Wall clock time and date at job start Mon Mar 30 2020 17:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 H 1.09000 * 109.47042 * 301.86936 * 3 2 1 5 5 C 1.50695 * 109.47436 * 181.86595 * 3 2 1 6 6 H 1.08001 * 120.00008 * 275.38505 * 5 3 2 7 7 C 1.37878 * 120.00026 * 95.38713 * 5 3 2 8 8 N 1.31509 * 120.00089 * 188.20235 * 7 5 3 9 9 Si 1.86800 * 119.99865 * 8.19668 * 7 5 3 10 10 H 1.48501 * 109.47273 * 87.00921 * 9 7 5 11 11 H 1.48506 * 109.47060 * 207.00865 * 9 7 5 12 12 H 1.48503 * 109.47197 * 327.00743 * 9 7 5 13 13 N 1.46901 * 109.47286 * 61.86528 * 3 2 1 14 14 C 1.39776 * 111.00092 * 62.53305 * 13 3 2 15 15 C 1.54427 * 111.76918 * 189.14039 * 14 13 3 16 16 C 1.50758 * 109.02750 * 282.60521 * 15 14 13 17 17 C 1.54167 * 112.61035 * 93.00988 * 16 15 14 18 18 H 1.09000 * 108.98188 * 79.12324 * 17 16 15 19 19 C 1.52991 * 108.98268 * 197.84281 * 17 16 15 20 20 C 1.53817 * 111.97576 * 318.48735 * 17 16 15 21 21 H 1.09003 * 109.05105 * 79.58546 * 20 17 16 22 22 C 1.52995 * 109.05178 * 198.49276 * 20 17 16 23 23 C 1.47630 * 111.00150 * 191.44016 * 13 3 2 24 24 H 1.08991 * 109.47044 * 60.00438 * 1 2 3 25 25 H 1.08999 * 109.46730 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47371 * 299.99754 * 1 2 3 27 27 H 1.08991 * 109.47689 * 239.99663 * 2 1 3 28 28 H 1.09005 * 109.46969 * 119.99422 * 2 1 3 29 29 H 0.97000 * 120.00133 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.01843 * 309.72691 * 14 13 3 31 31 H 1.09000 * 109.02485 * 68.55146 * 14 13 3 32 32 H 1.09003 * 109.54915 * 162.74278 * 15 14 13 33 33 H 1.08995 * 109.54828 * 42.46755 * 15 14 13 34 34 H 1.08998 * 108.85238 * 332.20160 * 16 15 14 35 35 H 1.09001 * 108.85352 * 213.81734 * 16 15 14 36 36 H 1.09006 * 109.47432 * 59.99727 * 19 17 16 37 37 H 1.09000 * 109.47180 * 180.02562 * 19 17 16 38 38 H 1.09000 * 109.47247 * 299.99862 * 19 17 16 39 39 H 1.08995 * 109.47725 * 59.99325 * 22 20 17 40 40 H 1.08998 * 109.47339 * 180.02562 * 22 20 17 41 41 H 1.09006 * 109.46932 * 299.99424 * 22 20 17 42 42 H 1.08994 * 109.74804 * 30.68888 * 23 13 3 43 43 H 1.09008 * 109.74400 * 269.96334 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6495 1.9659 -0.8727 5 6 3.5462 1.4428 -0.0463 6 1 4.1146 1.3451 0.8669 7 6 4.1988 1.5680 -1.2544 8 7 5.5025 1.4073 -1.3172 9 14 3.2310 1.9657 -2.8018 10 1 3.0925 3.4382 -2.9344 11 1 3.9477 1.4273 -3.9859 12 1 1.8836 1.3475 -2.7156 13 7 1.5875 2.1219 1.2213 14 6 2.1175 1.5098 2.3607 15 6 1.4805 2.0602 3.6553 16 6 2.0845 3.4060 3.9666 17 6 1.2647 4.5733 3.3817 18 1 0.4059 4.7613 4.0261 19 6 2.1405 5.8272 3.3449 20 6 0.7654 4.2698 1.9588 21 1 -0.1148 3.6298 2.0196 22 6 0.3800 5.5827 1.2742 23 6 1.8220 3.5769 1.1352 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 5.9617 1.4957 -2.1671 30 1 1.9362 0.4365 2.3042 31 1 3.1927 1.6860 2.3911 32 1 1.6763 1.3734 4.4788 33 1 0.4048 2.1670 3.5157 34 1 3.0932 3.4430 3.5552 35 1 2.1431 3.5240 5.0486 36 1 3.0142 5.6420 2.7200 37 1 1.5681 6.6582 2.9328 38 1 2.4631 6.0749 4.3562 39 1 1.2506 6.2367 1.2261 40 1 0.0245 5.3754 0.2649 41 1 -0.4104 6.0712 1.8442 42 1 1.7506 3.9006 0.0969 43 1 2.8104 3.8146 1.5287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:55 Heat of formation + Delta-G solvation = -14.858342 kcal Electronic energy + Delta-G solvation = -19072.309829 eV Core-core repulsion = 16537.703270 eV Total energy + Delta-G solvation = -2534.606559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.37327 -36.22746 -33.06593 -32.21312 -31.69381 -28.87653 -26.92322 -26.76574 -23.58874 -23.18372 -22.30236 -20.75116 -18.80199 -17.88401 -16.82387 -15.71650 -15.28879 -14.77259 -14.26091 -13.65443 -13.50963 -13.05579 -12.80261 -12.71584 -12.56379 -12.23186 -11.97256 -11.66834 -11.59983 -11.38096 -11.19361 -11.08823 -10.88753 -10.80626 -10.38596 -10.11483 -10.00534 -9.88538 -9.76949 -9.60538 -9.59726 -9.43735 -9.18594 -8.52203 -6.91124 -6.10924 -4.10303 3.26012 3.35324 3.37772 4.39429 4.88385 5.10402 5.14806 5.21698 5.35121 5.56484 5.61859 5.75470 5.81701 5.82551 5.97671 6.04379 6.09797 6.12864 6.17055 6.24331 6.30648 6.31921 6.37058 6.38973 6.44491 6.57226 6.58081 6.64244 6.72576 6.76455 6.80546 6.89397 6.99551 7.06047 7.11078 7.24504 7.37274 7.66157 8.24725 8.49012 8.64218 8.95660 9.54804 11.02133 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.009237 C = 0.008445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.695787 B = 3030.657389 C = 3314.841087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.182 3.818 4 H 0.040 0.960 5 C -0.541 4.541 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.897 5.897 9 Si 0.869 3.131 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.261 1.261 13 N -0.546 5.546 14 C 0.078 3.922 15 C -0.119 4.119 16 C -0.113 4.113 17 C -0.080 4.080 18 H 0.057 0.943 19 C -0.152 4.152 20 C -0.085 4.085 21 H 0.077 0.923 22 C -0.148 4.148 23 C 0.084 3.916 24 H 0.039 0.961 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.263 0.737 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 5.032 7.101 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C 0.076 3.924 4 H 0.058 0.942 5 C -0.580 4.580 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.534 5.534 9 Si 0.697 3.303 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.269 5.269 14 C -0.052 4.052 15 C -0.157 4.157 16 C -0.151 4.151 17 C -0.099 4.099 18 H 0.075 0.925 19 C -0.209 4.209 20 C -0.104 4.104 21 H 0.095 0.905 22 C -0.206 4.206 23 C -0.044 4.044 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.830 4.972 7.022 13.064 hybrid contribution 0.630 0.298 -0.977 1.200 sum -9.200 5.270 6.045 12.205 Atomic orbital electron populations 1.21741 0.97828 0.99006 1.01421 1.21770 0.93384 0.99122 1.00666 1.19754 0.93805 0.90597 0.88269 0.94167 1.21624 0.90551 1.50758 0.95036 0.90641 1.25029 0.94621 0.94326 0.98661 1.69941 1.08212 1.49193 1.26094 0.86966 0.80941 0.79153 0.83279 1.20226 1.21575 1.18567 1.59292 1.61800 1.02321 1.03455 1.20842 0.96752 0.98341 0.89304 1.21527 1.00850 0.95718 0.97598 1.21458 0.99994 0.94577 0.99037 1.21471 0.97436 0.94605 0.96373 0.92453 1.22024 1.00236 0.97781 1.00886 1.21075 0.99785 0.95947 0.93616 0.90506 1.22012 1.00692 0.97808 1.00057 1.21539 0.96315 0.87942 0.98562 0.94213 0.95078 0.92193 0.93141 0.92844 0.92755 0.91777 0.95378 0.92769 0.91631 0.92038 0.93450 0.92430 0.92427 0.93670 0.92494 0.93033 0.93524 0.92130 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.77 37.16 0.36 -2.19 16 2 C -0.11 -2.34 5.16 -26.73 -0.14 -2.48 16 3 C 0.18 4.18 1.40 -68.87 -0.10 4.08 16 4 H 0.04 0.97 4.70 -51.93 -0.24 0.72 16 5 C -0.54 -14.61 8.02 -34.44 -0.28 -14.89 16 6 H 0.08 2.25 6.33 -52.49 -0.33 1.92 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 9 Si 0.87 21.27 27.16 -169.99 -4.62 16.65 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.14 6.58 56.52 0.37 -5.77 16 13 N -0.55 -10.90 3.22 -233.39 -0.75 -11.65 16 14 C 0.08 1.48 4.34 -6.75 -0.03 1.46 16 15 C -0.12 -1.84 5.65 -27.11 -0.15 -2.00 16 16 C -0.11 -1.67 4.69 -27.24 -0.13 -1.80 16 17 C -0.08 -1.11 2.56 -89.59 -0.23 -1.34 16 18 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 19 C -0.15 -1.96 8.06 37.15 0.30 -1.66 16 20 C -0.09 -1.30 2.06 -91.29 -0.19 -1.49 16 21 H 0.08 1.23 7.26 -51.93 -0.38 0.85 16 22 C -0.15 -2.00 7.91 37.16 0.29 -1.70 16 23 C 0.08 1.60 4.36 -4.52 -0.02 1.58 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.05 7.66 -51.93 -0.40 0.65 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.05 1.12 6.17 -51.93 -0.32 0.80 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.06 1.25 5.70 -51.93 -0.30 0.95 16 31 H 0.03 0.62 5.74 -51.93 -0.30 0.33 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.00 7.11 -51.93 -0.37 0.63 16 34 H 0.06 1.03 6.40 -51.93 -0.33 0.70 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.82 7.41 -51.93 -0.38 0.44 16 37 H 0.06 0.68 6.13 -51.93 -0.32 0.36 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.75 6.26 -51.93 -0.32 0.43 16 40 H 0.05 0.71 8.05 -51.93 -0.42 0.29 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 1.23 7.10 -51.93 -0.37 0.86 16 43 H 0.04 0.84 5.93 -51.92 -0.31 0.53 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -28.03 305.97 -8.02 -36.05 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.64 Total: 0.99 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -0.40 Total: -20.39 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.02 Total: -37.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.62 Total: 16.65 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.03 -8.02 -36.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.189 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds