Wall clock time and date at job start Mon Mar 30 2020 17:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47126 * 2 1 4 4 C 1.52997 * 109.47141 * 240.00516 * 2 1 3 5 5 C 1.53006 * 109.47141 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46995 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47124 * 59.99977 * 6 5 4 8 8 C 1.52996 * 109.47191 * 299.99774 * 7 6 5 9 9 C 1.52997 * 109.47601 * 60.00002 * 4 2 1 10 10 N 1.46896 * 109.47153 * 120.00067 * 2 1 3 11 11 C 1.46907 * 110.99805 * 58.95364 * 10 2 1 12 12 C 1.46899 * 111.00152 * 295.00303 * 10 2 1 13 13 C 1.52997 * 109.47254 * 189.99788 * 12 10 2 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46838 * 89.99826 * 18 16 14 20 20 H 1.48497 * 109.47419 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.47011 * 330.00539 * 18 16 14 22 22 H 1.08993 * 109.46700 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47021 * 299.99948 * 1 2 3 24 24 H 1.09006 * 109.46785 * 59.99479 * 1 2 3 25 25 H 1.09004 * 109.47108 * 300.00083 * 4 2 1 26 26 H 1.08994 * 109.47221 * 300.00086 * 5 4 2 27 27 H 1.09006 * 109.46785 * 60.00005 * 5 4 2 28 28 H 1.09003 * 109.47046 * 299.99880 * 6 5 4 29 29 H 1.08997 * 109.46925 * 179.97438 * 6 5 4 30 30 H 1.09002 * 109.47016 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.46757 * 59.99803 * 7 6 5 32 32 H 1.08993 * 109.47264 * 300.00199 * 8 7 6 33 33 H 1.09006 * 109.46773 * 179.97438 * 8 7 6 34 34 H 1.09007 * 109.46909 * 300.00259 * 9 4 2 35 35 H 1.09004 * 109.46824 * 59.99907 * 9 4 2 36 36 H 1.08995 * 109.47407 * 296.04618 * 11 10 2 37 37 H 1.09006 * 109.46770 * 56.04664 * 11 10 2 38 38 H 1.09003 * 109.46848 * 176.04346 * 11 10 2 39 39 H 1.09002 * 109.47043 * 309.99859 * 12 10 2 40 40 H 1.09001 * 109.47354 * 69.99921 * 12 10 2 41 41 H 1.09002 * 109.47153 * 300.00004 * 13 12 10 42 42 H 1.08998 * 109.47533 * 59.99633 * 13 12 10 43 43 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5701 -0.7206 -1.2496 6 6 4.0801 -1.4423 -2.4986 7 6 3.5695 -0.7218 -3.7481 8 6 2.0396 -0.7224 -3.7478 9 6 1.5301 0.0001 -2.4985 10 7 2.0197 -0.6925 1.1994 11 6 1.5283 -2.0762 1.2459 12 6 1.6487 0.0391 2.4180 13 6 2.3788 -0.5663 3.6185 14 6 1.9988 0.1845 4.8686 15 1 1.3054 1.0107 4.8126 16 6 2.5353 -0.1838 6.0841 17 7 3.3793 -1.1902 6.1525 18 14 2.0647 0.7474 7.6336 19 1 0.8712 0.1131 8.2490 20 1 3.1956 0.7116 8.5954 21 1 1.7530 2.1576 7.2882 22 1 -0.3632 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 1.6767 -1.7488 -1.2494 26 1 3.9331 0.3072 -1.2497 27 1 3.9338 -1.2342 -0.3596 28 1 3.7171 -2.4701 -2.4980 29 1 5.1700 -1.4415 -2.4990 30 1 3.9332 -1.2357 -4.6379 31 1 3.9325 0.3060 -3.7486 32 1 1.6766 -1.7501 -3.7471 33 1 1.6759 -0.2087 -4.6378 34 1 0.4401 0.0002 -2.4985 35 1 1.8935 1.0278 -2.4984 36 1 0.4420 -2.0732 1.3346 37 1 1.8168 -2.5950 0.3316 38 1 1.9618 -2.5869 2.1057 39 1 1.9297 1.0869 2.3125 40 1 0.5722 -0.0346 2.5726 41 1 2.0978 -1.6142 3.7241 42 1 3.4553 -0.4927 3.4641 43 1 3.7565 -1.4496 7.0077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338345056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:02 Heat of formation + Delta-G solvation = -33.154523 kcal Electronic energy + Delta-G solvation = -17982.641748 eV Core-core repulsion = 15447.241807 eV Total energy + Delta-G solvation = -2535.399941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.38041 -36.86861 -33.36631 -31.88554 -30.69388 -29.21109 -28.41921 -25.93706 -24.42728 -22.69918 -22.28010 -20.35957 -19.62154 -18.96171 -16.47076 -15.58942 -15.18461 -14.57556 -14.43757 -14.07462 -14.00142 -13.66496 -13.42864 -13.17587 -12.46405 -12.30124 -12.02986 -11.84274 -11.70339 -11.46382 -11.25024 -11.05918 -11.00195 -10.95205 -10.87067 -10.65407 -10.50110 -10.10973 -9.92278 -9.86969 -9.72855 -9.25246 -9.06553 -8.29257 -7.55305 -5.96168 -3.98176 3.33812 3.40014 3.43427 4.41470 4.57698 4.69724 4.82593 4.92672 5.14722 5.34482 5.38158 5.39781 5.53051 5.54298 5.57346 5.61646 5.68371 5.74023 5.84703 5.88003 5.99479 6.03682 6.08764 6.12647 6.20218 6.21955 6.26611 6.32312 6.39291 6.43557 6.60419 6.61869 6.68416 6.73441 7.05419 7.60555 7.67639 7.87210 7.97097 8.14189 8.48633 9.09395 9.65182 11.15240 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.044688 B = 0.004642 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.422562 B = 6031.034592 C = 6311.267608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.083 3.917 3 H 0.075 0.925 4 C -0.076 4.076 5 C -0.106 4.106 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.116 4.116 10 N -0.532 5.532 11 C 0.022 3.978 12 C 0.063 3.937 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.016 0.984 42 H 0.023 0.977 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 0.152 -18.501 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.026 4.026 3 H 0.093 0.907 4 C -0.095 4.095 5 C -0.144 4.144 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.155 4.155 9 C -0.154 4.154 10 N -0.254 5.254 11 C -0.127 4.127 12 C -0.064 4.064 13 C -0.009 4.009 14 C -0.560 4.560 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.042 0.958 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.038 0.043 -18.388 18.501 hybrid contribution -1.190 0.504 1.008 1.639 sum -3.228 0.547 -17.380 17.686 Atomic orbital electron populations 1.22517 0.98437 1.01890 1.01768 1.21739 0.91999 0.98193 0.90693 0.90658 1.21188 0.96071 0.99305 0.92957 1.21461 0.94576 1.00685 0.97656 1.21569 0.99948 0.99318 0.94968 1.21540 0.95660 1.00656 0.97800 1.21517 0.95806 1.00528 0.97609 1.21656 1.00109 0.99398 0.94218 1.62304 1.58806 1.02175 1.02161 1.22427 0.97372 0.90837 1.02034 1.22327 0.97361 0.97153 0.89568 1.19085 0.96135 0.95889 0.89809 1.21211 1.26429 1.15927 0.92389 0.92909 1.24986 0.95116 0.95198 0.98994 1.69978 1.30558 1.27488 1.25266 0.86617 0.77992 0.80315 0.83199 1.20757 1.21212 1.19914 0.92626 0.92429 0.92576 0.91385 0.92490 0.90270 0.92423 0.92388 0.92706 0.92223 0.92295 0.92560 0.92082 0.92128 0.96215 0.92431 0.90735 0.92452 0.96166 0.96540 0.95827 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 8.15 37.16 0.30 -2.26 16 2 C 0.08 1.22 1.93 -67.71 -0.13 1.09 16 3 H 0.08 1.15 8.03 -51.93 -0.42 0.74 16 4 C -0.08 -0.96 1.44 -90.62 -0.13 -1.09 16 5 C -0.11 -1.37 5.05 -26.73 -0.13 -1.50 16 6 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 7 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 8 C -0.12 -1.11 5.93 -26.71 -0.16 -1.27 16 9 C -0.12 -1.23 4.85 -26.71 -0.13 -1.36 16 10 N -0.53 -9.60 3.99 -234.88 -0.94 -10.54 16 11 C 0.02 0.37 8.51 60.07 0.51 0.88 16 12 C 0.06 1.34 4.34 -3.83 -0.02 1.33 16 13 C 0.03 0.74 4.90 -27.89 -0.14 0.61 16 14 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.05 0.76 6.48 -51.93 -0.34 0.42 16 23 H 0.06 0.87 6.75 -51.93 -0.35 0.51 16 24 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 25 H 0.07 0.88 6.34 -51.93 -0.33 0.55 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.20 7.60 -51.93 -0.39 0.80 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.02 0.32 6.51 -51.93 -0.34 -0.01 16 37 H 0.06 0.85 6.13 -51.93 -0.32 0.53 16 38 H 0.07 1.43 6.47 -51.93 -0.34 1.09 16 39 H 0.06 1.23 8.00 -51.93 -0.42 0.81 16 40 H 0.02 0.43 6.94 -51.93 -0.36 0.07 16 41 H 0.02 0.46 6.55 -51.93 -0.34 0.11 16 42 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -29.37 317.62 -9.13 -38.50 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -7.95 Total: -3.16 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -0.75 Total: -20.02 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.20 Total: -36.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.37 -9.13 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338345056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.346 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds