Wall clock time and date at job start Mon Mar 30 2020 17:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47070 * 2 1 4 4 C 1.46901 * 110.99709 * 67.52724 * 3 2 1 5 5 C 1.50692 * 109.47424 * 66.96686 * 4 3 2 6 6 H 1.08006 * 120.00342 * 4.22520 * 5 4 3 7 7 C 1.37878 * 120.00311 * 184.23120 * 5 4 3 8 8 N 1.31516 * 119.99873 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00374 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46943 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47299 * 119.99312 * 9 7 5 12 12 H 1.48491 * 109.47176 * 239.99739 * 9 7 5 13 13 C 1.46897 * 110.99880 * 303.57537 * 3 2 1 14 14 C 1.52999 * 109.46982 * 290.09788 * 13 3 2 15 15 H 1.09005 * 109.46730 * 54.04773 * 14 13 3 16 16 C 1.52994 * 109.47356 * 174.04675 * 14 13 3 17 17 C 1.53001 * 109.47257 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46905 * 299.99607 * 17 16 14 19 19 C 1.53002 * 109.47024 * 60.00245 * 18 17 16 20 20 C 1.52999 * 109.47179 * 300.00027 * 19 18 17 21 21 H 1.09007 * 109.46774 * 300.00323 * 20 19 18 22 22 C 1.52994 * 109.47356 * 179.97438 * 20 19 18 23 23 H 1.09006 * 109.47002 * 306.66492 * 1 2 3 24 24 H 1.09001 * 109.47579 * 66.67050 * 1 2 3 25 25 H 1.08999 * 109.46960 * 186.67116 * 1 2 3 26 26 H 1.08998 * 109.46955 * 240.00167 * 2 1 3 27 27 H 1.09000 * 109.47399 * 120.00475 * 2 1 3 28 28 H 1.08997 * 109.47042 * 186.97022 * 4 3 2 29 29 H 1.09006 * 109.46858 * 306.96431 * 4 3 2 30 30 H 0.97003 * 119.99681 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46594 * 170.10557 * 13 3 2 32 32 H 1.08996 * 109.47733 * 50.10431 * 13 3 2 33 33 H 1.08998 * 109.47598 * 59.99869 * 16 14 13 34 34 H 1.09005 * 109.47032 * 300.00477 * 16 14 13 35 35 H 1.09004 * 109.46779 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.47189 * 59.99801 * 17 16 14 37 37 H 1.08995 * 109.47355 * 300.00092 * 18 17 16 38 38 H 1.08999 * 109.47021 * 180.02562 * 18 17 16 39 39 H 1.08997 * 109.46886 * 179.97438 * 19 18 17 40 40 H 1.09006 * 109.46799 * 60.00014 * 19 18 17 41 41 H 1.09003 * 109.47005 * 52.25990 * 22 20 19 42 42 H 1.08998 * 109.47538 * 172.25895 * 22 20 19 43 43 H 1.08999 * 109.47124 * 292.26836 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7008 2.0560 1.2673 5 6 2.4861 1.4189 2.3845 6 1 3.2056 0.6438 2.1653 7 6 2.2862 1.8253 3.6868 8 7 1.4104 2.7694 3.9539 9 14 3.2591 1.0350 5.0718 10 1 4.1720 0.0066 4.5113 11 1 4.0548 2.0742 5.7736 12 1 2.3237 0.3956 6.0317 13 6 1.4801 2.1341 -1.1426 14 6 2.1100 1.6144 -2.4364 15 1 1.9688 0.5355 -2.5014 16 6 1.4418 2.2893 -3.6359 17 6 2.0713 1.7691 -4.9298 18 6 3.5677 2.0884 -4.9332 19 6 4.2359 1.4135 -3.7336 20 6 3.6063 1.9336 -2.4398 21 1 3.7478 3.0125 -2.3751 22 6 4.2740 1.2583 -1.2403 23 1 -0.3633 0.6137 0.8244 24 1 -0.3634 0.4070 -0.9436 25 1 -0.3633 -1.0207 0.1194 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.9625 3.1117 1.1953 29 1 0.6345 1.9592 1.4715 30 1 1.2695 3.0551 4.8701 31 1 1.7121 3.1927 -1.0252 32 1 0.3990 2.0018 -1.1861 33 1 1.5829 3.3682 -3.5710 34 1 0.3758 2.0616 -3.6337 35 1 1.5956 2.2504 -5.7843 36 1 1.9299 0.6903 -4.9945 37 1 3.7091 3.1672 -4.8684 38 1 4.0161 1.7182 -5.8551 39 1 5.3019 1.6406 -3.7363 40 1 4.0944 0.3346 -3.7985 41 1 5.3557 1.3691 -1.3166 42 1 3.9250 1.7255 -0.3195 43 1 4.0173 0.1990 -1.2303 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346198836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:24 Heat of formation + Delta-G solvation = -36.106497 kcal Electronic energy + Delta-G solvation = -18560.099853 eV Core-core repulsion = 16024.571905 eV Total energy + Delta-G solvation = -2535.527948 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48309 -38.09926 -34.76280 -33.25257 -32.46715 -30.98407 -28.78510 -27.39094 -25.34309 -24.96382 -22.69101 -22.01909 -20.74189 -20.21545 -18.33069 -16.91378 -16.65601 -16.11643 -15.79683 -15.25631 -14.98285 -14.86274 -14.60734 -14.20409 -13.79282 -13.47965 -13.18325 -13.15355 -12.84675 -12.66681 -12.64267 -12.50858 -12.38097 -12.28380 -12.08048 -11.89203 -11.75317 -11.57318 -11.40131 -11.29969 -11.04172 -10.72134 -10.64597 -10.55584 -8.59232 -8.15497 -6.24426 1.40657 1.41792 1.54766 2.42275 3.16833 3.40241 3.80218 3.96183 4.04660 4.25168 4.31741 4.41975 4.48161 4.56051 4.59938 4.68163 4.72291 4.74880 4.82816 4.84165 4.88187 5.02348 5.07422 5.12495 5.13708 5.24005 5.26037 5.28845 5.36335 5.37864 5.44016 5.48752 5.52235 5.56070 5.63823 5.72277 5.80293 6.10212 6.16988 6.46480 6.76157 6.94085 7.44952 8.94781 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.034977 B = 0.006147 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.332106 B = 4553.991088 C = 4866.333573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.059 3.941 3 N -0.520 5.520 4 C 0.202 3.798 5 C -0.510 4.510 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.963 3.037 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.054 3.946 14 C -0.065 4.065 15 H 0.068 0.932 16 C -0.112 4.112 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.071 4.071 21 H 0.049 0.951 22 C -0.139 4.139 23 H 0.029 0.971 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.056 0.944 28 H -0.007 1.007 29 H -0.027 1.027 30 H 0.262 0.738 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.074 0.926 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -3.773 -16.684 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.069 4.069 3 N -0.242 5.242 4 C 0.076 3.924 5 C -0.548 4.548 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.578 5.578 9 Si 0.788 3.212 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.207 1.207 13 C -0.074 4.074 14 C -0.084 4.084 15 H 0.086 0.914 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.089 4.089 21 H 0.067 0.933 22 C -0.197 4.197 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.011 0.989 29 H -0.010 1.010 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.239 -3.690 -16.589 17.141 hybrid contribution -0.702 0.105 1.433 1.600 sum 1.537 -3.585 -15.155 15.649 Atomic orbital electron populations 1.22275 0.98739 1.01899 1.00811 1.22013 0.92563 0.90894 1.01398 1.62591 1.57014 1.02285 1.02327 1.19415 0.93264 0.92745 0.86969 1.21473 1.21567 1.20296 0.91480 0.91995 1.25851 0.96505 0.95802 1.01521 1.70100 1.36385 1.31083 1.20247 0.85422 0.78517 0.78437 0.78774 1.18730 1.20706 1.20682 1.22217 0.96448 0.97142 0.91606 1.21102 0.94906 0.99927 0.92471 0.91382 1.21552 0.99299 0.99953 0.94237 1.21485 0.95534 1.01163 0.96766 1.21532 0.95525 1.00443 0.97902 1.21594 0.99168 1.00085 0.93929 1.20952 0.94202 0.98910 0.94871 0.93260 1.22006 0.97269 1.00351 1.00040 0.95173 0.91992 0.91361 0.90215 0.92501 0.98912 1.00952 0.92968 0.93469 0.95317 0.92470 0.91987 0.90964 0.91876 0.92387 0.90972 0.92215 0.92204 0.95282 0.90711 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.24 9.14 71.98 0.66 -5.59 16 2 C 0.06 2.23 5.29 86.30 0.46 2.68 16 3 N -0.52 -21.58 1.10 -900.81 -0.99 -22.58 16 4 C 0.20 10.70 4.59 85.55 0.39 11.09 16 5 C -0.51 -28.71 8.33 25.60 0.21 -28.49 16 6 H 0.06 3.44 7.38 -2.91 -0.02 3.42 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 9 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 C 0.05 1.92 4.02 86.30 0.35 2.26 16 14 C -0.07 -1.82 1.85 -10.80 -0.02 -1.84 16 15 H 0.07 1.90 6.53 -2.38 -0.02 1.89 16 16 C -0.11 -2.56 5.20 30.59 0.16 -2.40 16 17 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 18 C -0.12 -2.19 5.92 30.60 0.18 -2.01 16 19 C -0.11 -2.48 5.20 30.59 0.16 -2.32 16 20 C -0.07 -2.01 2.25 -10.80 -0.02 -2.03 16 21 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 22 C -0.14 -4.67 7.89 71.98 0.57 -4.10 16 23 H 0.03 1.25 6.22 -2.38 -0.01 1.24 16 24 H 0.06 1.93 6.53 -2.39 -0.02 1.92 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.08 2.57 6.23 -2.39 -0.01 2.56 16 27 H 0.06 2.40 6.84 -2.39 -0.02 2.38 16 28 H -0.01 -0.42 7.86 -2.39 -0.02 -0.44 16 29 H -0.03 -1.56 6.14 -2.38 -0.01 -1.58 16 30 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.05 1.80 7.84 -2.38 -0.02 1.78 16 32 H 0.03 1.01 5.87 -2.39 -0.01 1.00 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.03 0.90 8.13 -2.39 -0.02 0.88 16 42 H 0.07 3.10 5.74 -2.39 -0.01 3.08 16 43 H 0.04 1.36 7.36 -2.39 -0.02 1.34 16 Total: -1.00 -60.92 314.70 5.99 -54.93 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.94 Total: 11.63 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 3.73 Total: -34.14 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -0.71 Total: -79.23 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -60.92 5.99 -54.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346198836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.820 kcal (2) G-P(sol) polarization free energy of solvation -60.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds