Wall clock time and date at job start Mon Mar 30 2020 17:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.49889 * 2 1 4 4 C 1.53038 * 109.49923 * 239.92447 * 2 1 3 5 5 N 1.46852 * 109.52142 * 180.83895 * 4 2 1 6 6 C 1.46906 * 110.99654 * 185.83900 * 5 4 2 7 7 C 1.52999 * 109.46904 * 66.05060 * 6 5 4 8 8 C 1.53006 * 109.46626 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99963 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47141 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47162 * 120.00342 * 13 11 9 16 16 H 1.48501 * 109.47494 * 240.00320 * 13 11 9 17 17 C 1.46849 * 111.19502 * 61.74349 * 5 4 2 18 18 C 1.53037 * 109.52240 * 298.25513 * 17 5 4 19 19 C 1.52998 * 109.50445 * 299.24012 * 18 17 5 20 20 C 1.53005 * 109.53250 * 179.14336 * 18 17 5 21 21 C 1.53115 * 109.27720 * 59.18424 * 18 17 5 22 22 H 1.08999 * 109.47378 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47148 * 300.07363 * 1 2 3 24 24 H 1.08996 * 109.47826 * 60.07413 * 1 2 3 25 25 H 1.09003 * 109.46091 * 60.82328 * 4 2 1 26 26 H 1.08998 * 109.46587 * 300.85468 * 4 2 1 27 27 H 1.08993 * 109.47034 * 306.04370 * 6 5 4 28 28 H 1.09000 * 109.46693 * 186.04711 * 6 5 4 29 29 H 1.08993 * 109.47839 * 59.99803 * 7 6 5 30 30 H 1.09000 * 109.47160 * 299.99365 * 7 6 5 31 31 H 1.09000 * 109.47050 * 299.99699 * 8 7 6 32 32 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 33 33 H 0.96992 * 120.00038 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.46112 * 58.27737 * 17 5 4 35 35 H 1.08999 * 109.45663 * 178.23965 * 17 5 4 36 36 H 1.08994 * 109.46844 * 179.80346 * 19 18 17 37 37 H 1.09001 * 109.47443 * 299.80682 * 19 18 17 38 38 H 1.08997 * 109.47037 * 59.80628 * 19 18 17 39 39 H 1.09004 * 109.47089 * 300.17443 * 20 18 17 40 40 H 1.08993 * 109.46884 * 60.17630 * 20 18 17 41 41 H 1.09000 * 109.46939 * 180.17752 * 20 18 17 42 42 H 1.09005 * 109.52396 * 182.43914 * 21 18 17 43 43 H 1.09001 * 109.52501 * 62.24990 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7230 -1.2484 5 7 3.5092 -0.7408 -1.2388 6 6 4.0370 -1.3041 -2.4887 7 6 3.6919 -0.3735 -3.6531 8 6 4.2422 -0.9600 -4.9548 9 6 3.9018 -0.0438 -6.1018 10 1 3.3480 0.8656 -5.9206 11 6 4.2973 -0.3663 -7.3826 12 7 4.9713 -1.4740 -7.6034 13 14 3.8748 0.7689 -8.8045 14 1 3.1167 1.9398 -8.2948 15 1 5.1260 1.2348 -9.4546 16 1 3.0463 0.0351 -9.7946 17 6 4.0236 -1.4716 -0.0736 18 6 3.5720 -0.7710 1.2098 19 6 4.1279 0.6541 1.2366 20 6 4.0899 -1.5443 2.4243 21 6 2.0420 -0.7238 1.2484 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5150 0.8894 24 1 -0.3634 0.5126 -0.8906 25 1 1.6897 -0.2018 -2.1390 26 1 1.6652 -1.7462 -1.2548 27 1 3.5918 -2.2837 -2.6621 28 1 5.1196 -1.4052 -2.4129 29 1 4.1370 0.6061 -3.4796 30 1 2.6093 -0.2724 -3.7289 31 1 5.3248 -1.0608 -4.8788 32 1 3.7973 -1.9398 -5.1284 33 1 5.2499 -1.7007 -8.5044 34 1 3.6388 -2.4913 -0.0856 35 1 5.1128 -1.4943 -0.1111 36 1 3.8030 1.1537 2.1492 37 1 5.2170 0.6199 1.2091 38 1 3.7597 1.2041 0.3706 39 1 3.6947 -2.5599 2.4039 40 1 5.1790 -1.5776 2.3962 41 1 3.7650 -1.0462 3.3377 42 1 1.7165 -0.1873 2.1397 43 1 1.6466 -1.7393 1.2686 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344081825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:13 Heat of formation + Delta-G solvation = -37.000769 kcal Electronic energy + Delta-G solvation = -17854.234010 eV Core-core repulsion = 15318.667283 eV Total energy + Delta-G solvation = -2535.566726 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.75649 -35.60538 -33.92168 -33.21681 -31.00625 -27.30182 -26.92897 -26.59769 -26.38790 -23.90259 -21.50916 -20.73248 -19.69731 -18.38900 -16.28660 -15.45908 -15.24483 -14.89090 -14.53707 -14.34164 -14.07615 -13.56502 -13.27971 -12.86654 -12.51669 -12.26754 -12.16416 -11.99982 -11.80110 -11.68618 -11.46665 -11.29288 -11.15172 -10.82441 -10.76956 -10.51903 -10.50308 -10.35170 -10.11264 -10.05983 -9.51729 -9.26679 -8.98746 -8.30806 -7.93670 -5.96110 -3.97840 3.33595 3.40885 3.45549 4.16410 4.50203 4.62148 4.78587 4.84969 5.01945 5.27896 5.38818 5.39822 5.48944 5.55701 5.57663 5.61381 5.71150 5.72553 5.76290 5.82777 5.86145 5.90884 5.93969 6.06181 6.10218 6.11391 6.20552 6.25845 6.34501 6.38253 6.41850 6.60518 6.77778 6.85792 7.19019 7.48076 7.51119 7.73522 7.88789 8.04978 8.48608 9.09741 9.66033 11.15473 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.035970 B = 0.004617 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.233492 B = 6063.342295 C = 6461.123338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.080 0.920 4 C 0.058 3.942 5 N -0.536 5.536 6 C 0.057 3.943 7 C -0.104 4.104 8 C 0.021 3.979 9 C -0.516 4.516 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.066 3.934 18 C -0.063 4.063 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.103 4.103 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.080 0.803 19.350 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.099 0.901 4 C -0.070 4.070 5 N -0.260 5.260 6 C -0.070 4.070 7 C -0.142 4.142 8 C -0.017 4.017 9 C -0.554 4.554 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.062 4.062 18 C -0.063 4.063 19 C -0.190 4.190 20 C -0.198 4.198 21 C -0.140 4.140 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.100 0.900 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.831 1.180 19.239 19.871 hybrid contribution -0.421 -0.420 -0.968 1.136 sum -5.252 0.759 18.271 19.026 Atomic orbital electron populations 1.21792 0.95348 1.01579 1.01650 1.21220 0.94735 1.00627 0.94440 0.90132 1.22176 0.87858 0.98576 0.98356 1.61944 1.07557 1.54104 1.02375 1.22265 0.99419 0.96503 0.88798 1.21644 0.99992 0.98305 0.94221 1.19083 0.96207 0.96053 0.90317 1.21297 1.34975 1.07031 0.92138 0.92649 1.25029 0.95284 0.95285 0.98947 1.69981 1.38775 1.23889 1.21038 0.86553 0.78116 0.80957 0.82487 1.19722 1.21038 1.21079 1.22103 0.99717 0.94373 0.90037 1.20579 0.95165 0.96418 0.94176 1.21779 1.00359 0.95237 1.01588 1.21839 1.00984 0.99710 0.97259 1.21698 0.94551 1.00145 0.97652 0.93003 0.92810 0.92436 0.90038 0.95518 0.95565 0.91353 0.92645 0.93517 0.96640 0.96896 0.93141 0.95534 0.91075 0.93808 0.93169 0.90902 0.93000 0.92614 0.92688 0.92185 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.20 37.16 0.34 -1.14 16 2 C -0.09 -1.07 2.53 -90.54 -0.23 -1.30 16 3 H 0.08 1.00 6.58 -51.93 -0.34 0.66 16 4 C 0.06 0.84 4.58 -3.83 -0.02 0.82 16 5 N -0.54 -8.27 3.94 -234.66 -0.92 -9.19 16 6 C 0.06 1.03 4.96 -3.82 -0.02 1.01 16 7 C -0.10 -2.21 5.09 -26.73 -0.14 -2.35 16 8 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 9 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 10 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 13 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 17 C 0.07 0.87 4.18 -3.83 -0.02 0.86 16 18 C -0.06 -0.70 0.77 -154.43 -0.12 -0.82 16 19 C -0.13 -1.49 8.03 37.16 0.30 -1.19 16 20 C -0.14 -1.31 8.48 37.16 0.32 -0.99 16 21 C -0.10 -1.10 4.08 -26.61 -0.11 -1.21 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.27 6.22 -51.93 -0.32 0.95 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.07 1.23 7.98 -51.93 -0.41 0.82 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.98 6.44 -51.93 -0.33 0.65 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.94 8.01 -51.93 -0.42 0.53 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.94 6.01 -51.93 -0.31 0.63 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -29.74 327.07 -8.96 -38.70 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -8.45 Total: -5.11 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -0.24 Total: -19.62 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.19 Total: -35.88 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.74 -8.96 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344081825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.703 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds