Wall clock time and date at job start Mon Mar 30 2020 17:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47094 * 2 1 4 4 C 1.50702 * 109.47198 * 240.00060 * 2 1 3 5 5 H 1.08002 * 120.00184 * 239.99940 * 4 2 1 6 6 C 1.37882 * 119.99971 * 60.00011 * 4 2 1 7 7 N 1.31518 * 119.99964 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99966 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47145 * 60.00090 * 8 6 4 10 10 H 1.48503 * 109.47208 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47295 * 299.99827 * 8 6 4 12 12 N 1.46896 * 109.47478 * 119.99980 * 2 1 3 13 13 C 1.46896 * 111.00200 * 275.00576 * 12 2 1 14 14 H 1.09000 * 109.47585 * 34.99017 * 13 12 2 15 15 C 1.53002 * 109.46862 * 274.99658 * 13 12 2 16 16 C 1.53002 * 109.47454 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.46698 * 299.99898 * 16 15 13 18 18 C 1.52993 * 109.47066 * 179.97438 * 16 15 13 19 19 C 1.53006 * 109.46886 * 59.99664 * 16 15 13 20 20 C 1.52999 * 109.46997 * 300.00398 * 19 16 15 21 21 C 1.53006 * 109.46623 * 179.97438 * 20 19 16 22 22 C 1.52997 * 109.47269 * 299.99832 * 20 19 16 23 23 C 1.52996 * 109.47438 * 154.99811 * 13 12 2 24 24 H 1.08999 * 109.47071 * 59.99847 * 1 2 3 25 25 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47330 * 300.00033 * 1 2 3 27 27 H 0.96998 * 120.00191 * 180.02562 * 7 6 4 28 28 H 1.00897 * 111.00222 * 151.04174 * 12 2 1 29 29 H 1.09002 * 109.47067 * 59.99778 * 15 13 12 30 30 H 1.09004 * 109.46930 * 299.99861 * 15 13 12 31 31 H 1.08996 * 109.47340 * 299.99580 * 18 16 15 32 32 H 1.08992 * 109.47718 * 60.00009 * 18 16 15 33 33 H 1.09004 * 109.46672 * 180.02562 * 18 16 15 34 34 H 1.09000 * 109.46866 * 180.02562 * 19 16 15 35 35 H 1.09001 * 109.46611 * 60.00303 * 19 16 15 36 36 H 1.09001 * 109.47002 * 179.97438 * 21 20 19 37 37 H 1.08993 * 109.46955 * 300.00075 * 21 20 19 38 38 H 1.09000 * 109.47050 * 59.99904 * 21 20 19 39 39 H 1.09000 * 109.47140 * 300.00547 * 22 20 19 40 40 H 1.09001 * 109.47230 * 59.99691 * 22 20 19 41 41 H 1.09001 * 109.47375 * 180.02562 * 22 20 19 42 42 H 1.08996 * 109.47452 * 59.99844 * 23 13 12 43 43 H 1.09001 * 109.46997 * 299.99418 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8259 -0.4205 -5.2205 11 1 3.8063 -1.1209 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.2576 0.9329 2.2907 15 6 3.4111 0.9809 2.3223 16 6 3.4762 1.9344 3.5171 17 1 2.6514 2.6447 3.4604 18 6 4.8051 2.6922 3.4929 19 6 3.3705 1.1326 4.8159 20 6 2.0419 0.3743 4.8403 21 6 1.9365 -0.4281 6.1389 22 6 0.8841 1.3712 4.7609 23 6 1.9770 -0.5797 3.6453 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1615 -3.4844 28 1 2.9173 -1.1205 1.0286 29 1 3.4862 1.5525 1.3973 30 1 4.2359 0.2705 2.3785 31 1 5.6297 1.9817 3.5498 32 1 4.8809 3.2634 2.5677 33 1 4.8517 3.3712 4.3444 34 1 3.4165 1.8119 5.6671 35 1 4.1954 0.4223 4.8725 36 1 0.9898 -0.9680 6.1566 37 1 2.7613 -1.1383 6.1950 38 1 1.9831 0.2509 6.9903 39 1 0.9305 2.0506 5.6120 40 1 0.9594 1.9426 3.8357 41 1 -0.0625 0.8311 4.7787 42 1 2.8019 -1.2900 3.7016 43 1 1.0305 -1.1200 3.6628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:13 Heat of formation + Delta-G solvation = -39.391238 kcal Electronic energy + Delta-G solvation = -18417.716715 eV Core-core repulsion = 15882.046330 eV Total energy + Delta-G solvation = -2535.670385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.59760 -35.64506 -33.78288 -32.66841 -30.03112 -27.28973 -26.76857 -26.38730 -25.92003 -25.07161 -21.05051 -20.26752 -19.48494 -18.21939 -16.42936 -15.09837 -14.86358 -14.73909 -14.21233 -14.04475 -13.71504 -13.16566 -12.96717 -12.52054 -12.41849 -12.25689 -11.84313 -11.66469 -11.58522 -11.39084 -11.21608 -11.00946 -10.94213 -10.77329 -10.58403 -10.44039 -10.30430 -10.26282 -10.08240 -9.85560 -9.76075 -9.40665 -8.78473 -8.43386 -7.13324 -5.99176 -4.05205 3.32707 3.37056 3.39979 4.42530 4.81034 4.82758 4.96392 5.20326 5.31687 5.35365 5.44939 5.50005 5.67180 5.71052 5.76393 5.86586 5.88908 5.90479 5.94810 6.01844 6.06383 6.10516 6.20480 6.23990 6.29434 6.31736 6.49169 6.54636 6.58260 6.68218 6.82430 6.87387 6.96961 7.21183 7.30747 7.59419 7.82424 7.96276 8.32635 8.48229 8.75952 9.06909 9.60549 11.07082 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.032526 B = 0.005992 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.652316 B = 4671.752847 C = 4990.782375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.685 5.685 13 C 0.088 3.912 14 H 0.072 0.928 15 C -0.140 4.140 16 C -0.091 4.091 17 H 0.070 0.930 18 C -0.146 4.146 19 C -0.098 4.098 20 C -0.066 4.066 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.092 4.092 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.003 0.997 27 H 0.261 0.739 28 H 0.329 0.671 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 1.802 14.485 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.315 5.315 13 C -0.023 4.023 14 H 0.090 0.910 15 C -0.179 4.179 16 C -0.110 4.110 17 H 0.088 0.912 18 C -0.203 4.203 19 C -0.136 4.136 20 C -0.066 4.066 21 C -0.196 4.196 22 C -0.201 4.201 23 C -0.130 4.130 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.939 1.660 14.478 14.866 hybrid contribution 1.098 0.128 -1.163 1.604 sum 4.037 1.788 13.315 14.028 Atomic orbital electron populations 1.21719 0.98116 0.99217 0.99186 1.19066 0.92362 0.92391 0.85655 0.98129 1.21251 1.31327 1.12413 0.90585 0.92409 1.24914 0.95102 0.95003 0.98978 1.69891 1.36709 1.22903 1.23459 0.86608 0.79041 0.79813 0.82202 1.20234 1.21337 1.20392 1.60797 1.31895 1.32715 1.06056 1.21557 0.95595 0.93541 0.91589 0.91009 1.22340 0.99323 0.98586 0.97655 1.21146 0.97559 0.97173 0.95147 0.91196 1.21824 0.97424 0.99844 1.01205 1.21619 0.96767 0.98309 0.96895 1.20559 0.95157 0.95623 0.95272 1.21844 1.01540 0.99585 0.96601 1.21958 0.97694 0.98782 1.01624 1.21559 1.01801 0.96950 0.92723 0.90248 0.95100 0.97802 0.92950 0.85408 0.91860 0.92534 0.93027 0.92796 0.93274 0.92691 0.92327 0.92775 0.92952 0.93203 0.93416 0.91878 0.92844 0.92650 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.18 37.16 0.34 -2.81 16 2 C 0.21 5.43 2.41 -68.87 -0.17 5.26 16 3 H 0.00 0.03 7.11 -51.93 -0.37 -0.34 16 4 C -0.52 -14.32 8.59 -34.44 -0.30 -14.62 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.69 11.32 55.43 0.63 -25.06 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 N -0.69 -14.73 6.05 -100.96 -0.61 -15.34 16 13 C 0.09 1.57 2.00 -67.72 -0.14 1.44 16 14 H 0.07 1.39 5.40 -51.93 -0.28 1.11 16 15 C -0.14 -2.29 4.44 -26.73 -0.12 -2.41 16 16 C -0.09 -1.23 2.45 -90.62 -0.22 -1.45 16 17 H 0.07 0.98 6.43 -51.93 -0.33 0.65 16 18 C -0.15 -1.76 9.19 37.15 0.34 -1.42 16 19 C -0.10 -1.19 4.01 -26.73 -0.11 -1.30 16 20 C -0.07 -0.82 0.77 -154.48 -0.12 -0.94 16 21 C -0.14 -1.51 8.47 37.16 0.31 -1.19 16 22 C -0.14 -1.81 7.78 37.16 0.29 -1.52 16 23 C -0.09 -1.40 4.34 -26.71 -0.12 -1.51 16 24 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.00 0.07 7.43 -51.93 -0.39 -0.32 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.33 6.99 7.96 -39.29 -0.31 6.68 16 29 H 0.06 1.19 7.43 -51.93 -0.39 0.80 16 30 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.88 4.81 -51.93 -0.25 0.63 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -27.80 319.70 -8.36 -36.16 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.09 Total: 3.83 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -0.09 Total: -20.86 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.02 Total: -40.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.80 -8.36 -36.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.234 kcal (2) G-P(sol) polarization free energy of solvation -27.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds