Wall clock time and date at job start Mon Mar 30 2020 17:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47297 * 2 1 4 4 C 1.50704 * 109.47016 * 240.00256 * 2 1 3 5 5 H 1.07994 * 120.00028 * 244.40647 * 4 2 1 6 6 C 1.37877 * 119.99653 * 64.12369 * 4 2 1 7 7 N 1.31518 * 119.99539 * 198.28732 * 6 4 2 8 8 Si 1.86794 * 120.00209 * 18.29047 * 6 4 2 9 9 H 1.48505 * 109.47161 * 95.16702 * 8 6 4 10 10 H 1.48501 * 109.47199 * 215.16394 * 8 6 4 11 11 H 1.48497 * 109.47401 * 335.16694 * 8 6 4 12 12 N 1.46901 * 109.46999 * 120.00388 * 2 1 3 13 13 C 1.47276 * 110.99890 * 273.04366 * 12 2 1 14 14 H 1.08669 * 108.81573 * 344.75174 * 13 12 2 15 15 C 1.52768 * 109.08622 * 105.21902 * 13 12 2 16 16 C 1.52199 * 110.74982 * 179.90277 * 15 13 12 17 17 H 1.11138 * 106.97154 * 190.28770 * 16 15 13 18 18 C 1.52841 * 110.63154 * 74.55641 * 16 15 13 19 19 C 1.51531 * 113.15415 * 308.33701 * 16 15 13 20 20 C 1.51852 * 115.72025 * 43.39000 * 19 16 15 21 21 C 1.54403 * 108.00987 * 197.56202 * 20 19 16 22 22 C 1.53114 * 111.02994 * 80.02893 * 20 19 16 23 23 C 1.52485 * 112.42145 * 316.27375 * 20 19 16 24 24 H 1.08998 * 109.47540 * 181.88999 * 1 2 3 25 25 H 1.09005 * 109.47221 * 301.88942 * 1 2 3 26 26 H 1.09005 * 109.46954 * 61.88648 * 1 2 3 27 27 H 0.97003 * 119.99998 * 180.02562 * 7 6 4 28 28 H 1.00903 * 110.99802 * 36.99968 * 12 2 1 29 29 H 1.09349 * 109.17184 * 300.60451 * 15 13 12 30 30 H 1.09317 * 109.21829 * 59.11699 * 15 13 12 31 31 H 1.08997 * 109.46910 * 292.97795 * 18 16 15 32 32 H 1.09000 * 109.46698 * 52.97559 * 18 16 15 33 33 H 1.08999 * 109.46670 * 172.97950 * 18 16 15 34 34 H 1.10231 * 108.73891 * 280.99190 * 19 16 15 35 35 H 1.10212 * 108.79999 * 165.92281 * 19 16 15 36 36 H 1.09006 * 109.46850 * 181.66585 * 21 20 19 37 37 H 1.08997 * 109.47265 * 301.66005 * 21 20 19 38 38 H 1.09002 * 109.47370 * 61.66838 * 21 20 19 39 39 H 1.09004 * 109.46881 * 294.88626 * 22 20 19 40 40 H 1.08994 * 109.47152 * 54.89123 * 22 20 19 41 41 H 1.09005 * 109.46667 * 174.88944 * 22 20 19 42 42 H 1.09299 * 109.41979 * 292.12949 * 23 20 19 43 43 H 1.09306 * 109.41491 * 173.26116 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5932 -1.6281 -1.1331 6 6 1.7708 -0.1917 -2.4810 7 7 1.8775 -0.9565 -3.5455 8 14 1.2649 1.5972 -2.6630 9 1 2.4624 2.4221 -2.9647 10 1 0.2845 1.7241 -3.7711 11 1 0.6457 2.0677 -1.3979 12 7 2.0197 -0.6926 1.1994 13 6 2.1267 0.2354 2.3380 14 1 2.0803 1.2550 1.9647 15 6 0.9762 -0.0288 3.3077 16 6 1.0519 0.9106 4.5028 17 1 0.3131 0.5463 5.2490 18 6 0.6148 2.3209 4.1079 19 6 2.4103 0.9122 5.1743 20 6 3.6071 0.9431 4.2402 21 6 4.8496 0.4978 5.0415 22 6 3.8728 2.3636 3.7344 23 6 3.4491 -0.0104 3.0608 24 1 -0.3634 -1.0271 0.0339 25 1 -0.3634 0.5429 0.8726 26 1 -0.3633 0.4843 -0.9065 27 1 1.6939 -0.5916 -4.4253 28 1 1.4309 -1.4794 1.4283 29 1 0.0263 0.1181 2.7864 30 1 1.0267 -1.0650 3.6521 31 1 1.3401 2.7450 3.4136 32 1 -0.3637 2.2773 3.6296 33 1 0.5562 2.9459 4.9990 34 1 2.4894 0.0191 5.8155 35 1 2.4707 1.7796 5.8516 36 1 5.7298 0.5397 4.3998 37 1 4.9896 1.1623 5.8940 38 1 4.7067 -0.5230 5.3960 39 1 3.0362 2.6920 3.1176 40 1 3.9841 3.0370 4.5841 41 1 4.7872 2.3729 3.1411 42 1 3.4774 -1.0419 3.4211 43 1 4.2757 0.1372 2.3610 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:20 Heat of formation + Delta-G solvation = -29.690835 kcal Electronic energy + Delta-G solvation = -18599.343721 eV Core-core repulsion = 16064.093977 eV Total energy + Delta-G solvation = -2535.249744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -39.58185 -35.96447 -33.86180 -32.55014 -30.64720 -27.52915 -27.08838 -26.51200 -26.00055 -24.94270 -21.43809 -20.26241 -20.13449 -17.70677 -16.62090 -15.49919 -14.99921 -14.35666 -14.22047 -14.06794 -13.63536 -13.58619 -13.11708 -13.05952 -12.46008 -12.20875 -12.11498 -12.03006 -11.85031 -11.53293 -11.45568 -11.14866 -10.92379 -10.89142 -10.75489 -10.54421 -10.51479 -10.22118 -10.09147 -9.93562 -9.70739 -9.39798 -9.14701 -8.28100 -7.29526 -6.03911 -3.93420 3.30315 3.39718 3.41984 4.47197 4.67323 4.70864 4.84708 5.15287 5.20130 5.26345 5.29110 5.31769 5.48669 5.64417 5.70929 5.74791 5.76649 5.81325 5.86843 5.90749 6.00337 6.03106 6.14621 6.17306 6.21673 6.27628 6.30455 6.32078 6.41464 6.51647 6.53458 6.59396 6.68776 6.75901 6.83944 6.92728 7.26766 7.81021 8.04693 8.47029 8.76798 9.13298 9.64473 11.09789 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.029886 B = 0.006782 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.675068 B = 4127.355290 C = 4301.541334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.188 3.812 3 H 0.027 0.973 4 C -0.502 4.502 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.893 5.893 8 Si 0.861 3.139 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.260 1.260 12 N -0.672 5.672 13 C 0.089 3.911 14 H 0.066 0.934 15 C -0.136 4.136 16 C -0.080 4.080 17 H 0.053 0.947 18 C -0.150 4.150 19 C -0.094 4.094 20 C -0.059 4.059 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.091 4.091 24 H 0.047 0.953 25 H 0.021 0.979 26 H 0.047 0.953 27 H 0.262 0.738 28 H 0.330 0.670 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 5.690 17.609 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.079 3.921 3 H 0.045 0.955 4 C -0.540 4.540 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.688 3.312 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.184 1.184 12 N -0.300 5.300 13 C -0.022 4.022 14 H 0.084 0.916 15 C -0.175 4.175 16 C -0.099 4.099 17 H 0.072 0.928 18 C -0.207 4.207 19 C -0.131 4.131 20 C -0.059 4.059 21 C -0.200 4.200 22 C -0.200 4.200 23 C -0.130 4.130 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.147 0.853 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.706 5.722 17.223 18.162 hybrid contribution -1.310 1.089 -0.061 1.705 sum -0.605 6.811 17.162 18.474 Atomic orbital electron populations 1.22859 1.01190 1.00185 0.99004 1.19642 0.88926 0.94243 0.89315 0.95497 1.20946 1.34648 1.10497 0.87957 0.90325 1.24877 0.95003 0.97113 0.95934 1.70008 1.49588 1.34892 0.98669 0.87194 0.78512 0.87434 0.78036 1.20747 1.21483 1.18417 1.60763 1.56612 1.09563 1.03099 1.21501 0.93225 0.96886 0.90583 0.91571 1.22186 0.99812 0.99028 0.96475 1.20718 0.96289 0.95716 0.97158 0.92844 1.21958 1.01235 0.96428 1.01127 1.21228 0.93224 1.01520 0.97161 1.20408 0.94277 0.95803 0.95440 1.22260 0.97686 1.00614 0.99487 1.22034 1.01804 0.95589 1.00597 1.21456 0.98265 0.98069 0.95171 0.93355 0.95993 0.93373 0.92863 0.85258 0.92097 0.92145 0.92033 0.92980 0.93209 0.92823 0.92792 0.92665 0.93324 0.92962 0.92202 0.93352 0.92682 0.92384 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 8.51 37.16 0.32 -3.45 16 2 C 0.19 4.43 2.08 -68.86 -0.14 4.29 16 3 H 0.03 0.66 5.82 -51.93 -0.30 0.36 16 4 C -0.50 -14.27 9.26 -34.44 -0.32 -14.59 16 5 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 6 C 0.07 2.10 5.31 -17.82 -0.09 2.00 16 7 N -0.89 -27.49 13.96 55.43 0.77 -26.72 16 8 Si 0.86 21.47 25.84 -169.99 -4.39 17.07 16 9 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.26 -6.11 5.62 56.52 0.32 -5.80 16 12 N -0.67 -13.66 6.10 -101.10 -0.62 -14.28 16 13 C 0.09 1.47 2.40 -67.78 -0.16 1.31 16 14 H 0.07 1.19 5.29 -52.11 -0.28 0.92 16 15 C -0.14 -1.93 4.47 -27.26 -0.12 -2.05 16 16 C -0.08 -0.96 2.60 -91.85 -0.24 -1.19 16 17 H 0.05 0.60 8.29 -50.70 -0.42 0.18 16 18 C -0.15 -1.77 8.92 37.08 0.33 -1.44 16 19 C -0.09 -1.06 4.12 -28.06 -0.12 -1.17 16 20 C -0.06 -0.71 0.71 -154.56 -0.11 -0.82 16 21 C -0.14 -1.54 8.08 37.89 0.31 -1.24 16 22 C -0.14 -1.73 8.00 37.22 0.30 -1.43 16 23 C -0.09 -1.37 4.10 -27.15 -0.11 -1.48 16 24 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 25 H 0.02 0.41 6.65 -51.93 -0.35 0.07 16 26 H 0.05 1.10 5.18 -51.93 -0.27 0.83 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 28 H 0.33 6.42 7.86 -39.29 -0.31 6.11 16 29 H 0.06 0.91 6.52 -51.73 -0.34 0.57 16 30 H 0.06 0.83 8.14 -51.75 -0.42 0.41 16 31 H 0.06 0.77 4.92 -51.93 -0.26 0.52 16 32 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.58 7.94 -51.23 -0.41 0.17 16 35 H 0.05 0.56 7.94 -51.24 -0.41 0.15 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.06 0.78 4.61 -51.93 -0.24 0.54 16 40 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.87 8.11 -51.76 -0.42 0.45 16 43 H 0.07 1.11 8.13 -51.76 -0.42 0.69 16 LS Contribution 310.96 15.07 4.69 4.69 Total: -1.00 -29.32 310.96 -7.56 -36.88 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.84 Total: 3.62 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -0.17 Total: -21.26 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.16 Total: -41.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.39 Total: 17.07 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.32 -7.56 -36.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.188 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds