Wall clock time and date at job start Mon Mar 30 2020 17:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47070 * 2 1 4 4 C 1.46901 * 110.99709 * 67.52724 * 3 2 1 5 5 C 1.50692 * 109.47424 * 66.96686 * 4 3 2 6 6 H 1.08006 * 120.00342 * 4.22520 * 5 4 3 7 7 C 1.37878 * 120.00311 * 184.23120 * 5 4 3 8 8 N 1.31516 * 119.99873 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00374 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46943 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47299 * 119.99312 * 9 7 5 12 12 H 1.48491 * 109.47176 * 239.99739 * 9 7 5 13 13 C 1.46897 * 110.99880 * 303.57537 * 3 2 1 14 14 C 1.52999 * 109.46982 * 290.09788 * 13 3 2 15 15 H 1.09005 * 109.46730 * 54.04773 * 14 13 3 16 16 C 1.52994 * 109.47356 * 174.04675 * 14 13 3 17 17 C 1.53001 * 109.47257 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46905 * 299.99607 * 17 16 14 19 19 C 1.53002 * 109.47024 * 60.00245 * 18 17 16 20 20 C 1.52999 * 109.47179 * 300.00027 * 19 18 17 21 21 H 1.09007 * 109.46774 * 300.00323 * 20 19 18 22 22 C 1.52994 * 109.47356 * 179.97438 * 20 19 18 23 23 H 1.09006 * 109.47002 * 306.66492 * 1 2 3 24 24 H 1.09001 * 109.47579 * 66.67050 * 1 2 3 25 25 H 1.08999 * 109.46960 * 186.67116 * 1 2 3 26 26 H 1.08998 * 109.46955 * 240.00167 * 2 1 3 27 27 H 1.09000 * 109.47399 * 120.00475 * 2 1 3 28 28 H 1.08997 * 109.47042 * 186.97022 * 4 3 2 29 29 H 1.09006 * 109.46858 * 306.96431 * 4 3 2 30 30 H 0.97003 * 119.99681 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46594 * 170.10557 * 13 3 2 32 32 H 1.08996 * 109.47733 * 50.10431 * 13 3 2 33 33 H 1.08998 * 109.47598 * 59.99869 * 16 14 13 34 34 H 1.09005 * 109.47032 * 300.00477 * 16 14 13 35 35 H 1.09004 * 109.46779 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.47189 * 59.99801 * 17 16 14 37 37 H 1.08995 * 109.47355 * 300.00092 * 18 17 16 38 38 H 1.08999 * 109.47021 * 180.02562 * 18 17 16 39 39 H 1.08997 * 109.46886 * 179.97438 * 19 18 17 40 40 H 1.09006 * 109.46799 * 60.00014 * 19 18 17 41 41 H 1.09003 * 109.47005 * 52.25990 * 22 20 19 42 42 H 1.08998 * 109.47538 * 172.25895 * 22 20 19 43 43 H 1.08999 * 109.47124 * 292.26836 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7008 2.0560 1.2673 5 6 2.4861 1.4189 2.3845 6 1 3.2056 0.6438 2.1653 7 6 2.2862 1.8253 3.6868 8 7 1.4104 2.7694 3.9539 9 14 3.2591 1.0350 5.0718 10 1 4.1720 0.0066 4.5113 11 1 4.0548 2.0742 5.7736 12 1 2.3237 0.3956 6.0317 13 6 1.4801 2.1341 -1.1426 14 6 2.1100 1.6144 -2.4364 15 1 1.9688 0.5355 -2.5014 16 6 1.4418 2.2893 -3.6359 17 6 2.0713 1.7691 -4.9298 18 6 3.5677 2.0884 -4.9332 19 6 4.2359 1.4135 -3.7336 20 6 3.6063 1.9336 -2.4398 21 1 3.7478 3.0125 -2.3751 22 6 4.2740 1.2583 -1.2403 23 1 -0.3633 0.6137 0.8244 24 1 -0.3634 0.4070 -0.9436 25 1 -0.3633 -1.0207 0.1194 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.9625 3.1117 1.1953 29 1 0.6345 1.9592 1.4715 30 1 1.2695 3.0551 4.8701 31 1 1.7121 3.1927 -1.0252 32 1 0.3990 2.0018 -1.1861 33 1 1.5829 3.3682 -3.5710 34 1 0.3758 2.0616 -3.6337 35 1 1.5956 2.2504 -5.7843 36 1 1.9299 0.6903 -4.9945 37 1 3.7091 3.1672 -4.8684 38 1 4.0161 1.7182 -5.8551 39 1 5.3019 1.6406 -3.7363 40 1 4.0944 0.3346 -3.7985 41 1 5.3557 1.3691 -1.3166 42 1 3.9250 1.7255 -0.3195 43 1 4.0173 0.1990 -1.2303 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346198836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:24 Heat of formation + Delta-G solvation = -23.632272 kcal Electronic energy + Delta-G solvation = -18559.558930 eV Core-core repulsion = 16024.571905 eV Total energy + Delta-G solvation = -2534.987025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.20681 -36.64049 -32.72384 -32.06463 -31.25494 -29.28580 -27.13889 -25.95397 -23.94438 -23.14316 -21.44317 -20.82657 -19.50022 -18.79586 -16.17797 -15.31770 -14.97889 -14.72416 -14.38215 -14.11543 -13.82452 -13.50982 -13.03016 -12.68891 -12.31037 -11.91685 -11.87532 -11.65761 -11.35426 -11.25362 -11.11437 -10.99006 -10.86599 -10.67031 -10.57813 -10.51047 -10.36994 -10.13609 -9.96186 -9.78348 -9.63174 -9.44685 -9.04304 -8.39283 -6.90457 -5.99225 -3.99778 3.32508 3.40299 3.44997 4.45175 4.82516 4.90057 4.99644 5.18624 5.36037 5.36983 5.49761 5.66313 5.70885 5.74999 5.78362 5.81495 5.87501 5.94672 6.13593 6.15015 6.17350 6.19483 6.26351 6.29795 6.39201 6.41930 6.45913 6.53911 6.61305 6.70678 6.75099 6.83994 6.94752 7.04941 7.38119 7.49270 7.61930 7.86512 8.17118 8.27842 8.62191 9.09296 9.64428 11.11408 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.034977 B = 0.006147 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.332106 B = 4553.991088 C = 4866.333573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 N -0.522 5.522 4 C 0.185 3.815 5 C -0.501 4.501 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.053 3.947 14 C -0.075 4.075 15 H 0.066 0.934 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.072 4.072 21 H 0.058 0.942 22 C -0.146 4.146 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.024 0.976 29 H -0.001 1.001 30 H 0.259 0.741 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.022 0.978 42 H 0.111 0.889 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 -2.496 -14.832 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.070 4.070 3 N -0.245 5.245 4 C 0.060 3.940 5 C -0.540 4.540 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.213 1.213 13 C -0.076 4.076 14 C -0.094 4.094 15 H 0.084 0.916 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.091 4.091 21 H 0.077 0.923 22 C -0.203 4.203 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.017 0.983 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.129 0.871 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.640 -2.403 -14.714 14.999 hybrid contribution -0.512 -0.311 0.886 1.069 sum 1.128 -2.714 -13.828 14.137 Atomic orbital electron populations 1.22383 0.99786 1.01109 1.01381 1.22002 0.91704 0.92028 1.01268 1.62608 1.56634 1.01629 1.03654 1.19796 0.95276 0.94165 0.84738 1.21201 1.21682 1.20520 0.90583 0.91833 1.24979 0.95515 0.95314 0.98838 1.69972 1.34789 1.29617 1.19590 0.86503 0.79909 0.79254 0.82120 1.19671 1.21126 1.21260 1.22145 0.96198 0.98077 0.91142 1.21185 0.94992 0.99878 0.93382 0.91561 1.21572 0.99011 1.00269 0.94444 1.21498 0.95686 1.00771 0.97388 1.21537 0.95531 1.00565 0.97985 1.21662 0.98950 0.99885 0.94808 1.20989 0.94138 0.99623 0.94331 0.92305 1.22151 0.96706 1.00767 1.00664 0.91713 0.93697 0.93588 0.92943 0.90186 0.95802 0.98313 0.93117 0.91915 0.95391 0.92219 0.92575 0.92716 0.92365 0.92316 0.92849 0.92647 0.92532 0.95933 0.87086 0.93867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 9.14 37.16 0.34 -2.99 16 2 C 0.06 1.10 5.29 -3.82 -0.02 1.08 16 3 N -0.52 -10.58 1.10 -236.08 -0.26 -10.84 16 4 C 0.19 4.66 4.59 -4.98 -0.02 4.64 16 5 C -0.50 -13.70 8.33 -34.44 -0.29 -13.98 16 6 H 0.06 1.73 7.38 -52.48 -0.39 1.34 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.05 0.93 4.02 -3.83 -0.02 0.91 16 14 C -0.08 -1.11 1.85 -90.62 -0.17 -1.28 16 15 H 0.07 1.01 6.53 -51.93 -0.34 0.67 16 16 C -0.11 -1.44 5.20 -26.73 -0.14 -1.58 16 17 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 18 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 19 C -0.12 -1.45 5.20 -26.73 -0.14 -1.59 16 20 C -0.07 -1.07 2.25 -90.62 -0.20 -1.27 16 21 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 22 C -0.15 -2.47 7.89 37.15 0.29 -2.17 16 23 H 0.06 1.33 6.22 -51.93 -0.32 1.00 16 24 H 0.04 0.73 6.53 -51.93 -0.34 0.39 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.89 6.23 -51.93 -0.32 0.57 16 27 H 0.08 1.67 6.84 -51.93 -0.36 1.32 16 28 H 0.02 0.65 7.86 -51.93 -0.41 0.24 16 29 H 0.00 -0.02 6.14 -51.93 -0.32 -0.34 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.06 1.15 7.84 -51.93 -0.41 0.74 16 32 H 0.03 0.49 5.87 -51.93 -0.30 0.19 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 42 H 0.11 2.25 5.74 -51.93 -0.30 1.95 16 43 H 0.04 0.73 7.36 -51.93 -0.38 0.35 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -27.65 314.70 -8.55 -36.20 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.97 Total: -1.10 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.78 Total: -19.71 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.48 Total: -36.68 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.65 -8.55 -36.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346198836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.566 kcal (2) G-P(sol) polarization free energy of solvation -27.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds