Wall clock time and date at job start Mon Mar 30 2020 17:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.53138 * 2 1 4 4 C 1.53037 * 109.50648 * 120.10120 * 2 1 3 5 5 N 1.46848 * 109.52293 * 179.12098 * 4 2 1 6 6 C 1.46894 * 110.99689 * 174.16222 * 5 4 2 7 7 C 1.52997 * 109.47515 * 66.04595 * 6 5 4 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99923 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00006 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.46794 * 89.99626 * 13 11 9 15 15 H 1.48502 * 109.47140 * 209.99610 * 13 11 9 16 16 H 1.48501 * 109.46982 * 329.99723 * 13 11 9 17 17 C 1.46847 * 111.19674 * 298.25888 * 5 4 2 18 18 C 1.53031 * 109.52676 * 61.74351 * 17 5 4 19 19 C 1.52995 * 109.50655 * 180.87787 * 18 17 5 20 20 C 1.53001 * 109.53844 * 60.77828 * 18 17 5 21 21 C 1.53120 * 109.50319 * 239.90497 * 2 1 3 22 22 H 1.08996 * 109.47395 * 299.89633 * 1 2 3 23 23 H 1.09003 * 109.47725 * 59.89930 * 1 2 3 24 24 H 1.09010 * 109.46853 * 179.89867 * 1 2 3 25 25 H 1.08997 * 109.45980 * 59.10721 * 4 2 1 26 26 H 1.08997 * 109.45664 * 299.13805 * 4 2 1 27 27 H 1.09002 * 109.47104 * 306.04327 * 6 5 4 28 28 H 1.08998 * 109.46828 * 186.05159 * 6 5 4 29 29 H 1.09002 * 109.47153 * 59.99762 * 7 6 5 30 30 H 1.09001 * 109.46832 * 299.99953 * 7 6 5 31 31 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 32 32 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 33 33 H 0.97000 * 119.99684 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.45819 * 181.76026 * 17 5 4 35 35 H 1.09001 * 109.46448 * 301.72592 * 17 5 4 36 36 H 1.08998 * 109.47903 * 179.79874 * 19 18 17 37 37 H 1.08993 * 109.47271 * 299.80549 * 19 18 17 38 38 H 1.09011 * 109.47263 * 59.79993 * 19 18 17 39 39 H 1.09003 * 109.47056 * 300.17779 * 20 18 17 40 40 H 1.09002 * 109.46866 * 60.17541 * 20 18 17 41 41 H 1.09000 * 109.47278 * 180.18026 * 20 18 17 42 42 H 1.09005 * 109.52294 * 302.31058 * 21 2 1 43 43 H 1.09001 * 109.52138 * 62.49331 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 3.5093 -0.7421 1.2378 6 6 4.0373 -1.3059 2.4872 7 6 3.6552 -2.7844 2.5812 8 6 4.2046 -3.3714 3.8829 9 6 3.8277 -4.8276 3.9757 10 1 3.2541 -5.2883 3.1851 11 6 4.2161 -5.5718 5.0695 12 7 3.8867 -6.8425 5.1507 13 14 5.2089 -4.7750 6.4366 14 1 4.2862 -4.2156 7.4568 15 1 6.0871 -5.7925 7.0682 16 1 6.0425 -3.6837 5.8715 17 6 4.0230 -1.4729 0.0722 18 6 3.5712 -0.7718 -1.2109 19 6 4.0882 -1.5458 -2.4251 20 6 4.1278 0.6531 -1.2386 21 6 2.0412 -0.7237 -1.2488 22 1 -0.3634 0.5122 0.8909 23 1 -0.3635 0.5154 -0.8891 24 1 -0.3633 -1.0278 -0.0018 25 1 1.6649 -1.7465 1.2542 26 1 1.6906 -0.2023 2.1388 27 1 3.6157 -0.7670 3.3357 28 1 5.1230 -1.2097 2.4990 29 1 4.0768 -3.3233 1.7327 30 1 2.5695 -2.8805 2.5695 31 1 5.2903 -3.2753 3.8951 32 1 3.7827 -2.8325 4.7311 33 1 4.1603 -7.3661 5.9200 34 1 5.1121 -1.4961 0.1092 35 1 3.6375 -2.4924 0.0840 36 1 3.7631 -1.0481 -3.3387 37 1 5.1772 -1.5798 -2.3976 38 1 3.6924 -2.5613 -2.4042 39 1 3.7602 1.2037 -0.3726 40 1 5.2169 0.6182 -1.2115 41 1 3.8027 1.1525 -2.1513 42 1 1.6452 -1.7391 -1.2691 43 1 1.7155 -0.1870 -2.1398 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344081817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:09 Heat of formation + Delta-G solvation = -33.335585 kcal Electronic energy + Delta-G solvation = -18081.579101 eV Core-core repulsion = 15546.171309 eV Total energy + Delta-G solvation = -2535.407792 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85159 -35.80499 -33.98383 -33.11891 -31.10532 -27.36213 -27.07500 -26.53675 -26.50046 -24.15978 -21.29246 -20.65167 -20.08664 -18.20042 -16.70948 -15.42458 -15.26359 -14.92911 -14.42281 -14.17742 -13.99153 -13.75394 -13.23845 -12.90424 -12.69165 -12.43617 -12.15038 -12.12209 -11.89879 -11.73985 -11.56918 -11.34796 -11.18770 -11.10685 -10.73842 -10.61986 -10.42521 -10.13647 -10.05613 -9.87514 -9.75691 -9.63708 -9.21086 -8.52960 -7.82951 -6.03573 -4.01415 3.31236 3.38470 3.42671 4.18371 4.46038 4.64696 4.79797 4.88856 5.02282 5.29680 5.31089 5.39116 5.52204 5.57943 5.59876 5.62622 5.70676 5.72347 5.75172 5.79468 5.88811 5.93893 5.98512 6.02088 6.08687 6.12902 6.16878 6.19961 6.25875 6.33224 6.40312 6.52243 6.57929 6.65505 6.89561 7.30184 7.35277 7.42837 7.47909 7.80835 8.55396 9.01126 9.59229 11.10074 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.031748 B = 0.005192 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.727030 B = 5391.346316 C = 5568.145954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.077 0.923 4 C 0.057 3.943 5 N -0.536 5.536 6 C 0.051 3.949 7 C -0.137 4.137 8 C -0.010 4.010 9 C -0.520 4.520 10 H 0.069 0.931 11 C 0.065 3.935 12 N -0.905 5.905 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.265 1.265 17 C 0.063 3.937 18 C -0.063 4.063 19 C -0.141 4.141 20 C -0.131 4.131 21 C -0.104 4.104 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.015 0.985 32 H 0.010 0.990 33 H 0.262 0.738 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 15.360 -12.892 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.071 4.071 5 N -0.258 5.258 6 C -0.077 4.077 7 C -0.176 4.176 8 C -0.048 4.048 9 C -0.558 4.558 10 H 0.087 0.913 11 C -0.136 4.136 12 N -0.544 5.544 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.190 1.190 17 C -0.065 4.065 18 C -0.064 4.064 19 C -0.199 4.199 20 C -0.188 4.188 21 C -0.141 4.141 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.270 15.697 -12.811 20.388 hybrid contribution 0.212 -0.742 0.916 1.198 sum -2.058 14.955 -11.894 19.219 Atomic orbital electron populations 1.21798 0.95350 1.01828 1.01440 1.21205 0.94728 1.00299 0.94649 0.90439 1.22132 0.88092 0.99266 0.97647 1.62193 1.07577 1.53461 1.02612 1.22334 0.99974 0.94628 0.90726 1.22060 1.00587 0.94562 1.00357 1.19498 0.95957 0.96658 0.92730 1.21163 1.34858 0.93210 1.06527 0.91316 1.25050 0.95683 0.94707 0.98142 1.69923 1.46908 1.07192 1.30426 0.86757 0.80664 0.79385 0.82365 1.20311 1.21410 1.18979 1.22125 0.99731 0.95331 0.89341 1.20587 0.95120 0.96190 0.94473 1.21839 1.01020 0.99965 0.97068 1.21773 1.00258 0.95427 1.01351 1.21700 0.94611 1.00394 0.97429 0.92671 0.92819 0.92736 0.94281 0.91169 0.91265 0.91192 0.92709 0.92909 0.96684 0.97152 0.92786 0.91102 0.94108 0.92769 0.92613 0.92721 0.91213 0.93263 0.93856 0.92251 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.20 37.16 0.34 -1.11 16 2 C -0.09 -1.01 2.53 -90.54 -0.23 -1.24 16 3 H 0.08 0.87 6.58 -51.93 -0.34 0.53 16 4 C 0.06 0.78 4.33 -3.83 -0.02 0.76 16 5 N -0.54 -7.79 4.14 -234.68 -0.97 -8.77 16 6 C 0.05 0.84 5.36 -3.83 -0.02 0.82 16 7 C -0.14 -2.75 4.45 -26.73 -0.12 -2.87 16 8 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 9 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 10 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 11 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 12 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16 13 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 17 C 0.06 0.87 3.55 -3.84 -0.01 0.86 16 18 C -0.06 -0.72 0.77 -154.43 -0.12 -0.84 16 19 C -0.14 -1.45 8.48 37.15 0.32 -1.14 16 20 C -0.13 -1.41 8.04 37.16 0.30 -1.11 16 21 C -0.10 -1.14 4.07 -26.61 -0.11 -1.25 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 26 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 27 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.13 6.51 -51.93 -0.34 0.79 16 30 H 0.05 1.09 6.68 -51.93 -0.35 0.74 16 31 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 32 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 35 H 0.04 0.64 6.61 -51.93 -0.34 0.29 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.07 0.82 6.01 -51.93 -0.31 0.50 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -30.15 320.31 -8.55 -38.70 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -8.30 Total: -3.40 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -0.21 Total: -21.14 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.20 Total: -36.40 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.15 -8.55 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344081817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.361 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds