Wall clock time and date at job start Mon Mar 30 2020 17:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.45468 * 2 1 4 4 C 1.53039 * 109.45986 * 240.02888 * 2 1 3 5 5 C 1.53119 * 109.28063 * 299.16436 * 4 2 1 6 6 H 1.08997 * 109.52771 * 62.25046 * 5 4 2 7 7 C 1.52995 * 109.52260 * 182.44407 * 5 4 2 8 8 C 1.53008 * 109.47241 * 179.68197 * 7 5 4 9 9 C 1.52996 * 109.47331 * 299.68080 * 7 5 4 10 10 C 1.53000 * 109.47323 * 59.68260 * 7 5 4 11 11 C 1.53121 * 109.15653 * 302.34584 * 5 4 2 12 12 C 1.53042 * 109.28136 * 57.65764 * 11 5 4 13 13 N 1.46842 * 109.46035 * 119.97691 * 2 1 3 14 14 C 1.46897 * 111.00220 * 294.17542 * 13 2 1 15 15 C 1.50705 * 109.46973 * 307.99390 * 14 13 2 16 16 H 1.07997 * 120.00079 * 354.80413 * 15 14 13 17 17 C 1.37872 * 119.99874 * 174.80049 * 15 14 13 18 18 N 1.31521 * 119.99916 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00341 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47105 * 89.99797 * 19 17 15 21 21 H 1.48506 * 109.47062 * 210.00313 * 19 17 15 22 22 H 1.48508 * 109.46788 * 329.99793 * 19 17 15 23 23 H 1.08999 * 109.47134 * 299.55404 * 1 2 3 24 24 H 1.08996 * 109.46855 * 59.55237 * 1 2 3 25 25 H 1.08996 * 109.46947 * 179.55127 * 1 2 3 26 26 H 1.09005 * 109.50494 * 59.10449 * 4 2 1 27 27 H 1.09001 * 109.50047 * 179.18489 * 4 2 1 28 28 H 1.08998 * 109.47074 * 59.99398 * 8 7 5 29 29 H 1.08998 * 109.47465 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46834 * 299.99846 * 8 7 5 31 31 H 1.08998 * 109.47325 * 59.99674 * 9 7 5 32 32 H 1.08999 * 109.47667 * 180.02562 * 9 7 5 33 33 H 1.09010 * 109.47050 * 300.00300 * 9 7 5 34 34 H 1.09004 * 109.47342 * 59.99792 * 10 7 5 35 35 H 1.08998 * 109.47182 * 180.02562 * 10 7 5 36 36 H 1.09002 * 109.47130 * 299.99464 * 10 7 5 37 37 H 1.08996 * 109.50606 * 297.71206 * 11 5 4 38 38 H 1.09003 * 109.50024 * 177.59580 * 11 5 4 39 39 H 1.08993 * 109.46101 * 60.83088 * 12 11 5 40 40 H 1.08992 * 109.46343 * 180.81311 * 12 11 5 41 41 H 1.08996 * 109.47145 * 67.99209 * 14 13 2 42 42 H 1.08996 * 109.47184 * 187.99961 * 14 13 2 43 43 H 0.97004 * 119.99834 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 1.5443 -2.1695 -1.2357 6 1 0.4548 -2.1822 -1.2673 7 6 2.1010 -2.9124 -2.4519 8 6 1.6115 -4.3619 -2.4322 9 6 1.6181 -2.2284 -3.7324 10 6 3.6302 -2.8899 -2.4072 11 6 2.0270 -2.8531 0.0465 12 6 1.5174 -2.0705 1.2590 13 7 2.0193 -0.6918 1.1993 14 6 1.6651 0.0504 2.4165 15 6 2.1141 1.4826 2.2801 16 1 2.6862 1.7892 1.4169 17 6 1.7946 2.4012 3.2572 18 7 2.1860 3.6512 3.1379 19 14 0.8057 1.8707 4.7506 20 1 1.7303 1.4231 5.8230 21 1 -0.0036 3.0155 5.2405 22 1 -0.0958 0.7519 4.3753 23 1 -0.3633 0.5069 0.8939 24 1 -0.3633 0.5208 -0.8859 25 1 -0.3633 -1.0276 -0.0080 26 1 1.6637 -0.2163 -2.1400 27 1 3.1298 -0.7086 -1.2580 28 1 0.5221 -4.3779 -2.4640 29 1 2.0085 -4.8913 -3.2984 30 1 1.9556 -4.8492 -1.5199 31 1 1.9668 -1.1958 -3.7464 32 1 2.0144 -2.7579 -4.5989 33 1 0.5286 -2.2444 -3.7642 34 1 3.9743 -3.3772 -1.4949 35 1 4.0268 -3.4188 -3.2739 36 1 3.9790 -1.8573 -2.4213 37 1 3.1166 -2.8750 0.0593 38 1 1.6415 -3.8721 0.0829 39 1 0.4275 -2.0608 1.2531 40 1 1.8714 -2.5465 2.1734 41 1 0.5850 0.0204 2.5591 42 1 2.1579 -0.4044 3.2757 43 1 1.9615 4.2974 3.8256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347622163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:31 Heat of formation + Delta-G solvation = -17.800607 kcal Electronic energy + Delta-G solvation = -18711.379427 eV Core-core repulsion = 16176.645282 eV Total energy + Delta-G solvation = -2534.734145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.77919 -36.79349 -32.86974 -31.35450 -31.17024 -27.82591 -27.35620 -27.17672 -26.04057 -23.48753 -22.15311 -21.05901 -18.76148 -17.66808 -16.65298 -15.59676 -14.90624 -14.47781 -14.26546 -13.91680 -13.87697 -13.57569 -13.14260 -12.77528 -12.60806 -12.31369 -12.13799 -11.84409 -11.74564 -11.60559 -11.44005 -11.24313 -10.95553 -10.87625 -10.70407 -10.58948 -10.43083 -10.23868 -9.90969 -9.73808 -9.69636 -9.41657 -8.97813 -8.54406 -7.19294 -6.03627 -4.00861 3.29636 3.36878 3.39249 4.43520 4.79511 4.87809 4.89858 4.92270 5.29135 5.37749 5.45998 5.49225 5.64468 5.70561 5.73296 5.75842 5.83517 5.87663 5.94042 6.02014 6.05126 6.08400 6.15636 6.19736 6.20985 6.25948 6.32426 6.32892 6.48839 6.51974 6.56482 6.65369 6.71756 6.83814 6.98624 7.11294 7.23733 7.63126 8.02565 8.22120 8.70649 9.03466 9.58602 11.09071 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.042768 B = 0.006180 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.535645 B = 4529.865154 C = 4717.632898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 H 0.100 0.900 4 C -0.108 4.108 5 C -0.075 4.075 6 H 0.064 0.936 7 C -0.064 4.064 8 C -0.141 4.141 9 C -0.142 4.142 10 C -0.144 4.144 11 C -0.110 4.110 12 C 0.049 3.951 13 N -0.522 5.522 14 C 0.158 3.842 15 C -0.509 4.509 16 H 0.082 0.918 17 C 0.069 3.931 18 N -0.901 5.901 19 Si 0.873 3.127 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.268 1.268 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.025 0.975 40 H 0.061 0.939 41 H -0.009 1.009 42 H 0.022 0.978 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.043 -13.765 -10.611 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.022 4.022 3 H 0.118 0.882 4 C -0.146 4.146 5 C -0.094 4.094 6 H 0.083 0.917 7 C -0.064 4.064 8 C -0.199 4.199 9 C -0.199 4.199 10 C -0.201 4.201 11 C -0.148 4.148 12 C -0.080 4.080 13 N -0.245 5.245 14 C 0.032 3.968 15 C -0.548 4.548 16 H 0.100 0.900 17 C -0.132 4.132 18 N -0.540 5.540 19 Si 0.700 3.300 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.192 1.192 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.009 0.991 42 H 0.040 0.960 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.533 -13.608 -10.538 17.279 hybrid contribution -1.495 -0.106 1.018 1.812 sum -3.027 -13.714 -9.520 16.966 Atomic orbital electron populations 1.22407 0.99046 1.00501 1.01862 1.21607 0.91776 0.99598 0.89186 0.88208 1.21793 1.01285 0.94254 0.97235 1.21224 0.99489 0.95295 0.93379 0.91729 1.20537 0.95729 0.94932 0.95223 1.21915 1.00661 0.95898 1.01398 1.21910 1.00709 1.00783 0.96507 1.21970 0.94716 1.02197 1.01183 1.21712 1.01601 0.97453 0.93986 1.22058 0.96895 0.91436 0.97621 1.62057 1.58672 1.00427 1.03370 1.20174 0.93855 0.94644 0.88156 1.21092 1.34507 0.90925 1.08236 0.89998 1.24897 0.95686 0.94815 0.97837 1.69899 1.46772 1.02545 1.34818 0.86895 0.80864 0.78386 0.83821 1.20182 1.21319 1.19243 0.92055 0.93408 0.93492 0.92366 0.91264 0.93082 0.93262 0.92418 0.92172 0.93293 0.93062 0.92302 0.93560 0.92057 0.91115 0.92554 0.95685 0.92010 0.99111 0.96003 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 8.19 37.16 0.30 -2.97 16 2 C 0.09 1.69 2.63 -67.72 -0.18 1.51 16 3 H 0.10 2.27 5.90 -51.93 -0.31 1.96 16 4 C -0.11 -1.68 4.18 -26.65 -0.11 -1.80 16 5 C -0.08 -1.02 1.31 -90.50 -0.12 -1.14 16 6 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16 7 C -0.06 -0.73 0.57 -154.51 -0.09 -0.81 16 8 C -0.14 -1.44 8.12 37.16 0.30 -1.13 16 9 C -0.14 -1.51 8.13 37.16 0.30 -1.20 16 10 C -0.14 -1.62 7.77 37.16 0.29 -1.33 16 11 C -0.11 -1.57 4.66 -26.65 -0.12 -1.69 16 12 C 0.05 0.85 5.17 -3.83 -0.02 0.83 16 13 N -0.52 -10.91 4.70 -228.13 -1.07 -11.98 16 14 C 0.16 3.86 3.50 -4.97 -0.02 3.84 16 15 C -0.51 -14.35 8.83 -34.44 -0.30 -14.65 16 16 H 0.08 2.49 6.59 -52.49 -0.35 2.15 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 19 Si 0.87 21.66 27.57 -169.99 -4.69 16.97 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.27 -6.44 6.40 56.52 0.36 -6.08 16 23 H 0.06 1.27 6.70 -51.93 -0.35 0.93 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.78 4.80 -51.93 -0.25 0.54 16 26 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 27 H 0.07 1.12 6.31 -51.93 -0.33 0.79 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.58 6.49 -51.93 -0.34 0.25 16 31 H 0.06 0.66 6.50 -51.93 -0.34 0.33 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.06 0.68 6.38 -51.93 -0.33 0.35 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.74 6.37 -51.93 -0.33 0.41 16 37 H 0.07 1.04 6.31 -51.93 -0.33 0.71 16 38 H 0.06 0.70 6.58 -51.93 -0.34 0.36 16 39 H 0.03 0.44 6.20 -51.93 -0.32 0.12 16 40 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 41 H -0.01 -0.22 5.54 -51.93 -0.29 -0.50 16 42 H 0.02 0.54 7.83 -51.93 -0.41 0.14 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -29.18 302.28 -7.71 -36.89 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.41 Total: -1.00 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 0.14 Total: -18.65 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.30 Total: -38.76 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.69 Total: 16.97 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.18 -7.71 -36.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347622163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.089 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds