Wall clock time and date at job start Mon Mar 30 2020 17:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47320 * 2 1 4 4 C 1.53005 * 109.46918 * 120.00040 * 2 1 3 5 5 C 1.52997 * 109.46966 * 179.97438 * 4 2 1 6 6 H 1.09009 * 109.46745 * 60.00352 * 5 4 2 7 7 N 1.46896 * 109.47254 * 179.97438 * 5 4 2 8 8 C 1.46907 * 111.00276 * 275.00584 * 7 5 4 9 9 C 1.53004 * 109.47025 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.46637 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00546 * 0.27598 * 10 9 8 12 12 C 1.37885 * 119.99721 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46986 * 90.00256 * 14 12 10 16 16 H 1.48496 * 109.47029 * 210.00273 * 14 12 10 17 17 H 1.48499 * 109.47352 * 330.00102 * 14 12 10 18 18 C 1.52999 * 109.47412 * 300.00321 * 5 4 2 19 19 C 1.52996 * 109.47260 * 59.99925 * 18 5 4 20 20 C 1.52999 * 109.47260 * 179.97438 * 19 18 5 21 21 C 1.52999 * 109.47096 * 59.99970 * 19 18 5 22 22 C 1.52996 * 109.46921 * 299.99957 * 19 18 5 23 23 H 1.08995 * 109.47359 * 299.99807 * 1 2 3 24 24 H 1.09006 * 109.47194 * 59.99927 * 1 2 3 25 25 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47101 * 60.00180 * 4 2 1 27 27 H 1.08995 * 109.47231 * 300.00231 * 4 2 1 28 28 H 1.00896 * 111.00385 * 151.04924 * 7 5 4 29 29 H 1.09000 * 109.46806 * 59.99929 * 8 7 5 30 30 H 1.08997 * 109.46869 * 299.99434 * 8 7 5 31 31 H 1.08992 * 109.47421 * 60.00076 * 9 8 7 32 32 H 1.08997 * 109.46955 * 299.99529 * 9 8 7 33 33 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 34 34 H 1.09010 * 109.46747 * 179.97438 * 18 5 4 35 35 H 1.08995 * 109.47223 * 299.99549 * 18 5 4 36 36 H 1.08996 * 109.47290 * 180.02562 * 20 19 18 37 37 H 1.09010 * 109.46747 * 299.99957 * 20 19 18 38 38 H 1.08995 * 109.47223 * 59.99624 * 20 19 18 39 39 H 1.09003 * 109.47242 * 299.99826 * 21 19 18 40 40 H 1.08997 * 109.47368 * 60.00146 * 21 19 18 41 41 H 1.09006 * 109.47237 * 179.97438 * 21 19 18 42 42 H 1.08998 * 109.47535 * 299.99610 * 22 19 18 43 43 H 1.09006 * 109.47194 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7219 1.2490 6 1 3.9336 0.3058 1.2488 7 7 4.0596 -1.4138 2.4487 8 6 4.1228 -0.4981 3.5957 9 6 4.6354 -1.2534 4.8236 10 6 4.6997 -0.3142 6.0003 11 1 4.4003 0.7171 5.8852 12 6 5.1349 -0.7730 7.2256 13 7 5.4944 -2.0301 7.3672 14 14 5.2153 0.3914 8.6841 15 1 3.9211 0.3633 9.4118 16 1 6.3061 -0.0339 9.5975 17 1 5.4825 1.7705 8.2024 18 6 4.0794 -1.4434 -0.0003 19 6 3.5695 -0.7221 -1.2495 20 6 4.0796 -1.4433 -2.4987 21 6 4.0800 0.7202 -1.2497 22 6 2.0396 -0.7217 -1.2492 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6766 -1.7490 1.2493 27 1 1.6766 -0.2075 2.1392 28 1 4.9570 -1.8422 2.2781 29 1 3.1276 -0.1040 3.8013 30 1 4.7995 0.3251 3.3665 31 1 5.6305 -1.6479 4.6183 32 1 3.9585 -2.0764 5.0527 33 1 5.8009 -2.3527 8.2291 34 1 5.1695 -1.4433 -0.0006 35 1 3.7159 -2.4709 -0.0001 36 1 3.7167 -0.9292 -3.3887 37 1 5.1697 -1.4432 -2.4986 38 1 3.7164 -2.4709 -2.4988 39 1 3.7169 1.2343 -0.3597 40 1 5.1700 0.7199 -1.2499 41 1 3.7171 1.2340 -2.1400 42 1 1.6758 -1.7492 -1.2491 43 1 1.6762 -0.2082 -2.1394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336754197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:09 Heat of formation + Delta-G solvation = -46.152154 kcal Electronic energy + Delta-G solvation = -17794.835816 eV Core-core repulsion = 15258.872256 eV Total energy + Delta-G solvation = -2535.963560 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.82832 -35.65720 -33.98907 -32.99162 -30.66660 -27.77856 -27.38070 -26.61310 -26.26440 -23.92637 -20.81915 -20.65414 -20.18099 -18.37675 -16.28238 -15.35545 -15.07332 -14.84985 -14.69670 -14.37456 -14.02819 -13.41172 -13.15310 -12.94368 -12.58109 -12.42743 -12.21634 -11.92883 -11.84410 -11.77615 -11.40098 -11.25512 -10.99257 -10.89867 -10.75524 -10.73463 -10.57222 -10.27574 -10.18315 -9.91865 -9.73743 -9.27414 -9.08980 -8.32403 -7.71796 -5.97051 -3.99402 3.33802 3.39701 3.43018 4.42188 4.54908 4.60399 4.68923 4.94916 5.10375 5.22558 5.31855 5.38833 5.40712 5.46808 5.53087 5.57672 5.65135 5.68691 5.75882 5.79720 5.86125 5.87846 5.97931 6.03420 6.06913 6.13316 6.24161 6.29620 6.35510 6.39354 6.43894 6.50746 6.51615 6.69919 7.05088 7.57915 7.78348 7.88574 8.04231 8.13930 8.47639 9.08034 9.64175 11.14435 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.035722 B = 0.004518 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.647756 B = 6196.590561 C = 6526.685997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.069 0.931 4 C -0.100 4.100 5 C 0.086 3.914 6 H 0.040 0.960 7 N -0.690 5.690 8 C 0.068 3.932 9 C 0.025 3.975 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.108 4.108 19 C -0.062 4.062 20 C -0.140 4.140 21 C -0.146 4.146 22 C -0.100 4.100 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.335 0.665 29 H 0.057 0.943 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.736 2.994 -19.234 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.087 0.913 4 C -0.138 4.138 5 C -0.024 4.024 6 H 0.057 0.943 7 N -0.320 5.320 8 C -0.061 4.061 9 C -0.012 4.012 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.146 4.146 19 C -0.063 4.063 20 C -0.197 4.197 21 C -0.203 4.203 22 C -0.138 4.138 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.153 0.847 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.281 2.622 -18.922 20.108 hybrid contribution 0.882 1.119 0.704 1.589 sum -5.398 3.741 -18.218 19.365 Atomic orbital electron populations 1.21808 0.95501 1.01683 1.01276 1.21195 0.95154 0.99782 0.95218 0.91296 1.21564 0.94898 1.00854 0.96481 1.21524 0.95327 0.95954 0.89618 0.94262 1.60587 1.33001 1.34246 1.04183 1.22172 0.99384 0.93469 0.91040 1.19065 0.96183 0.95787 0.90199 1.21191 1.43759 0.96403 0.94610 0.92827 1.25001 0.95450 0.95078 0.98813 1.69976 1.44586 1.14369 1.24370 0.86599 0.77686 0.81162 0.82575 1.20637 1.21223 1.19940 1.21764 0.99848 0.99747 0.93243 1.20497 0.95367 0.95504 0.94937 1.21855 1.00866 1.00135 0.96871 1.21992 1.00734 0.95787 1.01784 1.21637 0.94189 1.00614 0.97338 0.92702 0.93156 0.92770 0.91561 0.92064 0.84730 0.92484 0.96896 0.96880 0.95715 0.93026 0.92358 0.91255 0.92928 0.92783 0.92707 0.91899 0.92941 0.93052 0.91979 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 2 C -0.09 -1.06 2.45 -90.62 -0.22 -1.29 16 3 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 4 C -0.10 -1.40 4.71 -26.73 -0.13 -1.53 16 5 C 0.09 1.27 2.22 -67.72 -0.15 1.12 16 6 H 0.04 0.61 6.09 -51.92 -0.32 0.30 16 7 N -0.69 -12.63 6.31 -106.72 -0.67 -13.31 16 8 C 0.07 1.47 5.42 -3.82 -0.02 1.45 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 10 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 11 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 14 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 18 C -0.11 -1.34 4.00 -26.73 -0.11 -1.45 16 19 C -0.06 -0.65 0.77 -154.51 -0.12 -0.77 16 20 C -0.14 -1.27 8.47 37.16 0.31 -0.96 16 21 C -0.15 -1.50 7.78 37.16 0.29 -1.22 16 22 C -0.10 -1.02 4.01 -26.73 -0.11 -1.13 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 27 H 0.06 0.95 7.45 -51.93 -0.39 0.57 16 28 H 0.33 5.96 8.35 -39.29 -0.33 5.64 16 29 H 0.06 1.25 7.44 -51.93 -0.39 0.86 16 30 H 0.01 0.28 8.05 -51.93 -0.42 -0.14 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.06 0.72 8.12 -51.92 -0.42 0.30 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.71 4.81 -51.93 -0.25 0.46 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -29.74 326.05 -8.81 -38.55 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.30 Total: -0.33 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -0.46 Total: -20.16 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.06 Total: -39.90 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.74 -8.81 -38.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336754197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.602 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds