Wall clock time and date at job start Mon Mar 30 2020 17:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47274 * 2 1 4 4 H 1.09001 * 109.46708 * 182.75391 * 3 2 1 5 5 C 1.50701 * 109.47004 * 62.76234 * 3 2 1 6 6 H 1.08002 * 119.99785 * 244.19335 * 5 3 2 7 7 C 1.37871 * 120.00731 * 64.19219 * 5 3 2 8 8 N 1.31514 * 120.00633 * 194.21916 * 7 5 3 9 9 Si 1.86802 * 119.99829 * 14.21315 * 7 5 3 10 10 H 1.48499 * 109.47068 * 92.47753 * 9 7 5 11 11 H 1.48494 * 109.47400 * 212.48137 * 9 7 5 12 12 H 1.48503 * 109.47078 * 332.48528 * 9 7 5 13 13 N 1.46891 * 109.47485 * 302.75676 * 3 2 1 14 14 C 1.48619 * 110.98623 * 308.98721 * 13 3 2 15 15 C 1.57053 * 105.06709 * 171.12384 * 14 13 3 16 16 C 1.54542 * 105.44188 * 130.77459 * 15 14 13 17 17 C 1.54625 * 116.67789 * 302.12693 * 16 15 14 18 18 C 1.57122 * 105.23174 * 302.27245 * 17 16 15 19 19 C 1.54626 * 105.21370 * 130.68807 * 18 17 16 20 20 C 1.54545 * 116.69094 * 302.26430 * 19 18 17 21 21 C 1.48689 * 111.00299 * 174.03675 * 13 3 2 22 22 H 1.09000 * 109.46631 * 294.96196 * 1 2 3 23 23 H 1.08995 * 109.46776 * 54.95550 * 1 2 3 24 24 H 1.08993 * 109.47203 * 174.96146 * 1 2 3 25 25 H 1.08998 * 109.46528 * 239.99948 * 2 1 3 26 26 H 1.08997 * 109.46938 * 120.00480 * 2 1 3 27 27 H 0.97000 * 120.00137 * 180.02562 * 8 7 5 28 28 H 1.08997 * 110.51149 * 52.12659 * 14 13 3 29 29 H 1.08997 * 110.09508 * 289.90316 * 14 13 3 30 30 H 1.09000 * 110.26725 * 11.75053 * 15 14 13 31 31 H 1.09000 * 110.26662 * 249.79829 * 15 14 13 32 32 H 1.09008 * 108.00592 * 63.93441 * 16 15 14 33 33 H 1.08997 * 108.01592 * 180.30915 * 16 15 14 34 34 H 1.09004 * 110.28246 * 61.19682 * 17 16 15 35 35 H 1.08991 * 110.28435 * 183.19826 * 17 16 15 36 36 H 1.08995 * 110.28720 * 249.61386 * 18 17 16 37 37 H 1.09003 * 110.28594 * 11.61727 * 18 17 16 38 38 H 1.08998 * 108.00355 * 64.08402 * 19 18 17 39 39 H 1.08996 * 108.00510 * 180.44525 * 19 18 17 40 40 H 1.08997 * 110.26885 * 61.14102 * 20 19 18 41 41 H 1.09001 * 110.27170 * 183.11217 * 20 19 18 42 42 H 1.09000 * 110.32320 * 313.57549 * 21 13 3 43 43 H 1.08999 * 110.46086 * 191.39232 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1289 1.4427 -0.0494 5 6 1.5944 2.1328 1.2633 6 1 0.9154 2.9710 1.2099 7 6 2.0534 1.6945 2.4872 8 7 1.4656 2.0971 3.5927 9 14 3.5101 0.5285 2.5755 10 1 4.7629 1.3118 2.7240 11 1 3.3504 -0.3758 3.7424 12 1 3.5752 -0.2775 1.3299 13 7 1.4968 2.1539 -1.1646 14 6 1.7323 1.3859 -2.4150 15 6 0.9077 2.1398 -3.5187 16 6 1.8848 2.3371 -4.6996 17 6 3.1887 3.1122 -4.3996 18 6 2.7220 4.5077 -3.8486 19 6 3.5344 4.7238 -2.5509 20 6 3.3887 3.6459 -1.4530 21 6 1.8541 3.5966 -1.1221 22 1 -0.3632 0.4337 0.9317 23 1 -0.3633 0.5901 -0.8413 24 1 -0.3633 -1.0236 -0.0902 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.7888 1.7890 4.4538 28 1 1.3738 0.3622 -2.3077 29 1 2.7933 1.3927 -2.6645 30 1 0.5690 3.1055 -3.1433 31 1 0.0550 1.5368 -3.8308 32 1 2.1579 1.3524 -5.0791 33 1 1.3539 2.8647 -5.4919 34 1 3.7764 2.5862 -3.6472 35 1 3.7711 3.2394 -5.3121 36 1 2.9463 5.2931 -4.5702 37 1 1.6542 4.4898 -3.6302 38 1 4.5885 4.7901 -2.8203 39 1 3.2384 5.6820 -2.1237 40 1 3.7258 2.6789 -1.8262 41 1 3.9594 3.9284 -0.5683 42 1 1.6680 4.0036 -0.1282 43 1 1.2876 4.1517 -1.8697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000321975812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:30 Heat of formation + Delta-G solvation = -7.816602 kcal Electronic energy + Delta-G solvation = -19101.421809 eV Core-core repulsion = 16567.120603 eV Total energy + Delta-G solvation = -2534.301206 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92659 -37.11943 -34.43080 -34.31909 -33.05808 -29.68829 -28.34330 -27.57345 -25.65274 -24.49289 -23.41821 -21.38223 -20.32029 -20.13123 -18.23606 -17.31368 -16.78082 -16.44375 -15.63872 -15.20329 -15.07560 -14.59378 -14.54516 -14.12372 -13.93932 -13.76702 -13.38948 -13.11597 -12.90807 -12.81236 -12.39637 -12.30218 -12.25563 -12.02110 -11.84582 -11.69810 -11.62755 -11.35198 -11.24693 -11.10522 -10.84273 -10.79292 -10.76815 -10.47477 -8.40847 -8.21465 -6.15430 1.31121 1.36274 1.44025 2.38482 3.12410 3.26662 3.88352 4.00556 4.08847 4.28036 4.29855 4.32308 4.40855 4.45498 4.53980 4.57806 4.61754 4.75819 4.83252 4.92492 4.94498 4.99602 5.04634 5.13299 5.14614 5.20706 5.22478 5.26933 5.40725 5.42847 5.44611 5.46581 5.50473 5.56057 5.64364 5.66427 5.79063 5.88232 6.22179 6.63675 6.89690 7.01629 7.47201 8.95078 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.008607 C = 0.007646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.288727 B = 3252.548966 C = 3661.187898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.121 4.121 3 C 0.204 3.796 4 H -0.022 1.022 5 C -0.483 4.483 6 H 0.040 0.960 7 C 0.018 3.982 8 N -0.945 5.945 9 Si 0.913 3.087 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.230 1.230 13 N -0.577 5.577 14 C 0.067 3.933 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.146 4.146 21 C 0.090 3.910 22 H 0.026 0.974 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.260 0.740 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.971 0.168 -17.376 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.159 4.159 3 C 0.096 3.904 4 H -0.005 1.005 5 C -0.521 4.521 6 H 0.058 0.942 7 C -0.179 4.179 8 N -0.587 5.587 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.154 1.154 13 N -0.303 5.303 14 C -0.060 4.060 15 C -0.149 4.149 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.186 4.186 21 C -0.037 4.037 22 H 0.045 0.955 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.534 0.159 -17.197 17.383 hybrid contribution 1.510 -0.331 1.114 1.905 sum 4.044 -0.172 -16.083 16.584 Atomic orbital electron populations 1.21361 0.95123 0.99309 1.01386 1.21963 0.97594 0.97224 0.99092 1.19220 0.90992 0.91250 0.88953 1.00507 1.21115 1.26129 1.14921 0.89965 0.94158 1.25573 0.98899 0.97942 0.95478 1.70097 1.41654 1.48543 0.98379 0.86416 0.80689 0.80101 0.78892 1.21158 1.21727 1.15350 1.60002 1.66080 1.01758 1.02440 1.23326 0.97624 0.96915 0.88094 1.22696 0.97208 1.00642 0.94358 1.22076 0.95615 1.00144 0.97713 1.22754 0.96798 0.95731 1.00652 1.22754 0.99837 0.97303 0.95491 1.22040 1.00059 0.97852 0.95259 1.23165 0.98649 0.99171 0.97567 1.23108 0.92556 0.87615 1.00422 0.95466 0.91837 0.93537 0.92558 0.94511 0.93082 0.90759 0.94868 0.91336 0.90886 0.92794 0.91905 0.92662 0.90539 0.90336 0.91290 0.93010 0.93208 0.92121 0.94003 0.92836 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.62 9.27 71.98 0.67 -3.95 16 2 C -0.12 -5.08 4.41 30.59 0.13 -4.94 16 3 C 0.20 9.29 1.19 44.17 0.05 9.34 16 4 H -0.02 -1.07 6.02 -2.39 -0.01 -1.08 16 5 C -0.48 -26.75 7.06 25.60 0.18 -26.57 16 6 H 0.04 2.51 6.81 -2.91 -0.02 2.49 16 7 C 0.02 1.03 5.36 84.65 0.45 1.48 16 8 N -0.95 -59.12 13.96 21.44 0.30 -58.82 16 9 Si 0.91 44.35 25.79 68.60 1.77 46.12 16 10 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.23 -10.22 5.35 99.48 0.53 -9.69 16 13 N -0.58 -22.17 3.11 -848.90 -2.64 -24.82 16 14 C 0.07 2.05 4.52 87.39 0.40 2.45 16 15 C -0.11 -2.77 5.91 32.54 0.19 -2.58 16 16 C -0.12 -2.39 4.85 31.67 0.15 -2.23 16 17 C -0.12 -2.53 5.83 32.60 0.19 -2.34 16 18 C -0.12 -2.48 5.82 32.60 0.19 -2.29 16 19 C -0.11 -2.92 4.84 31.67 0.15 -2.77 16 20 C -0.15 -4.88 5.06 32.55 0.16 -4.72 16 21 C 0.09 3.32 5.38 87.39 0.47 3.79 16 22 H 0.03 1.27 7.48 -2.39 -0.02 1.25 16 23 H 0.06 2.44 6.85 -2.39 -0.02 2.43 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 2.05 6.31 -2.39 -0.02 2.03 16 26 H 0.04 1.64 4.72 -2.39 -0.01 1.63 16 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.07 2.29 5.53 -2.39 -0.01 2.28 16 29 H 0.03 1.02 4.47 -2.39 -0.01 1.01 16 30 H 0.07 1.85 4.57 -2.39 -0.01 1.84 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.35 4.54 -2.38 -0.01 1.34 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.56 4.54 -2.39 -0.01 1.55 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 2.06 4.21 -2.39 -0.01 2.05 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.05 2.41 5.94 -2.39 -0.01 2.39 16 43 H 0.08 2.71 4.47 -2.39 -0.01 2.70 16 Total: -1.00 -62.10 289.95 3.64 -58.46 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.81 Total: 14.40 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 3.40 Total: -35.35 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -2.34 Total: -83.64 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.77 Total: 46.12 kcal Total: -62.10 3.64 -58.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321975812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.646 kcal (2) G-P(sol) polarization free energy of solvation -62.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds