Wall clock time and date at job start Mon Mar 30 2020 17:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47278 * 2 1 4 4 H 1.08998 * 109.46862 * 55.00856 * 3 2 1 5 5 C 1.52997 * 109.47482 * 295.00291 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 3 8 8 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 9 9 C 1.52997 * 109.46975 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.46891 * 299.99597 * 7 6 5 11 11 C 1.52997 * 109.46978 * 60.00410 * 10 7 6 12 12 H 1.09000 * 109.47140 * 179.97438 * 11 10 7 13 13 N 1.46902 * 109.47489 * 59.99517 * 11 10 7 14 14 C 1.46901 * 110.99480 * 85.00020 * 13 11 10 15 15 C 1.53000 * 109.46938 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47389 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99938 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00261 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99668 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00131 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47464 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47173 * 119.99758 * 20 18 16 23 23 H 1.48494 * 109.47304 * 239.99804 * 20 18 16 24 24 H 1.08998 * 109.46891 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46593 * 299.99796 * 1 2 3 27 27 H 1.09002 * 109.47097 * 240.00184 * 2 1 3 28 28 H 1.09006 * 109.47311 * 120.00941 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 30 30 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 31 31 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 6 5 3 33 33 H 1.09001 * 109.47375 * 59.99630 * 9 7 6 34 34 H 1.09002 * 109.47045 * 179.97438 * 9 7 6 35 35 H 1.09000 * 109.47140 * 299.99612 * 9 7 6 36 36 H 1.09002 * 109.47097 * 180.02562 * 10 7 6 37 37 H 1.09001 * 109.47142 * 300.00176 * 10 7 6 38 38 H 1.00897 * 110.99993 * 208.95314 * 13 11 10 39 39 H 1.09000 * 109.47740 * 299.99755 * 14 13 11 40 40 H 1.08997 * 109.47681 * 60.00508 * 14 13 11 41 41 H 1.08999 * 109.47231 * 300.00065 * 15 14 13 42 42 H 1.09001 * 109.47352 * 60.00025 * 15 14 13 43 43 H 0.97007 * 119.99843 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 2.1459 3.5688 -1.3074 7 6 3.6707 3.5700 -1.1821 8 1 4.1050 3.0308 -2.0239 9 6 4.1812 5.0123 -1.1816 10 6 4.0755 2.8860 0.1253 11 6 3.5649 1.4437 0.1254 12 1 3.8537 0.9562 1.0566 13 7 4.1501 0.7169 -1.0092 14 6 5.4741 0.1816 -0.6650 15 6 6.0505 -0.5664 -1.8688 16 6 7.4090 -1.1149 -1.5160 17 1 7.8201 -0.9472 -0.5314 18 6 8.1273 -1.8309 -2.4500 19 7 7.6265 -2.0356 -3.6488 20 14 9.8109 -2.5115 -2.0124 21 1 10.1433 -2.1474 -0.6117 22 1 9.7979 -3.9902 -2.1492 23 1 10.8297 -1.9387 -2.9283 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 0.5489 2.1253 -1.3968 30 1 2.0699 1.5875 -2.1491 31 1 1.8571 4.0563 -2.2386 32 1 1.7117 4.1081 -0.4656 33 1 3.7470 5.5512 -0.3395 34 1 5.2675 5.0132 -1.0919 35 1 3.8929 5.5001 -2.1128 36 1 5.1618 2.8872 0.2148 37 1 3.6412 3.4252 0.9671 38 1 3.5341 -0.0173 -1.3247 39 1 6.1390 1.0022 -0.3953 40 1 5.3814 -0.5029 0.1781 41 1 5.3859 -1.3870 -2.1389 42 1 6.1434 0.1185 -2.7117 43 1 8.1317 -2.5396 -4.3059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336724659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:55 Heat of formation + Delta-G solvation = -62.437953 kcal Electronic energy + Delta-G solvation = -17998.651883 eV Core-core repulsion = 15461.982117 eV Total energy + Delta-G solvation = -2536.669765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59907 -36.58028 -35.59931 -34.68597 -31.86803 -31.15789 -29.28463 -27.14860 -25.89802 -23.88592 -22.78702 -22.48963 -21.04747 -19.87860 -18.44156 -17.00729 -16.45574 -16.29270 -15.74248 -15.32254 -15.19904 -14.79469 -14.54380 -14.29881 -13.96342 -13.65495 -13.27281 -13.08767 -12.97884 -12.85749 -12.82719 -12.76343 -12.37295 -12.12317 -12.01213 -11.93071 -11.73412 -11.55328 -11.34650 -11.24934 -11.09840 -10.88148 -10.62261 -10.56311 -9.13966 -8.21437 -6.32899 1.38833 1.39406 1.52780 2.39504 3.11881 3.41565 3.75473 3.83106 3.97880 4.18107 4.22625 4.38360 4.47544 4.49382 4.59451 4.64151 4.66261 4.73253 4.78851 4.89258 4.90564 4.97157 5.00716 5.06067 5.07881 5.12781 5.18142 5.24869 5.27704 5.34842 5.44048 5.47397 5.55018 5.56780 5.62380 5.68643 5.77059 5.83781 6.17542 6.36422 6.63690 6.84799 7.36428 8.90957 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.005530 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.872462 B = 5061.804686 C = 5719.026366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C -0.077 4.077 4 H 0.087 0.913 5 C -0.107 4.107 6 C -0.103 4.103 7 C -0.085 4.085 8 H 0.053 0.947 9 C -0.143 4.143 10 C -0.097 4.097 11 C 0.087 3.913 12 H 0.029 0.971 13 N -0.682 5.682 14 C 0.088 3.912 15 C 0.035 3.965 16 C -0.544 4.544 17 H 0.058 0.942 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.277 1.277 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.335 0.665 39 H 0.052 0.948 40 H 0.011 0.989 41 H -0.011 1.011 42 H -0.007 1.007 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 10.266 8.167 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.096 4.096 4 H 0.105 0.895 5 C -0.144 4.144 6 C -0.141 4.141 7 C -0.104 4.104 8 H 0.072 0.928 9 C -0.200 4.200 10 C -0.135 4.135 11 C -0.023 4.023 12 H 0.047 0.953 13 N -0.315 5.315 14 C -0.041 4.041 15 C -0.002 4.002 16 C -0.582 4.582 17 H 0.076 0.924 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.791 3.209 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.203 1.203 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.156 0.844 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.007 0.993 42 H 0.011 0.989 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.640 10.758 7.721 19.011 hybrid contribution 0.990 -1.441 0.338 1.780 sum -12.651 9.317 8.059 17.658 Atomic orbital electron populations 1.21744 0.94099 1.01857 1.02454 1.21626 0.97458 0.96326 1.01063 1.21270 0.92815 0.96128 0.99350 0.89507 1.21514 1.00371 0.95783 0.96764 1.21496 0.94333 0.96422 1.01804 1.20955 0.96290 0.95418 0.97705 0.92824 1.21808 1.00318 0.95939 1.01962 1.21534 0.99456 0.94412 0.98066 1.21625 0.94616 0.94860 0.91207 0.95288 1.60580 1.03844 1.31437 1.35650 1.21749 0.90139 0.96005 0.96253 1.18885 0.94304 0.93528 0.93517 1.21638 1.03472 1.34091 0.99039 0.92423 1.25971 1.02499 0.96456 0.94754 1.70120 1.39838 1.41545 1.05667 0.85372 0.78806 0.78031 0.78662 1.18685 1.20203 1.20256 0.91965 0.92739 0.91852 0.93185 0.92812 0.90753 0.93157 0.92033 0.91155 0.91741 0.93976 0.92505 0.94241 0.90623 0.84447 0.92952 0.97076 0.99292 0.98876 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.67 71.98 0.70 -1.85 16 2 C -0.13 -2.86 5.04 30.59 0.15 -2.71 16 3 C -0.08 -1.74 1.96 -10.79 -0.02 -1.76 16 4 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.11 -2.38 4.80 30.59 0.15 -2.23 16 6 C -0.10 -2.20 5.20 30.59 0.16 -2.04 16 7 C -0.09 -2.22 2.56 -10.80 -0.03 -2.24 16 8 H 0.05 1.79 7.60 -2.39 -0.02 1.77 16 9 C -0.14 -3.20 9.19 71.98 0.66 -2.54 16 10 C -0.10 -2.61 4.81 30.59 0.15 -2.46 16 11 C 0.09 2.49 2.30 44.92 0.10 2.60 16 12 H 0.03 0.88 7.80 -2.39 -0.02 0.86 16 13 N -0.68 -24.70 4.82 -491.56 -2.37 -27.07 16 14 C 0.09 3.85 5.42 86.30 0.47 4.32 16 15 C 0.04 1.93 5.23 29.85 0.16 2.09 16 16 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 18 C 0.00 0.06 5.46 84.65 0.46 0.53 16 19 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 20 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 H 0.06 1.04 6.56 -2.39 -0.02 1.02 16 25 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 1.30 6.42 -2.39 -0.02 1.28 16 28 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.07 1.38 6.57 -2.39 -0.02 1.36 16 30 H 0.05 1.37 7.48 -2.39 -0.02 1.35 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 1.22 7.46 -2.39 -0.02 1.20 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.34 12.10 6.09 -89.70 -0.55 11.55 16 39 H 0.05 2.33 7.44 -2.39 -0.02 2.32 16 40 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 41 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.26 15.31 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -63.83 324.95 3.67 -60.16 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.39 Total: 17.43 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 3.34 Total: -40.03 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -2.09 Total: -84.71 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -63.83 3.67 -60.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336724659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.282 kcal (2) G-P(sol) polarization free energy of solvation -63.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds