Wall clock time and date at job start Mon Mar 30 2020 17:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47126 * 2 1 4 4 C 1.52997 * 109.47141 * 240.00516 * 2 1 3 5 5 C 1.53006 * 109.47141 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46995 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47124 * 59.99977 * 6 5 4 8 8 C 1.52996 * 109.47191 * 299.99774 * 7 6 5 9 9 C 1.52997 * 109.47601 * 60.00002 * 4 2 1 10 10 N 1.46896 * 109.47153 * 120.00067 * 2 1 3 11 11 C 1.46907 * 110.99805 * 58.95364 * 10 2 1 12 12 C 1.46899 * 111.00152 * 295.00303 * 10 2 1 13 13 C 1.52997 * 109.47254 * 189.99788 * 12 10 2 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46838 * 89.99826 * 18 16 14 20 20 H 1.48497 * 109.47419 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.47011 * 330.00539 * 18 16 14 22 22 H 1.08993 * 109.46700 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47021 * 299.99948 * 1 2 3 24 24 H 1.09006 * 109.46785 * 59.99479 * 1 2 3 25 25 H 1.09004 * 109.47108 * 300.00083 * 4 2 1 26 26 H 1.08994 * 109.47221 * 300.00086 * 5 4 2 27 27 H 1.09006 * 109.46785 * 60.00005 * 5 4 2 28 28 H 1.09003 * 109.47046 * 299.99880 * 6 5 4 29 29 H 1.08997 * 109.46925 * 179.97438 * 6 5 4 30 30 H 1.09002 * 109.47016 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.46757 * 59.99803 * 7 6 5 32 32 H 1.08993 * 109.47264 * 300.00199 * 8 7 6 33 33 H 1.09006 * 109.46773 * 179.97438 * 8 7 6 34 34 H 1.09007 * 109.46909 * 300.00259 * 9 4 2 35 35 H 1.09004 * 109.46824 * 59.99907 * 9 4 2 36 36 H 1.08995 * 109.47407 * 296.04618 * 11 10 2 37 37 H 1.09006 * 109.46770 * 56.04664 * 11 10 2 38 38 H 1.09003 * 109.46848 * 176.04346 * 11 10 2 39 39 H 1.09002 * 109.47043 * 309.99859 * 12 10 2 40 40 H 1.09001 * 109.47354 * 69.99921 * 12 10 2 41 41 H 1.09002 * 109.47153 * 300.00004 * 13 12 10 42 42 H 1.08998 * 109.47533 * 59.99633 * 13 12 10 43 43 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5701 -0.7206 -1.2496 6 6 4.0801 -1.4423 -2.4986 7 6 3.5695 -0.7218 -3.7481 8 6 2.0396 -0.7224 -3.7478 9 6 1.5301 0.0001 -2.4985 10 7 2.0197 -0.6925 1.1994 11 6 1.5283 -2.0762 1.2459 12 6 1.6487 0.0391 2.4180 13 6 2.3788 -0.5663 3.6185 14 6 1.9988 0.1845 4.8686 15 1 1.3054 1.0107 4.8126 16 6 2.5353 -0.1838 6.0841 17 7 3.3793 -1.1902 6.1525 18 14 2.0647 0.7474 7.6336 19 1 0.8712 0.1131 8.2490 20 1 3.1956 0.7116 8.5954 21 1 1.7530 2.1576 7.2882 22 1 -0.3632 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 1.6767 -1.7488 -1.2494 26 1 3.9331 0.3072 -1.2497 27 1 3.9338 -1.2342 -0.3596 28 1 3.7171 -2.4701 -2.4980 29 1 5.1700 -1.4415 -2.4990 30 1 3.9332 -1.2357 -4.6379 31 1 3.9325 0.3060 -3.7486 32 1 1.6766 -1.7501 -3.7471 33 1 1.6759 -0.2087 -4.6378 34 1 0.4401 0.0002 -2.4985 35 1 1.8935 1.0278 -2.4984 36 1 0.4420 -2.0732 1.3346 37 1 1.8168 -2.5950 0.3316 38 1 1.9618 -2.5869 2.1057 39 1 1.9297 1.0869 2.3125 40 1 0.5722 -0.0346 2.5726 41 1 2.0978 -1.6142 3.7241 42 1 3.4553 -0.4927 3.4641 43 1 3.7565 -1.4496 7.0077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338345056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:02 Heat of formation + Delta-G solvation = -49.122205 kcal Electronic energy + Delta-G solvation = -17983.334158 eV Core-core repulsion = 15447.241807 eV Total energy + Delta-G solvation = -2536.092351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51835 -38.09934 -35.35169 -33.38807 -31.64721 -30.88482 -29.56360 -27.58811 -26.06442 -24.08238 -23.17734 -21.91374 -20.65455 -20.23984 -18.58967 -16.73724 -16.67237 -16.27279 -16.01695 -15.15699 -15.08223 -14.83327 -14.59262 -14.39426 -14.21440 -13.73772 -13.29163 -13.17713 -13.02848 -12.80126 -12.78221 -12.62350 -12.44735 -12.19863 -12.17383 -11.89768 -11.71378 -11.56892 -11.38533 -11.27810 -11.12512 -10.77756 -10.69576 -10.52706 -9.02236 -8.19642 -6.30981 1.39455 1.41212 1.52376 2.40327 3.13533 3.15470 3.71862 3.94785 4.00480 4.17600 4.29495 4.35204 4.43952 4.48390 4.50504 4.59148 4.69163 4.71633 4.73900 4.75694 4.81067 4.84243 4.93138 4.99805 5.05020 5.14885 5.19565 5.23485 5.29239 5.34729 5.37634 5.40803 5.47342 5.54290 5.64854 5.69075 5.70801 5.81703 6.14091 6.38227 6.42583 6.86521 7.38036 8.92529 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.044688 B = 0.004642 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.422562 B = 6031.034592 C = 6311.267608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.082 3.918 3 H 0.069 0.931 4 C -0.069 4.069 5 C -0.105 4.105 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.115 4.115 9 C -0.112 4.112 10 N -0.542 5.542 11 C 0.028 3.972 12 C 0.081 3.919 13 C 0.037 3.963 14 C -0.545 4.545 15 H 0.058 0.942 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.021 0.979 41 H -0.006 1.006 42 H -0.011 1.011 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 0.926 -19.890 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.027 4.027 3 H 0.087 0.913 4 C -0.087 4.087 5 C -0.143 4.143 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.152 4.152 9 C -0.150 4.150 10 N -0.266 5.266 11 C -0.120 4.120 12 C -0.046 4.046 13 C 0.000 4.000 14 C -0.583 4.583 15 H 0.076 0.924 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.012 0.988 42 H 0.008 0.992 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.206 0.819 -19.800 20.074 hybrid contribution -0.783 0.234 1.405 1.625 sum -3.988 1.053 -18.395 18.852 Atomic orbital electron populations 1.22449 0.97120 1.02150 1.02233 1.21839 0.93056 0.97798 0.89960 0.91259 1.21129 0.95579 0.99220 0.92814 1.21407 0.95065 1.00168 0.97623 1.21539 1.00083 0.99278 0.94619 1.21532 0.95925 1.00582 0.97401 1.21513 0.95479 1.00731 0.97488 1.21628 1.00635 0.99210 0.93490 1.62196 1.59671 1.02606 1.02089 1.22356 0.97482 0.90206 1.01968 1.21929 0.96439 0.96854 0.89405 1.18910 0.94448 0.94840 0.91828 1.21635 1.26745 1.16367 0.93576 0.92368 1.25959 0.94812 0.96050 1.02788 1.70118 1.31608 1.29061 1.26397 0.85440 0.77914 0.79201 0.78435 1.19724 1.20651 1.18742 0.92430 0.94031 0.90023 0.91413 0.93156 0.93172 0.92256 0.92269 0.91282 0.92249 0.92018 0.90942 0.91131 0.92110 0.95534 0.89946 0.93700 0.92605 0.96109 0.98797 0.99227 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.63 8.15 71.98 0.59 -4.05 16 2 C 0.08 2.34 1.93 44.92 0.09 2.43 16 3 H 0.07 2.08 8.03 -2.39 -0.02 2.06 16 4 C -0.07 -1.62 1.44 -10.79 -0.02 -1.63 16 5 C -0.10 -2.66 5.05 30.60 0.15 -2.50 16 6 C -0.12 -2.39 5.92 30.59 0.18 -2.21 16 7 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 8 C -0.11 -1.81 5.93 30.61 0.18 -1.63 16 9 C -0.11 -2.06 4.85 30.61 0.15 -1.91 16 10 N -0.54 -19.92 3.99 -897.03 -3.58 -23.49 16 11 C 0.03 0.96 8.51 127.69 1.09 2.05 16 12 C 0.08 3.57 4.34 86.30 0.37 3.95 16 13 C 0.04 2.05 4.90 29.85 0.15 2.20 16 14 C -0.54 -31.93 9.11 25.60 0.23 -31.69 16 15 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 16 C 0.00 0.11 5.46 84.65 0.46 0.57 16 17 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 18 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H 0.06 1.45 6.48 -2.39 -0.02 1.44 16 23 H 0.04 1.19 6.75 -2.39 -0.02 1.18 16 24 H 0.08 1.67 6.43 -2.38 -0.02 1.66 16 25 H 0.07 1.62 6.34 -2.39 -0.02 1.60 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.55 7.60 -2.38 -0.02 1.53 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.07 1.19 6.43 -2.38 -0.02 1.17 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.03 0.87 6.51 -2.39 -0.02 0.85 16 37 H 0.08 2.40 6.13 -2.38 -0.01 2.38 16 38 H 0.04 1.80 6.47 -2.39 -0.02 1.78 16 39 H 0.06 2.44 8.00 -2.39 -0.02 2.42 16 40 H 0.02 0.90 6.94 -2.39 -0.02 0.89 16 41 H -0.01 -0.37 6.55 -2.39 -0.02 -0.39 16 42 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -64.13 317.62 3.48 -60.64 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.94 Total: 9.71 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 3.81 Total: -36.20 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -3.29 Total: -81.21 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.13 3.48 -60.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338345056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.520 kcal (2) G-P(sol) polarization free energy of solvation -64.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds