 1.9830 -0.8386 5 6 3.5412 1.4445 -0.1317 6 1 4.1609 1.3978 0.7516 7 6 4.1237 1.5002 -1.3802 8 7 5.4076 1.2510 -1.5186 9 14 3.0893 1.9296 -2.8751 10 1 2.9877 3.4059 -2.9994 11 1 3.7273 1.3729 -4.0950 12 1 1.7303 1.3514 -2.7194 13 7 1.6580 2.0970 1.2583 14 6 0.4293 2.8845 1.0904 15 1 -0.2665 2.3558 0.4389 16 6 0.7653 4.2670 0.4938 17 6 -0.2122 5.2353 1.2053 18 6 -0.2597 4.6740 2.6481 19 6 -0.2224 3.1433 2.4600 20 1 -1.2351 2.7405 2.4737 21 6 0.6137 2.4999 3.5682 22 6 0.0472 2.8999 4.9320 23 6 0.5673 0.9774 3.4233 24 1 -0.3632 -1.0269 0.0387 25 1 -0.3633 0.5470 0.8700 26 1 -0.3633 0.4799 -0.9087 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8173 1.2898 -2.3969 30 1 2.4098 2.6705 1.6105 31 1 1.7979 4.5369 0.7146 32 1 0.5906 4.2709 -0.5820 33 1 0.1790 6.2526 1.1992 34 1 -1.1986 5.1969 0.7431 35 1 0.6074 5.0098 3.2168 36 1 -1.1824 4.9750 3.1443 37 1 1.6459 2.8411 3.4892 38 1 -0.9850 2.5587 5.0110 39 1 0.6431 2.4418 5.7215 40 1 0.0803 3.9846 5.0351 41 1 1.0750 0.6843 2.5044 42 1 1.0647 0.5160 4.2764 43 1 -0.4709 0.6475 3.3860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309170009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:12 Heat of formation + Delta-G solvation = -24.562631 kcal Electronic energy + Delta-G solvation = -18946.761079 eV Core-core repulsion = 16411.733711 eV Total energy + Delta-G solvation = -2535.027368 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.23402 -35.53125 -33.89660 -32.18972 -30.87094 -28.08661 -27.43355 -26.33372 -25.20525 -22.53652 -21.04192 -20.35161 -19.58914 -18.43106 -16.94682 -15.66850 -15.04878 -14.79922 -14.16066 -13.79716 -13.35432 -12.89243 -12.86692 -12.74799 -12.35628 -12.30029 -11.90474 -11.79532 -11.74202 -11.45106 -10.99348 -10.88831 -10.66540 -10.61744 -10.44706 -10.43091 -10.23354 -9.99803 -9.95578 -9.77978 -9.71485 -9.50464 -9.05710 -8.46358 -7.13971 -6.13697 -4.11044 3.24475 3.33852 3.35815 4.38041 4.90365 4.93279 5.02380 5.18466 5.36729 5.49708 5.55071 5.63371 5.85358 5.88085 5.90101 5.93673 6.05911 6.08518 6.10713 6.13679 6.17999 6.21880 6.26679 6.31454 6.34731 6.47376 6.54091 6.61001 6.68005 6.70792 6.74949 6.79842 6.98463 7.05241 7.12197 7.46803 7.50131 7.68712 8.03235 8.43256 8.68534 8.97540 9.52982 10.99388 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.025037 B = 0.008558 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.096424 B = 3270.820176 C = 3621.066990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.102 4.102 3 C 0.182 3.818 4 H 0.011 0.989 5 C -0.524 4.524 6 H 0.077 0.923 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.869 3.131 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.667 5.667 14 C 0.082 3.918 15 H 0.076 0.924 16 C -0.153 4.153 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.077 4.077 20 H 0.061 0.939 21 C -0.065 4.065 22 C -0.150 4.150 23 C -0.159 4.159 24 H 0.034 0.966 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.264 0.736 30 H 0.341 0.659 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.116 0.884 42 H 0.030 0.970 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.890 4.537 6.918 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C 0.074 3.926 4 H 0.029 0.971 5 C -0.563 4.563 6 H 0.095 0.905 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.696 3.304 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.188 1.188 13 N -0.297 5.297 14 C -0.029 4.029 15 H 0.094 0.906 16 C -0.193 4.193 17 C -0.162 4.162 18 C -0.156 4.156 19 C -0.096 4.096 20 H 0.080 0.920 21 C -0.084 4.084 22 C -0.208 4.208 23 C -0.216 4.216 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.160 0.840 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.134 0.866 42 H 0.049 0.951 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.040 3.942 7.021 14.485 hybrid contribution -0.158 1.030 -1.490 1.818 sum -12.198 4.973 5.532 14.287 Atomic orbital electron populations 1.22026 0.98863 0.99706 1.00799 1.21676 0.92351 0.99432 1.00638 1.19594 0.95296 0.90887 0.86869 0.97118 1.21174 0.89528 1.51363 0.94202 0.90457 1.24987 0.94686 0.94376 0.98560 1.69946 1.11274 1.47864 1.23909 0.86978 0.81381 0.79098 0.82937 1.20365 1.21576 1.18824 1.60956 1.05287 1.33149 1.30310 1.22359 0.94225 0.91603 0.94711 0.90591 1.23154 0.99648 0.96833 0.99632 1.22436 0.99217 0.98405 0.96112 1.22449 1.00944 0.95845 0.96385 1.21857 0.98531 0.94024 0.95237 0.92003 1.20793 0.99147 0.96605 0.91863 1.21972 1.00367 1.00446 0.97984 1.22286 1.00273 0.94408 1.04632 0.94697 0.91882 0.94627 0.93501 0.92380 0.92659 0.83965 0.91146 0.92539 0.92338 0.92172 0.91665 0.92564 0.91075 0.93637 0.93458 0.93392 0.86580 0.95055 0.95248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 8.64 37.16 0.32 -2.45 16 2 C -0.10 -2.14 5.04 -26.73 -0.13 -2.28 16 3 C 0.18 4.03 1.76 -68.87 -0.12 3.91 16 4 H 0.01 0.26 4.61 -51.93 -0.24 0.02 16 5 C -0.52 -13.98 8.69 -34.44 -0.30 -14.28 16 6 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 9 Si 0.87 21.21 27.19 -169.99 -4.62 16.58 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -6.22 6.63 56.52 0.37 -5.85 16 13 N -0.67 -12.42 2.05 -99.78 -0.20 -12.62 16 14 C 0.08 1.33 1.99 -66.59 -0.13 1.20 16 15 H 0.08 1.30 5.75 -51.93 -0.30 1.00 16 16 C -0.15 -2.45 6.18 -25.07 -0.16 -2.61 16 17 C -0.12 -1.61 6.91 -24.74 -0.17 -1.78 16 18 C -0.12 -1.48 5.20 -25.08 -0.13 -1.61 16 19 C -0.08 -1.08 2.51 -89.50 -0.22 -1.30 16 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.07 -0.92 1.90 -90.62 -0.17 -1.09 16 22 C -0.15 -1.83 8.90 37.16 0.33 -1.50 16 23 C -0.16 -2.42 8.37 37.16 0.31 -2.11 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 1.06 4.99 -51.93 -0.26 0.80 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.22 7.56 -51.93 -0.39 0.83 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.34 6.67 6.83 -39.29 -0.27 6.40 16 31 H 0.07 1.21 7.64 -51.93 -0.40 0.81 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.82 7.40 -51.93 -0.38 0.44 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.10 6.97 -51.93 -0.36 0.74 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.54 6.85 -51.92 -0.36 0.19 16 41 H 0.12 2.03 3.56 -51.93 -0.18 1.84 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -27.12 311.81 -7.83 -34.95 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.80 Total: 6.14 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -0.68 Total: -23.86 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.57 Total: -38.51 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.62 Total: 16.58 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.12 -7.83 -34.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309170009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.383 kcal (2) G-P(sol) polarization free energy of solvation -27.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds