Wall clock time and date at job start Mon Mar 30 2020 17:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46715 * 2 1 4 4 C 1.53002 * 109.47147 * 119.99332 * 2 1 3 5 5 C 1.52993 * 109.47005 * 60.78442 * 4 2 1 6 6 H 1.09005 * 109.47175 * 301.35059 * 5 4 2 7 7 C 1.52997 * 109.47344 * 181.35044 * 5 4 2 8 8 C 1.53001 * 109.47269 * 61.35057 * 5 4 2 9 9 N 1.46902 * 109.47211 * 174.28415 * 8 5 4 10 10 C 1.46902 * 110.99950 * 185.79650 * 9 8 5 11 11 C 1.52996 * 109.47221 * 174.05367 * 10 9 8 12 12 C 1.50698 * 115.54881 * 293.91029 * 11 10 9 13 13 H 1.08002 * 120.00051 * 114.63266 * 12 11 10 14 14 C 1.37880 * 120.00025 * 294.90579 * 12 11 10 15 15 N 1.31519 * 119.99993 * 169.32146 * 14 12 11 16 16 Si 1.86794 * 120.00074 * 349.32868 * 14 12 11 17 17 H 1.48499 * 109.47175 * 84.87575 * 16 14 12 18 18 H 1.48498 * 109.47414 * 204.88055 * 16 14 12 19 19 H 1.48502 * 109.46804 * 324.87774 * 16 14 12 20 20 C 1.53004 * 117.50469 * 79.57868 * 11 10 9 21 21 C 1.52999 * 117.50355 * 148.24198 * 11 10 9 22 22 H 1.08994 * 109.47492 * 52.27693 * 1 2 3 23 23 H 1.09003 * 109.46801 * 172.27204 * 1 2 3 24 24 H 1.09002 * 109.47501 * 292.27048 * 1 2 3 25 25 H 1.08998 * 109.47400 * 240.00087 * 2 1 3 26 26 H 1.09003 * 109.47042 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46798 * 299.99764 * 3 2 1 28 28 H 1.08993 * 109.47974 * 59.99737 * 3 2 1 29 29 H 1.08995 * 109.47452 * 300.78547 * 4 2 1 30 30 H 1.09003 * 109.46795 * 180.78330 * 4 2 1 31 31 H 1.08997 * 109.47165 * 301.76356 * 7 5 4 32 32 H 1.09001 * 109.47153 * 61.76543 * 7 5 4 33 33 H 1.09002 * 109.47419 * 181.76253 * 7 5 4 34 34 H 1.09000 * 109.47229 * 54.28371 * 8 5 4 35 35 H 1.08999 * 109.46962 * 294.27837 * 8 5 4 36 36 H 1.00896 * 111.00504 * 61.83460 * 9 8 5 37 37 H 1.09002 * 109.47577 * 54.04591 * 10 9 8 38 38 H 1.09001 * 109.46709 * 294.04878 * 10 9 8 39 39 H 0.97004 * 119.99793 * 179.97438 * 15 14 12 40 40 H 1.08991 * 117.50484 * 215.00514 * 20 11 10 41 41 H 1.09003 * 117.49453 * 0.02877 * 20 11 10 42 42 H 1.09002 * 117.49658 * 359.97432 * 21 11 10 43 43 H 1.08995 * 117.50094 * 144.97118 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5462 -2.1691 1.2396 6 1 0.4567 -2.1813 1.2084 7 6 2.0280 -2.8808 2.5054 8 6 2.0998 -2.8886 0.0080 9 7 1.7399 -4.3115 0.0691 10 6 2.3702 -5.0614 -1.0256 11 6 2.0952 -6.5556 -0.8448 12 6 2.7316 -7.1919 0.3640 13 1 2.1121 -7.5804 1.1588 14 6 4.1048 -7.2732 0.4578 15 7 4.6664 -7.6320 1.5916 16 14 5.1675 -6.8736 -1.0255 17 1 5.3984 -5.4080 -1.0886 18 1 6.4707 -7.5752 -0.9043 19 1 4.4783 -7.3199 -2.2628 20 6 0.7252 -7.0796 -1.2801 21 6 1.9696 -7.4088 -2.1085 22 1 -0.3634 0.6287 -0.8128 23 1 -0.3633 -1.0184 -0.1382 24 1 -0.3634 0.3895 0.9510 25 1 1.8934 -0.5138 -0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9563 -0.8901 28 1 1.6766 1.9565 0.8899 29 1 1.6653 -0.2154 2.1392 30 1 3.1299 -0.7089 1.2563 31 1 3.1162 -2.8413 2.5526 32 1 1.6082 -2.3872 3.3819 33 1 1.7028 -3.9209 2.4837 34 1 3.1850 -2.7889 -0.0138 35 1 1.6759 -2.4450 -0.8929 36 1 0.7382 -4.4319 0.0602 37 1 3.4460 -4.8859 -1.0141 38 1 1.9580 -4.7288 -1.9782 39 1 5.6325 -7.6895 1.6575 40 1 0.2842 -7.8845 -0.6923 41 1 0.0200 -6.3599 -1.6957 42 1 2.0825 -6.9056 -3.0688 43 1 2.3476 -8.4303 -2.0657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336763000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:22 Heat of formation + Delta-G solvation = -2.997887 kcal Electronic energy + Delta-G solvation = -17910.713842 eV Core-core repulsion = 15376.621591 eV Total energy + Delta-G solvation = -2534.092251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.18524 -37.02809 -34.55520 -31.99162 -31.86712 -27.28235 -26.66346 -26.37042 -25.16519 -22.93952 -21.42700 -20.73355 -19.36314 -18.69194 -16.27610 -15.55843 -15.28581 -14.72012 -14.37657 -14.09050 -13.93272 -13.47415 -13.06484 -12.91422 -12.47621 -12.33417 -12.11064 -12.03767 -11.65943 -11.60986 -11.46832 -11.08389 -10.92410 -10.77848 -10.48855 -10.47107 -10.31861 -10.16972 -10.05833 -9.98151 -9.36154 -8.98357 -8.52700 -8.27185 -7.52126 -5.96640 -3.91573 3.34110 3.44420 3.50882 4.53441 4.63978 4.78168 4.88973 4.94997 5.15738 5.22255 5.39218 5.49334 5.53444 5.62889 5.66696 5.68626 5.77617 5.89365 5.94148 5.96951 6.00021 6.03532 6.14968 6.17162 6.23198 6.25465 6.30881 6.36655 6.38329 6.49983 6.52170 6.62319 6.73585 6.80767 7.03753 7.17825 7.19993 7.83941 7.91185 8.15950 8.66622 9.07905 9.68822 11.16179 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.025743 B = 0.006207 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.429816 B = 4510.015746 C = 4781.299888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.087 4.087 6 H 0.065 0.935 7 C -0.137 4.137 8 C 0.063 3.937 9 N -0.660 5.660 10 C 0.096 3.904 11 C 0.008 3.992 12 C -0.459 4.459 13 H 0.074 0.926 14 C 0.080 3.920 15 N -0.899 5.899 16 Si 0.867 3.133 17 H -0.280 1.280 18 H -0.296 1.296 19 H -0.255 1.255 20 C -0.185 4.185 21 C -0.198 4.198 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.017 0.983 36 H 0.332 0.668 37 H 0.065 0.935 38 H 0.001 0.999 39 H 0.261 0.739 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 14.361 -3.820 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.105 4.105 6 H 0.084 0.916 7 C -0.194 4.194 8 C -0.066 4.066 9 N -0.289 5.289 10 C -0.033 4.033 11 C 0.007 3.993 12 C -0.496 4.496 13 H 0.092 0.908 14 C -0.121 4.121 15 N -0.536 5.536 16 Si 0.695 3.305 17 H -0.207 1.207 18 H -0.223 1.223 19 H -0.179 1.179 20 C -0.223 4.223 21 C -0.237 4.237 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.149 0.851 37 H 0.083 0.917 38 H 0.019 0.981 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.710 14.164 -3.266 15.617 hybrid contribution 0.220 0.536 -1.589 1.691 sum -5.490 14.700 -4.855 16.425 Atomic orbital electron populations 1.21862 0.95497 1.01724 1.01252 1.21191 0.95823 0.95814 0.99196 1.21844 1.00888 0.96335 1.01301 1.21705 1.00649 0.95215 0.97048 1.21136 0.99843 0.93452 0.96102 0.91643 1.21682 1.00925 1.02060 0.94727 1.22022 1.00367 0.88849 0.95375 1.60109 1.13839 1.07101 1.47900 1.21702 0.98777 0.93953 0.88914 1.19430 0.95587 0.90036 0.94288 1.20105 0.91188 1.36787 1.01555 0.90810 1.24831 0.97717 0.94526 0.95072 1.69933 1.10480 1.48890 1.24342 0.87079 0.79764 0.78145 0.85519 1.20669 1.22257 1.17906 1.22736 0.91192 1.03386 1.04948 1.23071 1.03417 1.01850 0.95338 0.93279 0.92415 0.92863 0.91100 0.92851 0.93104 0.92912 0.92141 0.92063 0.93232 0.94455 0.90165 0.91735 0.96488 0.85086 0.91674 0.98140 0.92914 0.89837 0.91550 0.91723 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.64 37.16 0.32 -1.14 16 2 C -0.10 -1.09 2.67 -90.62 -0.24 -1.33 16 3 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 4 C -0.11 -1.29 4.24 -26.73 -0.11 -1.40 16 5 C -0.09 -1.21 2.41 -90.62 -0.22 -1.42 16 6 H 0.07 0.87 6.56 -51.93 -0.34 0.53 16 7 C -0.14 -2.17 9.00 37.16 0.33 -1.83 16 8 C 0.06 1.03 4.71 -3.82 -0.02 1.01 16 9 N -0.66 -12.67 5.32 -113.78 -0.61 -13.27 16 10 C 0.10 2.03 5.17 -3.83 -0.02 2.01 16 11 C 0.01 0.18 1.00 -155.66 -0.16 0.03 16 12 C -0.46 -12.81 9.29 -34.44 -0.32 -13.13 16 13 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 14 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 15 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 16 Si 0.87 21.76 25.35 -169.99 -4.31 17.45 16 17 H -0.28 -6.92 6.59 56.52 0.37 -6.55 16 18 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 19 H -0.25 -6.07 5.89 56.52 0.33 -5.74 16 20 C -0.19 -3.77 9.96 -26.69 -0.27 -4.03 16 21 C -0.20 -4.25 7.92 -26.69 -0.21 -4.47 16 22 H 0.05 0.45 8.13 -51.93 -0.42 0.02 16 23 H 0.06 0.61 6.85 -51.93 -0.36 0.26 16 24 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 25 H 0.07 0.83 6.55 -51.93 -0.34 0.49 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.49 7.39 -51.93 -0.38 1.11 16 34 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 35 H 0.02 0.26 6.75 -51.93 -0.35 -0.09 16 36 H 0.33 5.90 8.85 -39.29 -0.35 5.55 16 37 H 0.07 1.52 5.08 -51.93 -0.26 1.25 16 38 H 0.00 0.01 8.09 -51.93 -0.42 -0.41 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -29.19 330.25 -8.20 -37.39 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.37 Total: 4.84 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -0.66 Total: -24.54 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.17 Total: -40.12 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.31 Total: 17.45 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.19 -8.20 -37.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336763000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.389 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds