Wall clock time and date at job start Mon Mar 30 2020 17:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47064 * 2 1 4 4 N 1.46496 * 109.47242 * 179.97438 * 3 2 1 5 5 C 1.34781 * 120.00412 * 180.02562 * 4 3 2 6 6 O 1.21277 * 119.99379 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00287 * 180.02562 * 5 4 3 8 8 H 1.09003 * 109.49406 * 299.99478 * 7 5 4 9 9 C 1.53038 * 109.49670 * 179.97438 * 7 5 4 10 10 C 1.53041 * 109.53818 * 178.67908 * 9 7 5 11 11 C 1.53202 * 109.30849 * 61.36498 * 10 9 7 12 12 N 1.46920 * 108.77343 * 305.36430 * 11 10 9 13 13 C 1.36945 * 120.62604 * 233.61047 * 12 11 10 14 14 H 1.08004 * 119.99433 * 151.83153 * 13 12 11 15 15 C 1.38805 * 119.99978 * 331.82811 * 13 12 11 16 16 N 1.31616 * 120.00409 * 343.07831 * 15 13 12 17 17 Si 1.86798 * 119.99776 * 163.08018 * 15 13 12 18 18 H 1.48499 * 109.47317 * 90.00087 * 17 15 13 19 19 H 1.48504 * 109.47300 * 210.00036 * 17 15 13 20 20 H 1.48504 * 109.47328 * 329.99768 * 17 15 13 21 21 C 1.46932 * 118.76762 * 53.59155 * 12 11 10 22 22 H 1.08994 * 109.47423 * 299.99922 * 1 2 3 23 23 H 1.08999 * 109.47245 * 60.00422 * 1 2 3 24 24 H 1.09004 * 109.47112 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46823 * 119.99897 * 2 1 3 26 26 H 1.08994 * 109.47423 * 240.00078 * 2 1 3 27 27 H 1.08994 * 109.47542 * 300.00261 * 3 2 1 28 28 H 1.09008 * 109.46879 * 59.99879 * 3 2 1 29 29 H 0.97001 * 120.00276 * 359.97438 * 4 3 2 30 30 H 1.09000 * 109.45955 * 298.70398 * 9 7 5 31 31 H 1.09004 * 109.46484 * 58.65893 * 9 7 5 32 32 H 1.09001 * 109.49950 * 181.31506 * 10 9 7 33 33 H 1.08997 * 109.49838 * 301.38237 * 10 9 7 34 34 H 1.08995 * 109.58559 * 65.15714 * 11 10 9 35 35 H 1.09008 * 109.57965 * 185.57686 * 11 10 9 36 36 H 0.97004 * 120.00615 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.61733 * 186.63867 * 21 12 11 38 38 H 1.09002 * 109.56258 * 66.21168 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1789 2.6097 0.0012 6 8 3.5724 3.6600 0.0008 7 6 5.6858 2.6097 0.0013 8 1 6.0496 2.0956 0.8910 9 6 6.1966 4.0524 0.0014 10 6 7.7266 4.0536 0.0347 11 6 8.2612 3.3515 -1.2176 12 7 7.6605 2.0134 -1.3022 13 6 8.4496 0.9010 -1.4262 14 1 8.1059 -0.0498 -1.0463 15 6 9.6909 0.9956 -2.0401 16 7 9.9770 2.0395 -2.7889 17 14 10.9554 -0.3588 -1.8034 18 1 10.7861 -1.3848 -2.8635 19 1 12.3210 0.2187 -1.8872 20 1 10.7646 -0.9871 -0.4714 21 6 6.1972 1.8906 -1.2509 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9563 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 3.9900 0.6025 0.0013 30 1 5.8525 4.5595 -0.9000 31 1 5.8139 4.5731 0.8792 32 1 8.0892 5.0813 0.0584 33 1 8.0716 3.5256 0.9237 34 1 7.9935 3.9289 -2.1025 35 1 9.3455 3.2618 -1.1514 36 1 10.8444 2.1054 -3.2182 37 1 5.9197 0.8375 -1.2064 38 1 5.7612 2.3483 -2.1389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050998654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:03 Heat of formation + Delta-G solvation = -59.957540 kcal Electronic energy + Delta-G solvation = -17659.846860 eV Core-core repulsion = 14922.025647 eV Total energy + Delta-G solvation = -2737.821212 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09167 -38.68653 -36.75255 -34.94062 -33.63945 -32.27776 -31.68283 -27.32338 -27.14650 -24.52468 -23.75531 -22.53372 -21.63780 -20.51547 -18.79945 -17.73185 -17.14891 -16.80891 -16.66753 -15.93663 -15.59315 -15.20295 -14.96209 -14.48389 -14.26086 -14.13776 -13.82502 -13.39251 -13.27102 -12.99653 -12.89585 -12.68353 -12.35680 -12.08697 -12.02278 -11.97985 -11.74016 -11.71513 -11.56010 -11.16848 -10.75950 -10.51274 -10.07912 -8.71039 -7.86333 -5.33569 1.49810 1.52156 1.60964 1.62816 2.25186 2.53627 3.29947 3.57554 3.86304 3.91374 4.00563 4.07368 4.12038 4.37021 4.39258 4.49715 4.63071 4.68952 4.74973 4.79015 4.90411 4.92834 5.05565 5.16436 5.17113 5.20389 5.26038 5.27675 5.36271 5.50845 5.55761 5.66737 5.75052 6.38526 6.54070 7.13865 7.24572 7.82929 8.36757 9.20728 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.005836 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.408024 B = 4796.342701 C = 5609.579660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.116 3.884 4 N -0.721 5.721 5 C 0.525 3.475 6 O -0.582 6.582 7 C -0.114 4.114 8 H 0.107 0.893 9 C -0.083 4.083 10 C -0.129 4.129 11 C 0.173 3.827 12 N -0.606 5.606 13 C -0.265 4.265 14 H 0.077 0.923 15 C -0.050 4.050 16 N -0.937 5.937 17 Si 0.969 3.031 18 H -0.285 1.285 19 H -0.296 1.296 20 H -0.266 1.266 21 C 0.162 3.838 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.413 0.587 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.061 0.939 34 H -0.008 1.008 35 H 0.058 0.942 36 H 0.250 0.750 37 H 0.074 0.926 38 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.569 -4.301 7.538 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.007 4.007 4 N -0.373 5.373 5 C 0.311 3.689 6 O -0.463 6.463 7 C -0.137 4.137 8 H 0.125 0.875 9 C -0.121 4.121 10 C -0.168 4.168 11 C 0.047 3.953 12 N -0.329 5.329 13 C -0.395 4.395 14 H 0.094 0.906 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.797 3.203 18 H -0.212 1.212 19 H -0.223 1.223 20 H -0.191 1.191 21 C 0.036 3.964 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.250 0.750 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.010 0.990 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -13.879 -3.557 7.447 16.147 hybrid contribution 1.099 -0.617 -0.416 1.328 sum -12.779 -4.174 7.031 15.171 Atomic orbital electron populations 1.21680 0.93812 1.02840 1.02256 1.21705 0.97479 0.93875 1.03588 1.21485 0.78949 0.98898 1.01410 1.46033 1.07869 1.08663 1.74721 1.20807 0.90195 0.83520 0.74329 1.90623 1.71159 1.32882 1.51591 1.21783 0.90004 0.99634 1.02279 0.87508 1.21129 0.95203 0.94322 1.01445 1.22042 0.95139 1.00314 0.99321 1.20654 0.97737 0.84215 0.92651 1.44285 1.00415 1.03193 1.84969 1.19576 0.98948 0.89994 1.30934 0.90554 1.25844 1.01870 0.99957 0.96868 1.70206 1.22306 1.32530 1.33206 0.85256 0.78098 0.78626 0.78309 1.21160 1.22251 1.19078 1.20822 0.84532 0.98352 0.92696 0.92256 0.92627 0.91009 0.90232 0.90774 0.92867 0.92179 0.75007 0.93764 0.91467 0.91103 0.92042 0.99028 0.92369 0.94124 0.90787 0.97782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.13 -1.87 6.05 30.59 0.19 -1.68 16 3 C 0.12 2.47 5.67 86.38 0.49 2.96 16 4 N -0.72 -17.88 5.46 -463.07 -2.53 -20.40 16 5 C 0.52 17.17 7.16 87.66 0.63 17.80 16 6 O -0.58 -22.90 15.98 -3.02 -0.05 -22.95 16 7 C -0.11 -3.93 2.67 -11.47 -0.03 -3.96 16 8 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 9 C -0.08 -3.02 4.46 30.62 0.14 -2.89 16 10 C -0.13 -4.97 6.08 30.68 0.19 -4.79 16 11 C 0.17 8.46 5.30 86.37 0.46 8.92 16 12 N -0.61 -29.85 2.99 -699.08 -2.09 -31.94 16 13 C -0.26 -14.00 9.58 84.03 0.81 -13.19 16 14 H 0.08 3.80 7.89 -2.91 -0.02 3.77 16 15 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 16 N -0.94 -55.06 11.20 21.65 0.24 -54.81 16 17 Si 0.97 43.53 29.59 68.60 2.03 45.56 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 21 C 0.16 6.54 5.66 86.36 0.49 7.03 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.41 8.42 8.02 -92.71 -0.74 7.67 16 30 H 0.04 1.75 8.13 -2.39 -0.02 1.73 16 31 H 0.07 2.27 8.07 -2.38 -0.02 2.25 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.06 3.18 6.06 -2.38 -0.01 3.16 16 36 H 0.25 14.24 8.31 -92.70 -0.77 13.46 16 37 H 0.07 2.66 7.54 -2.39 -0.02 2.64 16 38 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -66.22 305.71 2.36 -63.86 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.28 Total: 13.92 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 4.48 Total: 6.78 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -4.38 Total: -107.16 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -66.22 2.36 -63.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050998654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.901 kcal (2) G-P(sol) polarization free energy of solvation -66.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds