Wall clock time and date at job start Mon Mar 30 2020 17:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.53138 * 2 1 4 4 C 1.53037 * 109.50648 * 120.10120 * 2 1 3 5 5 N 1.46848 * 109.52293 * 179.12098 * 4 2 1 6 6 C 1.46894 * 110.99689 * 174.16222 * 5 4 2 7 7 C 1.52997 * 109.47515 * 66.04595 * 6 5 4 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99923 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00006 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.46794 * 89.99626 * 13 11 9 15 15 H 1.48502 * 109.47140 * 209.99610 * 13 11 9 16 16 H 1.48501 * 109.46982 * 329.99723 * 13 11 9 17 17 C 1.46847 * 111.19674 * 298.25888 * 5 4 2 18 18 C 1.53031 * 109.52676 * 61.74351 * 17 5 4 19 19 C 1.52995 * 109.50655 * 180.87787 * 18 17 5 20 20 C 1.53001 * 109.53844 * 60.77828 * 18 17 5 21 21 C 1.53120 * 109.50319 * 239.90497 * 2 1 3 22 22 H 1.08996 * 109.47395 * 299.89633 * 1 2 3 23 23 H 1.09003 * 109.47725 * 59.89930 * 1 2 3 24 24 H 1.09010 * 109.46853 * 179.89867 * 1 2 3 25 25 H 1.08997 * 109.45980 * 59.10721 * 4 2 1 26 26 H 1.08997 * 109.45664 * 299.13805 * 4 2 1 27 27 H 1.09002 * 109.47104 * 306.04327 * 6 5 4 28 28 H 1.08998 * 109.46828 * 186.05159 * 6 5 4 29 29 H 1.09002 * 109.47153 * 59.99762 * 7 6 5 30 30 H 1.09001 * 109.46832 * 299.99953 * 7 6 5 31 31 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 32 32 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 33 33 H 0.97000 * 119.99684 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.45819 * 181.76026 * 17 5 4 35 35 H 1.09001 * 109.46448 * 301.72592 * 17 5 4 36 36 H 1.08998 * 109.47903 * 179.79874 * 19 18 17 37 37 H 1.08993 * 109.47271 * 299.80549 * 19 18 17 38 38 H 1.09011 * 109.47263 * 59.79993 * 19 18 17 39 39 H 1.09003 * 109.47056 * 300.17779 * 20 18 17 40 40 H 1.09002 * 109.46866 * 60.17541 * 20 18 17 41 41 H 1.09000 * 109.47278 * 180.18026 * 20 18 17 42 42 H 1.09005 * 109.52294 * 302.31058 * 21 2 1 43 43 H 1.09001 * 109.52138 * 62.49331 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 3.5093 -0.7421 1.2378 6 6 4.0373 -1.3059 2.4872 7 6 3.6552 -2.7844 2.5812 8 6 4.2046 -3.3714 3.8829 9 6 3.8277 -4.8276 3.9757 10 1 3.2541 -5.2883 3.1851 11 6 4.2161 -5.5718 5.0695 12 7 3.8867 -6.8425 5.1507 13 14 5.2089 -4.7750 6.4366 14 1 4.2862 -4.2156 7.4568 15 1 6.0871 -5.7925 7.0682 16 1 6.0425 -3.6837 5.8715 17 6 4.0230 -1.4729 0.0722 18 6 3.5712 -0.7718 -1.2109 19 6 4.0882 -1.5458 -2.4251 20 6 4.1278 0.6531 -1.2386 21 6 2.0412 -0.7237 -1.2488 22 1 -0.3634 0.5122 0.8909 23 1 -0.3635 0.5154 -0.8891 24 1 -0.3633 -1.0278 -0.0018 25 1 1.6649 -1.7465 1.2542 26 1 1.6906 -0.2023 2.1388 27 1 3.6157 -0.7670 3.3357 28 1 5.1230 -1.2097 2.4990 29 1 4.0768 -3.3233 1.7327 30 1 2.5695 -2.8805 2.5695 31 1 5.2903 -3.2753 3.8951 32 1 3.7827 -2.8325 4.7311 33 1 4.1603 -7.3661 5.9200 34 1 5.1121 -1.4961 0.1092 35 1 3.6375 -2.4924 0.0840 36 1 3.7631 -1.0481 -3.3387 37 1 5.1772 -1.5798 -2.3976 38 1 3.6924 -2.5613 -2.4042 39 1 3.7602 1.2037 -0.3726 40 1 5.2169 0.6182 -1.2115 41 1 3.8027 1.1525 -2.1513 42 1 1.6452 -1.7391 -1.2691 43 1 1.7155 -0.1870 -2.1398 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344081817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:09 Heat of formation + Delta-G solvation = -50.806862 kcal Electronic energy + Delta-G solvation = -18082.336713 eV Core-core repulsion = 15546.171309 eV Total energy + Delta-G solvation = -2536.165403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91730 -37.15033 -35.23187 -34.78768 -32.97259 -28.86735 -28.06038 -27.55002 -27.45014 -25.73465 -22.96534 -21.82999 -21.39638 -19.24744 -18.91924 -16.66102 -16.47475 -16.20046 -15.93370 -15.51385 -15.29330 -15.00998 -14.72569 -14.28242 -13.99969 -13.66146 -13.36641 -13.30055 -12.98811 -12.84762 -12.76377 -12.65820 -12.51326 -12.29578 -12.10676 -11.87064 -11.80519 -11.65431 -11.42299 -11.31503 -11.29213 -11.01533 -10.96790 -10.79362 -9.13441 -8.32971 -6.38010 1.34002 1.36238 1.48790 2.33945 3.01616 3.02325 3.71030 3.85455 3.93921 4.04434 4.19189 4.25894 4.35864 4.45062 4.53763 4.62383 4.64593 4.69524 4.74953 4.81964 4.86878 4.88224 4.92879 4.98686 5.03556 5.06170 5.06805 5.12249 5.21075 5.22815 5.29426 5.37764 5.44099 5.46113 5.51178 5.53552 5.62744 5.70637 6.14046 6.21541 6.26696 6.69622 7.26957 8.84225 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.031748 B = 0.005192 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.727030 B = 5391.346316 C = 5568.145954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 H 0.086 0.914 4 C 0.054 3.946 5 N -0.527 5.527 6 C 0.060 3.940 7 C -0.124 4.124 8 C -0.007 4.007 9 C -0.536 4.536 10 H 0.023 0.977 11 C 0.002 3.998 12 N -0.953 5.953 13 Si 0.956 3.044 14 H -0.265 1.265 15 H -0.283 1.283 16 H -0.244 1.244 17 C 0.062 3.938 18 C -0.061 4.061 19 C -0.139 4.139 20 C -0.125 4.125 21 C -0.103 4.103 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.015 0.985 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.021 0.979 32 H 0.020 0.980 33 H 0.267 0.733 34 H 0.068 0.932 35 H 0.015 0.985 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 18.144 -13.047 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.104 0.896 4 C -0.074 4.074 5 N -0.249 5.249 6 C -0.068 4.068 7 C -0.163 4.163 8 C -0.045 4.045 9 C -0.574 4.574 10 H 0.041 0.959 11 C -0.195 4.195 12 N -0.594 5.594 13 Si 0.779 3.221 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.168 1.168 17 C -0.067 4.067 18 C -0.062 4.062 19 C -0.197 4.197 20 C -0.182 4.182 21 C -0.140 4.140 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.589 18.498 -12.990 22.659 hybrid contribution -0.067 -1.702 0.895 1.924 sum -1.656 16.796 -12.095 20.764 Atomic orbital electron populations 1.21778 0.94220 1.01558 1.02564 1.21177 0.95624 1.00161 0.93286 0.89605 1.22220 0.87445 0.98321 0.99387 1.62275 1.08129 1.52552 1.01920 1.22221 1.00551 0.91774 0.92254 1.21907 0.99428 0.97123 0.97878 1.19447 0.96364 0.93642 0.95027 1.21512 1.34461 0.95944 1.05517 0.95903 1.26101 0.96956 0.95186 1.01223 1.70083 1.48521 1.09110 1.31701 0.85574 0.79176 0.78868 0.78529 1.18961 1.20830 1.16758 1.22181 0.99520 0.94379 0.90578 1.20594 0.95502 0.96719 0.93340 1.21825 1.01126 0.99464 0.97267 1.21713 1.00167 0.94466 1.01867 1.21706 0.94231 0.99902 0.98183 0.92219 0.91046 0.93716 0.96690 0.90858 0.90342 0.90482 0.94011 0.94220 0.96035 0.96162 0.92438 0.91313 0.96666 0.90970 0.92400 0.93706 0.91995 0.93302 0.92103 0.93641 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.20 71.98 0.66 -1.93 16 2 C -0.08 -1.75 2.53 -10.74 -0.03 -1.77 16 3 H 0.09 1.70 6.58 -2.39 -0.02 1.68 16 4 C 0.05 1.45 4.33 86.33 0.37 1.83 16 5 N -0.53 -14.85 4.14 -896.40 -3.71 -18.57 16 6 C 0.06 1.93 5.36 86.30 0.46 2.39 16 7 C -0.12 -5.08 4.45 30.59 0.14 -4.94 16 8 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 9 C -0.54 -32.25 9.66 25.60 0.25 -32.00 16 10 H 0.02 1.52 7.99 -2.91 -0.02 1.50 16 11 C 0.00 0.11 5.47 84.65 0.46 0.57 16 12 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 13 Si 0.96 45.08 27.47 68.60 1.88 46.96 16 14 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.24 -10.62 6.54 99.48 0.65 -9.97 16 17 C 0.06 1.70 3.55 86.32 0.31 2.00 16 18 C -0.06 -1.31 0.77 -52.13 -0.04 -1.35 16 19 C -0.14 -2.66 8.48 71.98 0.61 -2.05 16 20 C -0.12 -2.36 8.04 71.98 0.58 -1.78 16 21 C -0.10 -2.10 4.07 30.67 0.12 -1.97 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.01 0.47 6.75 -2.39 -0.02 0.45 16 26 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 27 H 0.08 2.40 8.06 -2.39 -0.02 2.38 16 28 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.04 1.79 6.51 -2.39 -0.02 1.77 16 30 H 0.04 1.70 6.68 -2.39 -0.02 1.68 16 31 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 32 H 0.02 0.93 7.57 -2.39 -0.02 0.92 16 33 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 35 H 0.02 0.49 6.61 -2.39 -0.02 0.48 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.06 1.28 6.01 -2.39 -0.01 1.26 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -66.21 320.31 3.36 -62.85 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.87 Total: 11.08 kcal Atomic # 6 Polarization: -45.23 SS G_CDS: 4.02 Total: -41.21 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.41 Total: -79.69 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -66.21 3.36 -62.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344081817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.043 kcal (2) G-P(sol) polarization free energy of solvation -66.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds