Wall clock time and date at job start Mon Mar 30 2020 17:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.45468 * 2 1 4 4 C 1.53039 * 109.45986 * 240.02888 * 2 1 3 5 5 C 1.53119 * 109.28063 * 299.16436 * 4 2 1 6 6 H 1.08997 * 109.52771 * 62.25046 * 5 4 2 7 7 C 1.52995 * 109.52260 * 182.44407 * 5 4 2 8 8 C 1.53008 * 109.47241 * 179.68197 * 7 5 4 9 9 C 1.52996 * 109.47331 * 299.68080 * 7 5 4 10 10 C 1.53000 * 109.47323 * 59.68260 * 7 5 4 11 11 C 1.53121 * 109.15653 * 302.34584 * 5 4 2 12 12 C 1.53042 * 109.28136 * 57.65764 * 11 5 4 13 13 N 1.46842 * 109.46035 * 119.97691 * 2 1 3 14 14 C 1.46897 * 111.00220 * 294.17542 * 13 2 1 15 15 C 1.50705 * 109.46973 * 307.99390 * 14 13 2 16 16 H 1.07997 * 120.00079 * 354.80413 * 15 14 13 17 17 C 1.37872 * 119.99874 * 174.80049 * 15 14 13 18 18 N 1.31521 * 119.99916 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00341 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47105 * 89.99797 * 19 17 15 21 21 H 1.48506 * 109.47062 * 210.00313 * 19 17 15 22 22 H 1.48508 * 109.46788 * 329.99793 * 19 17 15 23 23 H 1.08999 * 109.47134 * 299.55404 * 1 2 3 24 24 H 1.08996 * 109.46855 * 59.55237 * 1 2 3 25 25 H 1.08996 * 109.46947 * 179.55127 * 1 2 3 26 26 H 1.09005 * 109.50494 * 59.10449 * 4 2 1 27 27 H 1.09001 * 109.50047 * 179.18489 * 4 2 1 28 28 H 1.08998 * 109.47074 * 59.99398 * 8 7 5 29 29 H 1.08998 * 109.47465 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46834 * 299.99846 * 8 7 5 31 31 H 1.08998 * 109.47325 * 59.99674 * 9 7 5 32 32 H 1.08999 * 109.47667 * 180.02562 * 9 7 5 33 33 H 1.09010 * 109.47050 * 300.00300 * 9 7 5 34 34 H 1.09004 * 109.47342 * 59.99792 * 10 7 5 35 35 H 1.08998 * 109.47182 * 180.02562 * 10 7 5 36 36 H 1.09002 * 109.47130 * 299.99464 * 10 7 5 37 37 H 1.08996 * 109.50606 * 297.71206 * 11 5 4 38 38 H 1.09003 * 109.50024 * 177.59580 * 11 5 4 39 39 H 1.08993 * 109.46101 * 60.83088 * 12 11 5 40 40 H 1.08992 * 109.46343 * 180.81311 * 12 11 5 41 41 H 1.08996 * 109.47145 * 67.99209 * 14 13 2 42 42 H 1.08996 * 109.47184 * 187.99961 * 14 13 2 43 43 H 0.97004 * 119.99834 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 1.5443 -2.1695 -1.2357 6 1 0.4548 -2.1822 -1.2673 7 6 2.1010 -2.9124 -2.4519 8 6 1.6115 -4.3619 -2.4322 9 6 1.6181 -2.2284 -3.7324 10 6 3.6302 -2.8899 -2.4072 11 6 2.0270 -2.8531 0.0465 12 6 1.5174 -2.0705 1.2590 13 7 2.0193 -0.6918 1.1993 14 6 1.6651 0.0504 2.4165 15 6 2.1141 1.4826 2.2801 16 1 2.6862 1.7892 1.4169 17 6 1.7946 2.4012 3.2572 18 7 2.1860 3.6512 3.1379 19 14 0.8057 1.8707 4.7506 20 1 1.7303 1.4231 5.8230 21 1 -0.0036 3.0155 5.2405 22 1 -0.0958 0.7519 4.3753 23 1 -0.3633 0.5069 0.8939 24 1 -0.3633 0.5208 -0.8859 25 1 -0.3633 -1.0276 -0.0080 26 1 1.6637 -0.2163 -2.1400 27 1 3.1298 -0.7086 -1.2580 28 1 0.5221 -4.3779 -2.4640 29 1 2.0085 -4.8913 -3.2984 30 1 1.9556 -4.8492 -1.5199 31 1 1.9668 -1.1958 -3.7464 32 1 2.0144 -2.7579 -4.5989 33 1 0.5286 -2.2444 -3.7642 34 1 3.9743 -3.3772 -1.4949 35 1 4.0268 -3.4188 -3.2739 36 1 3.9790 -1.8573 -2.4213 37 1 3.1166 -2.8750 0.0593 38 1 1.6415 -3.8721 0.0829 39 1 0.4275 -2.0608 1.2531 40 1 1.8714 -2.5465 2.1734 41 1 0.5850 0.0204 2.5591 42 1 2.1579 -0.4044 3.2757 43 1 1.9615 4.2974 3.8256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347622163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:30 Heat of formation + Delta-G solvation = -35.643568 kcal Electronic energy + Delta-G solvation = -18712.153156 eV Core-core repulsion = 16176.645282 eV Total energy + Delta-G solvation = -2535.507874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06161 -38.07796 -34.89474 -32.90328 -32.61214 -29.35274 -28.60059 -28.09227 -27.37447 -25.00864 -23.57703 -22.73952 -20.03202 -18.92743 -18.73482 -17.05991 -16.35895 -16.15473 -15.70819 -15.07436 -15.01098 -14.79991 -14.58062 -14.33912 -14.20881 -13.83497 -13.34655 -13.22696 -12.90165 -12.83536 -12.67531 -12.54799 -12.42501 -12.19397 -12.04775 -12.00973 -11.77551 -11.68613 -11.53559 -11.37141 -10.97120 -10.80976 -10.72834 -10.55976 -8.86378 -8.27926 -6.30660 1.32708 1.33506 1.43999 2.33280 3.05542 3.31505 3.81970 3.87083 3.90518 4.24413 4.30949 4.37387 4.44004 4.51236 4.63222 4.68161 4.68369 4.73178 4.81748 4.88529 4.92020 4.93280 5.02548 5.06894 5.09678 5.16321 5.17757 5.20352 5.22473 5.27181 5.33582 5.38941 5.41015 5.48453 5.52847 5.64699 5.68113 5.78398 6.06105 6.48466 6.74816 6.79348 7.33237 8.88038 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.042768 B = 0.006180 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.535645 B = 4529.865154 C = 4717.632898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 H 0.053 0.947 4 C -0.098 4.098 5 C -0.069 4.069 6 H 0.067 0.933 7 C -0.060 4.060 8 C -0.139 4.139 9 C -0.142 4.142 10 C -0.143 4.143 11 C -0.103 4.103 12 C 0.045 3.955 13 N -0.535 5.535 14 C 0.169 3.831 15 C -0.512 4.512 16 H 0.042 0.958 17 C 0.010 3.990 18 N -0.948 5.948 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.254 1.254 23 H 0.029 0.971 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.028 0.972 40 H 0.064 0.936 41 H -0.011 1.011 42 H 0.021 0.979 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -16.554 -11.134 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 H 0.071 0.929 4 C -0.136 4.136 5 C -0.088 4.088 6 H 0.085 0.915 7 C -0.060 4.060 8 C -0.196 4.196 9 C -0.199 4.199 10 C -0.200 4.200 11 C -0.140 4.140 12 C -0.083 4.083 13 N -0.259 5.259 14 C 0.041 3.959 15 C -0.550 4.550 16 H 0.060 0.940 17 C -0.187 4.187 18 N -0.589 5.589 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.178 1.178 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.007 0.993 42 H 0.039 0.961 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.660 -16.421 -11.078 19.986 hybrid contribution -1.072 0.799 1.093 1.727 sum -3.732 -15.622 -9.985 18.912 Atomic orbital electron populations 1.22306 0.97919 1.01582 1.01083 1.21542 0.92681 0.97696 0.90434 0.92906 1.21698 1.00651 0.95793 0.95448 1.21181 0.99565 0.93658 0.94349 0.91450 1.20492 0.95511 0.95704 0.94256 1.21890 1.00984 0.94639 1.02109 1.21906 1.01016 1.00353 0.96621 1.21964 0.94856 1.01492 1.01735 1.21691 1.01358 0.98322 0.92651 1.22202 0.97129 0.89373 0.99559 1.61995 1.59566 1.01993 1.02390 1.19924 0.93315 0.92695 0.89930 1.21293 1.33652 0.93266 1.06834 0.94016 1.25791 0.96969 0.94678 1.01262 1.70050 1.48601 1.03958 1.36267 0.85787 0.79510 0.78420 0.79663 1.19058 1.20785 1.17767 0.95141 0.91819 0.91366 0.91158 0.92227 0.92627 0.92044 0.92247 0.93079 0.91945 0.92644 0.92627 0.92061 0.93458 0.91572 0.89768 0.95359 0.91720 0.99312 0.96103 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.14 8.19 71.98 0.59 -5.55 16 2 C 0.09 3.36 2.63 44.94 0.12 3.48 16 3 H 0.05 2.57 5.90 -2.39 -0.01 2.55 16 4 C -0.10 -3.01 4.18 30.65 0.13 -2.88 16 5 C -0.07 -1.70 1.31 -10.72 -0.01 -1.71 16 6 H 0.07 1.66 6.55 -2.39 -0.02 1.65 16 7 C -0.06 -1.17 0.57 -52.18 -0.03 -1.20 16 8 C -0.14 -2.27 8.12 71.98 0.58 -1.69 16 9 C -0.14 -2.60 8.13 71.98 0.59 -2.02 16 10 C -0.14 -2.91 7.77 71.98 0.56 -2.35 16 11 C -0.10 -2.66 4.66 30.65 0.14 -2.52 16 12 C 0.05 1.50 5.17 86.33 0.45 1.95 16 13 N -0.54 -22.52 4.70 -875.67 -4.12 -26.63 16 14 C 0.17 8.31 3.50 85.56 0.30 8.61 16 15 C -0.51 -30.02 8.83 25.60 0.23 -29.79 16 16 H 0.04 2.72 6.59 -2.91 -0.02 2.70 16 17 C 0.01 0.60 5.47 84.65 0.46 1.07 16 18 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 19 Si 0.94 45.00 27.57 68.60 1.89 46.89 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.25 -11.45 6.40 99.48 0.64 -10.81 16 23 H 0.03 1.26 6.70 -2.39 -0.02 1.24 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.07 2.15 4.80 -2.39 -0.01 2.14 16 26 H 0.07 1.97 6.58 -2.38 -0.02 1.95 16 27 H 0.06 1.94 6.31 -2.39 -0.02 1.92 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.96 6.49 -2.38 -0.02 0.94 16 31 H 0.05 1.02 6.50 -2.39 -0.02 1.01 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.05 1.16 6.38 -2.38 -0.02 1.14 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 1.08 6.37 -2.39 -0.02 1.07 16 37 H 0.07 1.81 6.31 -2.39 -0.02 1.79 16 38 H 0.08 1.77 6.58 -2.39 -0.02 1.75 16 39 H 0.03 0.93 6.20 -2.39 -0.01 0.91 16 40 H 0.06 2.09 8.12 -2.39 -0.02 2.08 16 41 H -0.01 -0.53 5.54 -2.39 -0.01 -0.54 16 42 H 0.02 1.03 7.83 -2.39 -0.02 1.01 16 43 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -64.88 302.28 3.07 -61.81 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.90 Total: 12.19 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 4.10 Total: -34.61 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -3.82 Total: -86.27 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.89 Total: 46.89 kcal Total: -64.88 3.07 -61.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347622163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.169 kcal (2) G-P(sol) polarization free energy of solvation -64.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds