Wall clock time and date at job start Mon Mar 30 2020 17:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47112 * 2 1 4 4 H 1.08994 * 109.46838 * 57.71122 * 3 2 1 5 5 C 1.50702 * 109.47031 * 177.70681 * 3 2 1 6 6 H 1.07998 * 120.00157 * 116.76138 * 5 3 2 7 7 C 1.37885 * 119.99873 * 296.76434 * 5 3 2 8 8 N 1.31515 * 119.99544 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99989 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46812 * 90.00028 * 9 7 5 11 11 H 1.48497 * 109.47037 * 209.99764 * 9 7 5 12 12 H 1.48503 * 109.47277 * 330.00233 * 9 7 5 13 13 N 1.46899 * 109.47244 * 297.70352 * 3 2 1 14 14 C 1.46842 * 111.00305 * 299.44341 * 13 3 2 15 15 C 1.53035 * 109.52531 * 174.15981 * 14 13 3 16 16 C 1.53130 * 109.27727 * 59.17640 * 15 14 13 17 17 C 1.53123 * 109.15858 * 302.34812 * 16 15 14 18 18 C 1.46845 * 110.99816 * 175.22820 * 13 3 2 19 19 H 1.09000 * 109.45994 * 65.82762 * 18 13 3 20 20 C 1.50704 * 109.46397 * 305.85886 * 18 13 3 21 21 N 1.34780 * 119.99514 * 152.22365 * 20 18 13 22 22 O 1.21282 * 119.99870 * 332.22444 * 20 18 13 23 23 H 1.08997 * 109.47334 * 185.07958 * 1 2 3 24 24 H 1.08999 * 109.46853 * 305.08227 * 1 2 3 25 25 H 1.09003 * 109.47135 * 65.07543 * 1 2 3 26 26 H 1.09008 * 109.46711 * 240.00156 * 2 1 3 27 27 H 1.08999 * 109.46845 * 120.00456 * 2 1 3 28 28 H 0.97004 * 119.99491 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46132 * 294.17741 * 14 13 3 30 30 H 1.08996 * 109.46257 * 54.15284 * 14 13 3 31 31 H 1.08993 * 109.50373 * 179.11463 * 15 14 13 32 32 H 1.08998 * 109.50458 * 299.20339 * 15 14 13 33 33 H 1.08998 * 109.51687 * 62.25190 * 16 15 14 34 34 H 1.08999 * 109.51831 * 182.37988 * 16 15 14 35 35 H 1.08994 * 109.49747 * 177.59702 * 17 16 15 36 36 H 1.09004 * 109.50164 * 297.67315 * 17 16 15 37 37 H 0.96991 * 120.00195 * 359.97438 * 21 20 18 38 38 H 0.97002 * 119.99545 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6435 1.9680 0.8687 5 6 3.5459 1.4429 0.0569 6 1 4.1172 1.8529 -0.7628 7 6 4.1945 0.9195 1.1554 8 7 5.5087 0.9194 1.2047 9 14 3.2064 0.2108 2.5734 10 1 2.9675 -1.2355 2.3361 11 1 3.9619 0.3864 3.8397 12 1 1.9043 0.9180 2.6717 13 7 1.5962 2.1188 -1.2262 14 6 2.1234 1.4446 -2.4194 15 6 1.5259 2.0846 -3.6745 16 6 1.8872 3.5724 -3.7043 17 6 1.3688 4.2411 -2.4281 18 6 1.9709 3.5385 -1.2092 19 1 3.0569 3.6278 -1.2382 20 6 1.4480 4.1809 0.0498 21 7 2.0835 5.2462 0.5768 22 8 0.4553 3.7392 0.5886 23 1 -0.3634 -1.0236 0.0910 24 1 -0.3633 0.5907 0.8410 25 1 -0.3633 0.4331 -0.9320 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 5.9649 0.5516 1.9777 29 1 3.2087 1.5437 -2.4427 30 1 1.8558 0.3885 -2.3879 31 1 1.9294 1.5943 -4.5603 32 1 0.4417 1.9732 -3.6589 33 1 2.9701 3.6831 -3.7596 34 1 1.4281 4.0412 -4.5747 35 1 1.6601 5.2914 -2.4236 36 1 0.2820 4.1647 -2.3929 37 1 2.8776 5.5992 0.1460 38 1 1.7467 5.6600 1.3869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251340887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:51 Heat of formation + Delta-G solvation = -41.413492 kcal Electronic energy + Delta-G solvation = -19031.826523 eV Core-core repulsion = 16294.809441 eV Total energy + Delta-G solvation = -2737.017082 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71139 -37.38938 -34.89220 -33.05661 -32.02746 -31.01539 -30.22919 -27.08143 -24.19901 -23.21948 -22.37814 -20.20359 -19.77635 -18.89418 -17.02758 -16.57608 -16.13091 -15.28300 -14.49802 -14.31704 -14.05751 -13.65860 -13.34269 -13.15708 -12.67436 -12.57233 -12.38493 -11.90375 -11.63536 -11.53021 -11.03240 -10.80415 -10.69680 -10.53543 -10.47363 -10.09602 -9.84799 -9.55411 -9.47741 -9.30460 -9.10302 -8.87782 -8.54394 -7.12003 -6.12794 -4.12820 3.28045 3.29953 3.38854 3.47387 4.02235 4.40395 4.84268 5.18436 5.21010 5.26812 5.36531 5.68377 5.74252 5.90446 6.02132 6.05927 6.13827 6.17436 6.27944 6.30105 6.35397 6.39809 6.53515 6.62999 6.82824 6.86577 6.89916 7.03987 7.21863 7.24363 7.39901 7.56850 7.80322 8.11280 8.19881 8.43666 8.87979 8.90276 9.52649 10.99466 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.011066 C = 0.010120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.313835 B = 2529.553376 C = 2766.089970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.171 3.829 4 H 0.056 0.944 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.078 3.922 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.260 1.260 13 N -0.503 5.503 14 C 0.058 3.942 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.105 4.105 18 C 0.077 3.923 19 H 0.067 0.933 20 C 0.533 3.467 21 N -0.860 5.860 22 O -0.532 6.532 23 H 0.029 0.971 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.010 6.299 -6.757 11.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.064 3.936 4 H 0.074 0.926 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.125 4.125 8 N -0.536 5.536 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.184 1.184 13 N -0.227 5.227 14 C -0.070 4.070 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.036 4.036 19 H 0.085 0.915 20 C 0.318 3.682 21 N -0.424 5.424 22 O -0.406 6.406 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.226 0.774 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.037 5.784 -6.462 11.168 hybrid contribution 1.013 -0.116 1.123 1.517 sum -6.024 5.667 -5.339 9.845 Atomic orbital electron populations 1.21682 0.97129 0.98725 1.02140 1.21885 0.94289 0.99076 1.00371 1.19944 0.93745 0.90815 0.89132 0.92641 1.21655 0.90503 1.41092 1.05248 0.90739 1.24915 0.94605 0.95009 0.97983 1.69916 1.07404 1.45972 1.30324 0.86960 0.80847 0.79896 0.81611 1.20353 1.22473 1.18433 1.62152 1.58364 0.98930 1.03290 1.22005 0.97900 0.98270 0.88869 1.21650 1.01271 0.95050 0.97674 1.21525 1.00716 0.96321 0.96734 1.21525 1.01428 0.97827 0.93536 1.21350 0.98977 0.91544 0.91684 0.91499 1.20530 0.82933 0.78937 0.85781 1.43872 1.32807 1.34459 1.31246 1.90673 1.26015 1.61758 1.62198 0.95214 0.93515 0.92201 0.92465 0.93689 0.92743 0.93814 0.90729 0.92342 0.91725 0.92180 0.92336 0.92142 0.91044 0.77428 0.77621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.71 37.16 0.36 -2.45 16 2 C -0.12 -2.70 4.72 -26.73 -0.13 -2.82 16 3 C 0.17 4.11 0.96 -68.86 -0.07 4.05 16 4 H 0.06 1.49 4.63 -51.93 -0.24 1.25 16 5 C -0.55 -14.75 7.73 -34.44 -0.27 -15.01 16 6 H 0.07 2.14 6.09 -52.49 -0.32 1.82 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 9 Si 0.88 22.48 24.55 -169.99 -4.17 18.31 16 10 H -0.28 -6.93 6.85 56.52 0.39 -6.54 16 11 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 12 H -0.26 -6.71 6.45 56.52 0.36 -6.34 16 13 N -0.50 -10.37 3.67 -221.53 -0.81 -11.18 16 14 C 0.06 1.07 4.80 -3.84 -0.02 1.06 16 15 C -0.12 -1.74 6.09 -26.65 -0.16 -1.90 16 16 C -0.12 -1.55 6.00 -26.60 -0.16 -1.71 16 17 C -0.10 -1.54 5.36 -26.65 -0.14 -1.69 16 18 C 0.08 1.43 1.89 -68.88 -0.13 1.30 16 19 H 0.07 1.32 7.02 -51.93 -0.36 0.96 16 20 C 0.53 10.32 6.19 -10.98 -0.07 10.26 16 21 N -0.86 -12.75 8.87 31.22 0.28 -12.47 16 22 O -0.53 -12.26 15.96 5.56 0.09 -12.18 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 1.16 7.82 -51.93 -0.41 0.75 16 26 H 0.06 1.25 6.18 -51.92 -0.32 0.93 16 27 H 0.04 1.09 3.68 -51.93 -0.19 0.90 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.04 0.90 6.58 -51.93 -0.34 0.56 16 30 H 0.07 1.41 5.98 -51.93 -0.31 1.10 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.40 4.82 8.83 -40.82 -0.36 4.45 16 38 H 0.39 5.19 8.93 -40.82 -0.36 4.83 16 LS Contribution 285.50 15.07 4.30 4.30 Total: -1.00 -32.17 285.50 -6.21 -38.38 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.79 Total: 7.78 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.88 Total: -6.82 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.24 Total: -49.78 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.17 Total: 18.31 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.17 -6.21 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251340887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.033 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds