Wall clock time and date at job start Mon Mar 30 2020 17:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52996 * 109.46957 * 2 1 4 4 H 1.08995 * 109.47211 * 302.83087 * 3 2 1 5 5 C 1.50700 * 109.46751 * 182.83351 * 3 2 1 6 6 H 1.07996 * 120.00492 * 240.00138 * 5 3 2 7 7 C 1.37882 * 120.00133 * 60.00161 * 5 3 2 8 8 N 1.31516 * 120.00051 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00052 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47556 * 59.99660 * 9 7 5 11 11 H 1.48504 * 109.47128 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47329 * 299.99542 * 9 7 5 13 13 N 1.46899 * 109.47366 * 62.83835 * 3 2 1 14 14 C 1.47622 * 110.99867 * 195.91440 * 13 3 2 15 15 C 1.50822 * 108.04461 * 150.31768 * 14 13 3 16 16 C 1.53818 * 111.61820 * 95.05827 * 15 14 13 17 17 C 1.54176 * 111.97346 * 319.04902 * 16 15 14 18 18 H 1.09006 * 108.85566 * 79.28924 * 17 16 15 19 19 C 1.52997 * 108.85834 * 197.78026 * 17 16 15 20 20 C 1.50805 * 112.54373 * 318.48481 * 17 16 15 21 21 H 1.09009 * 109.61742 * 333.20758 * 20 17 16 22 22 C 1.53002 * 109.50110 * 212.92892 * 20 17 16 23 23 C 1.39776 * 111.00074 * 67.00667 * 13 3 2 24 24 H 1.09001 * 109.47109 * 64.79129 * 1 2 3 25 25 H 1.09001 * 109.47212 * 184.79181 * 1 2 3 26 26 H 1.09000 * 109.46593 * 304.79200 * 1 2 3 27 27 H 1.09001 * 109.46261 * 240.00275 * 2 1 3 28 28 H 1.08999 * 109.47001 * 120.00396 * 2 1 3 29 29 H 0.96990 * 120.00263 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.75074 * 269.95254 * 14 13 3 31 31 H 1.08997 * 109.75218 * 30.63677 * 14 13 3 32 32 H 1.08996 * 109.05288 * 215.61235 * 15 14 13 33 33 H 1.09007 * 109.04698 * 334.58534 * 15 14 13 34 34 H 1.08999 * 108.98123 * 79.68797 * 16 15 14 35 35 H 1.08997 * 108.98487 * 198.40877 * 16 15 14 36 36 H 1.09005 * 109.46861 * 59.99830 * 19 17 16 37 37 H 1.08997 * 109.47317 * 179.97438 * 19 17 16 38 38 H 1.09003 * 109.46932 * 299.99939 * 19 17 16 39 39 H 1.09002 * 109.46587 * 300.50624 * 22 20 17 40 40 H 1.09000 * 109.47321 * 60.50299 * 22 20 17 41 41 H 1.08997 * 109.47478 * 180.50503 * 22 20 17 42 42 H 1.08999 * 109.02664 * 309.73026 * 23 13 3 43 43 H 1.09001 * 109.01959 * 68.63424 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6359 1.9707 -0.8635 5 6 3.5454 1.4430 -0.0702 6 1 4.1228 1.8974 0.7212 7 6 4.1857 0.8634 -1.1451 8 7 3.4826 0.3095 -2.1087 9 14 6.0516 0.8634 -1.2318 10 1 6.6019 0.1432 -0.0554 11 1 6.4893 0.1843 -2.4778 12 1 6.5472 2.2633 -1.2314 13 7 1.6072 2.1149 1.2322 14 6 1.7410 3.5800 1.1103 15 6 0.6848 4.2193 1.9767 16 6 1.2351 4.5823 3.3664 17 6 2.1588 3.4822 3.9265 18 1 3.1405 3.5763 3.4622 19 6 2.3055 3.6811 5.4364 20 6 1.6277 2.0946 3.6682 21 1 0.5416 2.1285 3.5821 22 6 2.0226 1.1733 4.8242 23 6 2.2339 1.5608 2.3520 24 1 -0.3633 0.4377 -0.9298 25 1 -0.3634 -1.0241 0.0858 26 1 -0.3632 0.5864 0.8440 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.9330 -0.0979 -2.8650 30 1 2.7304 3.8889 1.4476 31 1 1.5963 3.8780 0.0719 32 1 0.3247 5.1250 1.4888 33 1 -0.1468 3.5244 2.0949 34 1 1.7970 5.5134 3.2930 35 1 0.4001 4.7269 4.0518 36 1 1.3252 3.6153 5.9084 37 1 2.9569 2.9076 5.8431 38 1 2.7386 4.6618 5.6332 39 1 3.1087 1.1441 4.9108 40 1 1.5941 1.5510 5.7526 41 1 1.6462 0.1684 4.6328 42 1 2.1209 0.4771 2.3225 43 1 3.2952 1.8080 2.3238 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:58 Heat of formation + Delta-G solvation = -14.350399 kcal Electronic energy + Delta-G solvation = -18975.461911 eV Core-core repulsion = 16440.877379 eV Total energy + Delta-G solvation = -2534.584533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.32343 -36.02507 -33.24859 -32.37241 -31.08099 -28.70464 -26.90303 -26.35198 -23.82492 -22.98205 -22.26505 -20.19905 -18.99918 -18.34707 -16.37417 -15.27048 -14.87529 -14.58700 -14.39807 -14.26387 -13.28100 -13.08519 -12.67814 -12.39673 -12.36763 -12.11738 -11.99736 -11.59663 -11.39748 -11.18266 -11.05001 -10.88871 -10.78801 -10.63311 -10.53880 -10.16674 -9.97686 -9.88830 -9.72335 -9.60954 -9.46096 -9.18937 -8.97858 -8.32613 -6.91736 -5.94201 -4.07960 3.29316 3.34492 3.37220 4.42073 4.95458 5.13847 5.21904 5.26833 5.30397 5.58490 5.68883 5.71995 5.79479 5.82706 6.00467 6.08058 6.17383 6.22440 6.26483 6.30495 6.35856 6.41974 6.45530 6.52240 6.58775 6.66228 6.72652 6.73169 6.79574 6.86203 7.02209 7.06969 7.19853 7.26271 7.47064 7.68520 7.84499 8.11103 8.26790 8.42991 8.77692 9.04774 9.59676 11.04083 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.008335 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.804004 B = 3358.488474 C = 3690.521187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.220 3.780 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.550 5.550 14 C 0.076 3.924 15 C -0.117 4.117 16 C -0.107 4.107 17 C -0.087 4.087 18 H 0.064 0.936 19 C -0.149 4.149 20 C -0.090 4.090 21 H 0.072 0.928 22 C -0.143 4.143 23 C 0.090 3.910 24 H 0.036 0.964 25 H 0.023 0.977 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 4.510 10.347 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.114 3.886 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.274 5.274 14 C -0.052 4.052 15 C -0.155 4.155 16 C -0.145 4.145 17 C -0.105 4.105 18 H 0.082 0.918 19 C -0.206 4.206 20 C -0.109 4.109 21 H 0.091 0.909 22 C -0.200 4.200 23 C -0.040 4.040 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.634 4.330 10.229 12.035 hybrid contribution 2.021 0.141 -0.229 2.038 sum -2.614 4.471 9.999 11.261 Atomic orbital electron populations 1.21716 0.98927 0.98394 1.00555 1.21621 0.92176 0.99384 1.01806 1.19256 0.92482 0.90894 0.85963 0.94617 1.21741 0.92892 1.37287 1.06111 0.92668 1.24905 0.97779 0.95144 0.95606 1.69863 1.34961 1.37864 1.09825 0.86768 0.86438 0.78136 0.77300 1.20384 1.21276 1.20452 1.59266 1.60534 1.02892 1.04660 1.21514 0.96338 0.88767 0.98577 1.21480 0.99784 0.99655 0.94556 1.21932 0.98338 0.97418 0.96783 1.21037 0.99567 0.95065 0.94879 0.91750 1.22083 1.01140 1.00748 0.96611 1.21152 1.00877 0.93493 0.95331 0.90933 1.21934 1.00957 0.99208 0.97950 1.20824 0.95441 0.99076 0.88682 0.94436 0.95766 0.93068 0.89149 0.94926 0.92911 0.95033 0.91877 0.93170 0.91103 0.93181 0.93032 0.93124 0.92259 0.93843 0.93081 0.92874 0.93198 0.91530 0.96012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.84 37.16 0.37 -2.47 16 2 C -0.11 -2.64 5.10 -26.73 -0.14 -2.78 16 3 C 0.22 5.37 1.67 -68.87 -0.12 5.25 16 4 H 0.04 0.97 7.64 -51.93 -0.40 0.58 16 5 C -0.54 -14.45 7.61 -34.44 -0.26 -14.72 16 6 H 0.06 1.50 6.18 -52.49 -0.32 1.17 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.96 11.30 55.43 0.63 -24.33 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.55 -11.39 3.15 -233.39 -0.73 -12.12 16 14 C 0.08 1.45 5.02 -4.52 -0.02 1.43 16 15 C -0.12 -1.82 5.41 -27.40 -0.15 -1.97 16 16 C -0.11 -1.49 5.28 -25.69 -0.14 -1.63 16 17 C -0.09 -1.27 2.11 -91.11 -0.19 -1.47 16 18 H 0.06 1.07 6.58 -51.93 -0.34 0.73 16 19 C -0.15 -1.81 7.75 37.16 0.29 -1.52 16 20 C -0.09 -1.41 2.33 -90.97 -0.21 -1.62 16 21 H 0.07 1.18 7.10 -51.92 -0.37 0.81 16 22 C -0.14 -1.97 7.74 37.16 0.29 -1.68 16 23 C 0.09 1.77 3.70 -6.74 -0.02 1.74 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.01 7.55 -51.93 -0.39 0.62 16 27 H 0.09 2.40 6.00 -51.93 -0.31 2.09 16 28 H 0.03 0.77 6.26 -51.93 -0.33 0.44 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.03 0.63 6.66 -51.93 -0.35 0.29 16 31 H 0.06 1.27 7.51 -51.93 -0.39 0.88 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.16 7.25 -51.93 -0.38 0.78 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.66 7.96 -51.93 -0.41 0.24 16 36 H 0.05 0.57 7.80 -51.93 -0.40 0.17 16 37 H 0.06 0.70 6.09 -51.93 -0.32 0.39 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.70 7.65 -51.93 -0.40 0.31 16 40 H 0.05 0.63 6.40 -51.93 -0.33 0.30 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.40 5.77 -51.93 -0.30 1.10 16 43 H 0.02 0.48 5.67 -51.93 -0.29 0.19 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -26.62 307.38 -8.60 -35.22 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.70 Total: 0.03 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -0.40 Total: -19.67 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.11 Total: -36.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.62 -8.60 -35.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.869 kcal (2) G-P(sol) polarization free energy of solvation -26.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds