Wall clock time and date at job start Mon Mar 30 2020 17:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47466 * 2 1 4 4 C 1.53000 * 109.47296 * 239.99608 * 2 1 3 5 5 C 1.53000 * 109.47245 * 174.99908 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99900 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99521 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99788 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00469 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46972 * 270.00465 * 10 8 6 12 12 H 1.48506 * 109.46918 * 29.99909 * 10 8 6 13 13 H 1.48493 * 109.47245 * 150.00220 * 10 8 6 14 14 N 1.46902 * 109.46776 * 120.00131 * 2 1 3 15 15 C 1.46903 * 110.99945 * 274.05637 * 14 2 1 16 16 H 1.09003 * 109.46718 * 345.67574 * 15 14 2 17 17 C 1.52999 * 109.47039 * 105.67560 * 15 14 2 18 18 C 1.53002 * 109.47084 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47181 * 300.00164 * 18 17 15 20 20 C 1.53001 * 109.47051 * 59.99603 * 19 18 17 21 21 H 1.09007 * 109.47010 * 60.00708 * 20 19 18 22 22 C 1.53001 * 109.47051 * 180.02562 * 20 19 18 23 23 C 1.52993 * 109.47510 * 300.00217 * 20 19 18 24 24 H 1.08998 * 109.46725 * 301.24046 * 1 2 3 25 25 H 1.09003 * 109.46610 * 61.24080 * 1 2 3 26 26 H 1.09000 * 109.46871 * 181.23836 * 1 2 3 27 27 H 1.09003 * 109.46893 * 54.99691 * 4 2 1 28 28 H 1.08998 * 109.47150 * 295.00452 * 4 2 1 29 29 H 1.08998 * 109.46783 * 60.00500 * 5 4 2 30 30 H 1.08995 * 109.47018 * 300.00496 * 5 4 2 31 31 H 0.96996 * 120.00430 * 180.02562 * 9 8 6 32 32 H 1.00895 * 111.00607 * 38.01613 * 14 2 1 33 33 H 1.08997 * 109.46849 * 299.99873 * 17 15 14 34 34 H 1.08993 * 109.46845 * 60.00358 * 17 15 14 35 35 H 1.09003 * 109.46923 * 59.99861 * 18 17 15 36 36 H 1.08993 * 109.47322 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.47411 * 179.97438 * 19 18 17 38 38 H 1.09006 * 109.47024 * 300.00453 * 19 18 17 39 39 H 1.09003 * 109.46945 * 60.00080 * 22 20 19 40 40 H 1.09002 * 109.47211 * 180.02562 * 22 20 19 41 41 H 1.09006 * 109.47069 * 300.00537 * 22 20 19 42 42 H 1.08998 * 109.47568 * 300.00359 * 23 20 19 43 43 H 1.09002 * 109.47297 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0671 -1.3233 -2.5444 7 1 3.3686 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8157 9 7 5.8568 -1.9794 -3.8900 10 14 6.6267 -0.5309 -1.6573 11 1 6.8324 0.8772 -2.0819 12 1 6.0846 -0.5570 -0.2750 13 1 7.9234 -1.2536 -1.6943 14 7 2.0196 -0.6925 1.1995 15 6 2.1036 0.2278 2.3413 16 1 2.0299 1.2556 1.9857 17 6 0.9572 -0.0591 3.3131 18 6 1.0443 0.8999 4.5020 19 6 2.3816 0.7035 5.2188 20 6 3.5280 0.9904 4.2470 21 1 3.4541 2.0181 3.8912 22 6 4.8654 0.7933 4.9636 23 6 3.4410 0.0314 3.0581 24 1 -0.3633 0.5330 0.8787 25 1 -0.3633 0.4945 -0.9010 26 1 -0.3633 -1.0274 0.0222 27 1 1.6054 -0.2619 -2.1369 28 1 1.7517 -1.7716 -1.2055 29 1 3.9995 -1.0729 -0.4259 30 1 3.8532 0.4369 -1.3573 31 1 6.8074 -2.0058 -4.0807 32 1 1.4405 -1.4891 1.4189 33 1 0.0045 0.0813 2.8025 34 1 1.0310 -1.0868 3.6686 35 1 0.9703 1.9275 4.1461 36 1 0.2279 0.6952 5.1945 37 1 2.4439 1.3869 6.0655 38 1 2.4557 -0.3242 5.5746 39 1 4.9391 -0.2344 5.3192 40 1 5.6822 0.9982 4.2715 41 1 4.9277 1.4763 5.8109 42 1 3.5149 -0.9962 3.4139 43 1 4.2580 0.2356 2.3660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:43 Heat of formation + Delta-G solvation = -44.649974 kcal Electronic energy + Delta-G solvation = -17930.833715 eV Core-core repulsion = 15394.935294 eV Total energy + Delta-G solvation = -2535.898421 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.23302 -36.58355 -33.37879 -32.34059 -31.45754 -29.72653 -27.47639 -26.41947 -25.14632 -22.15101 -21.15364 -20.96808 -20.16094 -19.32382 -16.53462 -15.68456 -15.13735 -14.79926 -14.50965 -14.15859 -13.88753 -13.49966 -13.20287 -12.88421 -12.58612 -12.48072 -12.42202 -12.17992 -11.83519 -11.64058 -11.55836 -11.29201 -11.05847 -10.96356 -10.86510 -10.59720 -10.49554 -10.16168 -9.99108 -9.75753 -9.57235 -9.37761 -8.95758 -8.39495 -7.91922 -5.91105 -3.86756 3.41026 3.47863 3.56583 4.32052 4.59017 4.62461 4.73909 4.94543 5.04778 5.13103 5.29746 5.36576 5.41204 5.44885 5.47917 5.54418 5.60393 5.62211 5.67329 5.70213 5.82046 5.90558 5.98957 6.04625 6.09231 6.13228 6.15681 6.23601 6.28720 6.35036 6.47368 6.55880 6.62486 6.78080 7.16430 7.46476 7.58348 7.77704 7.82843 7.98513 8.69819 9.15374 9.73427 11.22890 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.006631 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.174367 B = 4221.585888 C = 5314.930341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 H 0.070 0.930 4 C -0.090 4.090 5 C -0.006 4.006 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.063 3.937 9 N -0.911 5.911 10 Si 0.879 3.121 11 H -0.281 1.281 12 H -0.260 1.260 13 H -0.291 1.291 14 N -0.672 5.672 15 C 0.090 3.910 16 H 0.065 0.935 17 C -0.142 4.142 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.093 4.093 21 H 0.066 0.934 22 C -0.146 4.146 23 C -0.102 4.102 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.001 0.999 31 H 0.260 0.740 32 H 0.337 0.663 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 6.442 18.663 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 H 0.088 0.912 4 C -0.128 4.128 5 C -0.043 4.043 6 C -0.553 4.553 7 H 0.085 0.915 8 C -0.137 4.137 9 N -0.551 5.551 10 Si 0.706 3.294 11 H -0.207 1.207 12 H -0.185 1.185 13 H -0.217 1.217 14 N -0.302 5.302 15 C -0.020 4.020 16 H 0.083 0.917 17 C -0.181 4.181 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.112 4.112 21 H 0.085 0.915 22 C -0.204 4.204 23 C -0.140 4.140 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.070 0.930 32 H 0.156 0.844 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.421 6.456 18.378 21.222 hybrid contribution -0.248 0.498 0.645 0.852 sum -8.670 6.954 19.023 22.032 Atomic orbital electron populations 1.22592 0.98430 1.01577 1.01335 1.21879 0.91232 0.97969 0.91685 0.91185 1.21453 0.98943 0.99029 0.93403 1.19466 0.91575 0.95745 0.97539 1.21279 0.92784 1.33861 1.07423 0.91460 1.25024 0.98444 0.95133 0.95054 1.69933 1.14374 1.44239 1.26520 0.86778 0.80392 0.79413 0.82781 1.20692 1.18454 1.21746 1.60548 1.57085 1.09411 1.03109 1.21614 0.94039 0.96240 0.90153 0.91659 1.22264 0.98936 0.99931 0.96974 1.21473 0.97242 0.99554 0.97052 1.21595 0.94318 1.01482 0.97639 1.21155 0.94513 0.99869 0.95687 0.91548 1.21815 0.97047 1.01470 1.00034 1.21599 0.97580 0.99097 0.95732 0.93571 0.92307 0.92722 0.93066 0.92919 0.94980 0.98063 0.93017 0.84406 0.92236 0.91728 0.92205 0.92392 0.92444 0.92060 0.92752 0.92548 0.93115 0.91936 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 9.14 37.16 0.34 -2.01 16 2 C 0.08 1.31 2.53 -67.71 -0.17 1.14 16 3 H 0.07 1.16 7.34 -51.93 -0.38 0.78 16 4 C -0.09 -1.83 4.83 -26.73 -0.13 -1.96 16 5 C -0.01 -0.15 3.93 -27.88 -0.11 -0.26 16 6 C -0.52 -15.29 9.66 -34.44 -0.33 -15.62 16 7 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -29.12 13.96 55.43 0.77 -28.34 16 10 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 11 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 13 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 14 N -0.67 -10.24 5.58 -99.74 -0.56 -10.80 16 15 C 0.09 1.16 2.53 -67.71 -0.17 0.99 16 16 H 0.07 0.89 7.15 -51.93 -0.37 0.51 16 17 C -0.14 -1.50 5.07 -26.73 -0.14 -1.63 16 18 C -0.11 -1.07 5.92 -26.73 -0.16 -1.23 16 19 C -0.11 -1.06 5.20 -26.73 -0.14 -1.20 16 20 C -0.09 -1.01 2.72 -90.62 -0.25 -1.26 16 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 22 C -0.15 -1.50 9.19 37.16 0.34 -1.15 16 23 C -0.10 -1.35 4.81 -26.73 -0.13 -1.48 16 24 H 0.05 0.53 6.66 -51.93 -0.35 0.19 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.03 0.82 6.81 -51.93 -0.35 0.46 16 30 H 0.00 0.03 7.57 -51.93 -0.39 -0.37 16 31 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 32 H 0.34 4.72 7.91 -39.29 -0.31 4.40 16 33 H 0.06 0.61 6.65 -51.93 -0.35 0.27 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -31.12 327.26 -9.09 -40.20 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.43 Total: -0.23 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -1.14 Total: -23.84 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.22 Total: -39.14 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.12 -9.09 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.447 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds