Wall clock time and date at job start Mon Mar 30 2020 17:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47219 * 2 1 4 4 C 1.52995 * 109.46881 * 120.00276 * 2 1 3 5 5 N 1.46504 * 109.47228 * 175.00030 * 4 2 1 6 6 C 1.36928 * 120.00394 * 179.97438 * 5 4 2 7 7 H 1.08011 * 119.99990 * 0.02562 * 6 5 4 8 8 C 1.38819 * 120.00263 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99801 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99683 * 0.02562 * 8 6 5 11 11 H 1.48508 * 109.46932 * 90.00102 * 10 8 6 12 12 H 1.48497 * 109.47030 * 209.99468 * 10 8 6 13 13 H 1.48495 * 109.47408 * 330.00109 * 10 8 6 14 14 N 1.46504 * 109.46831 * 239.99950 * 2 1 3 15 15 C 1.34776 * 119.99995 * 84.99992 * 14 2 1 16 16 O 1.21285 * 120.00005 * 0.02562 * 15 14 2 17 17 C 1.50698 * 119.99935 * 179.97438 * 15 14 2 18 18 C 1.53778 * 113.61154 * 180.02562 * 17 15 14 19 19 C 1.53787 * 87.08035 * 139.98353 * 18 17 15 20 20 C 1.52992 * 113.61596 * 220.01776 * 19 18 17 21 21 C 1.53778 * 113.61544 * 277.50052 * 17 15 14 22 22 H 1.08999 * 109.47147 * 300.00131 * 1 2 3 23 23 H 1.08997 * 109.46965 * 59.99775 * 1 2 3 24 24 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47177 * 294.99474 * 4 2 1 26 26 H 1.08999 * 109.47820 * 54.99536 * 4 2 1 27 27 H 0.97003 * 119.99332 * 359.97438 * 5 4 2 28 28 H 0.97002 * 119.99278 * 180.02562 * 9 8 6 29 29 H 0.96998 * 119.99607 * 264.99976 * 14 2 1 30 30 H 1.09004 * 112.90161 * 48.75364 * 17 15 14 31 31 H 1.08998 * 113.61879 * 25.43835 * 18 17 15 32 32 H 1.08999 * 113.61887 * 254.52942 * 18 17 15 33 33 H 1.09004 * 113.61202 * 89.11582 * 19 18 17 34 34 H 1.09008 * 109.47336 * 60.00442 * 20 19 18 35 35 H 1.09003 * 109.47337 * 179.97438 * 20 19 18 36 36 H 1.08993 * 109.47460 * 299.99983 * 20 19 18 37 37 H 1.08993 * 113.61229 * 105.47308 * 21 17 15 38 38 H 1.09000 * 113.61263 * 334.56958 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1906 6 6 4.1839 -1.4380 2.2071 7 1 3.6467 -1.8433 3.0521 8 6 5.5673 -1.5381 2.1513 9 7 6.2244 -2.1264 3.1282 10 14 6.4961 -0.8379 0.6897 11 1 6.8578 0.5761 0.9644 12 1 7.7317 -1.6297 0.4629 13 1 5.6373 -0.9030 -0.5200 14 7 2.0183 -0.6907 -1.1962 15 6 2.1470 -0.0183 -2.3572 16 8 1.8590 1.1586 -2.4115 17 6 2.6498 -0.7286 -3.5875 18 6 2.7398 0.1763 -4.8276 19 6 4.0609 -0.5389 -5.1565 20 6 5.1495 0.3970 -5.6853 21 6 4.1824 -0.8371 -3.6531 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.7517 -0.1583 2.1369 26 1 1.6053 -1.7198 1.2952 27 1 3.9823 -0.4628 0.4316 28 1 7.1912 -2.1960 3.0893 29 1 2.2490 -1.6318 -1.1526 30 1 2.1369 -1.6726 -3.7717 31 1 2.8629 1.2328 -4.5893 32 1 1.9517 -0.0047 -5.5584 33 1 3.9335 -1.4309 -5.7699 34 1 5.3694 1.1582 -4.9366 35 1 6.0520 -0.1771 -5.8950 36 1 4.8029 0.8770 -6.6005 37 1 4.5590 -1.8364 -3.4355 38 1 4.6996 -0.0575 -3.0937 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716433496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:16 Heat of formation + Delta-G solvation = -41.732994 kcal Electronic energy + Delta-G solvation = -17724.638010 eV Core-core repulsion = 14987.607074 eV Total energy + Delta-G solvation = -2737.030937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41661 -39.19348 -37.60566 -35.51151 -33.36174 -32.06178 -30.64032 -27.65828 -26.61749 -25.65069 -24.06399 -22.22964 -21.31768 -20.30772 -19.75745 -18.13888 -17.28025 -16.76767 -16.53375 -15.87333 -15.76276 -15.25203 -14.85169 -14.42622 -14.20156 -14.06654 -13.81702 -13.68974 -13.47732 -13.27485 -13.07879 -12.92072 -12.61540 -12.23678 -12.19237 -11.91147 -11.78541 -11.74373 -11.46418 -11.13609 -11.06656 -10.63753 -10.07662 -9.34237 -8.05502 -5.38919 1.33105 1.36931 1.43411 1.62483 2.25140 2.44348 3.26723 3.48705 3.54377 3.60896 3.76871 3.80775 3.90661 4.20122 4.24931 4.42114 4.48425 4.62424 4.76971 4.78301 4.81875 4.83654 4.87527 4.90838 4.91503 5.09296 5.09553 5.18571 5.28021 5.35247 5.53538 5.61469 5.73495 6.18042 6.58913 7.04033 7.26608 7.79490 7.98086 9.15689 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.008378 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.487240 B = 3341.199847 C = 4617.742372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.135 3.865 3 H 0.063 0.937 4 C 0.148 3.852 5 N -0.757 5.757 6 C -0.232 4.232 7 H 0.063 0.937 8 C -0.058 4.058 9 N -0.980 5.980 10 Si 0.947 3.053 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.249 1.249 14 N -0.712 5.712 15 C 0.517 3.483 16 O -0.585 6.585 17 C -0.135 4.135 18 C -0.112 4.112 19 C -0.102 4.102 20 C -0.144 4.144 21 C -0.130 4.130 22 H 0.078 0.922 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.364 0.636 28 H 0.258 0.742 29 H 0.410 0.590 30 H 0.142 0.858 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.893 1.373 -18.436 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.081 0.919 4 C 0.022 3.978 5 N -0.403 5.403 6 C -0.363 4.363 7 H 0.081 0.919 8 C -0.250 4.250 9 N -0.631 5.631 10 Si 0.775 3.225 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.174 1.174 14 N -0.363 5.363 15 C 0.305 3.695 16 O -0.466 6.466 17 C -0.156 4.156 18 C -0.150 4.150 19 C -0.120 4.120 20 C -0.202 4.202 21 C -0.168 4.168 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.197 0.803 28 H 0.067 0.933 29 H 0.246 0.754 30 H 0.159 0.841 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.104 2.092 -18.248 20.500 hybrid contribution 1.090 0.051 0.041 1.092 sum -8.013 2.143 -18.207 20.008 Atomic orbital electron populations 1.21987 0.92626 1.03193 1.02637 1.21139 0.95626 0.96277 0.83960 0.91869 1.21125 0.82828 0.98566 0.95321 1.42694 1.03206 1.70952 1.23418 1.19045 0.90043 1.28230 0.98993 0.91934 1.25412 0.97269 1.01746 1.00590 1.69865 1.07483 1.50742 1.34975 0.85528 0.78517 0.77486 0.80964 1.21658 1.21843 1.17374 1.46122 1.66271 1.14721 1.09211 1.21108 0.76129 0.86912 0.85386 1.90634 1.52276 1.17771 1.85899 1.22885 0.98268 1.01867 0.92611 1.22862 0.98421 0.98552 0.95148 1.22477 0.95029 0.99837 0.94643 1.21736 0.98444 0.98930 1.01059 1.23003 0.93145 1.02595 0.98058 0.90282 0.92861 0.90821 0.93956 0.93656 0.80286 0.93316 0.75371 0.84052 0.91179 0.89364 0.86540 0.94173 0.91746 0.91256 0.89734 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.48 71.98 0.68 -2.86 16 2 C 0.14 4.16 2.73 44.99 0.12 4.29 16 3 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 4 C 0.15 5.32 5.82 86.38 0.50 5.82 16 5 N -0.76 -34.57 5.24 -343.44 -1.80 -36.37 16 6 C -0.23 -13.01 10.47 84.04 0.88 -12.13 16 7 H 0.06 3.80 8.06 -2.90 -0.02 3.78 16 8 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 9 N -0.98 -62.31 13.97 21.65 0.30 -62.01 16 10 Si 0.95 45.66 27.74 68.60 1.90 47.56 16 11 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 13 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 14 N -0.71 -20.55 4.52 -442.52 -2.00 -22.55 16 15 C 0.52 15.44 7.32 87.66 0.64 16.08 16 16 O -0.59 -21.72 15.56 -3.04 -0.05 -21.76 16 17 C -0.14 -2.98 4.15 -11.02 -0.05 -3.02 16 18 C -0.11 -2.30 6.97 31.12 0.22 -2.08 16 19 C -0.10 -1.79 4.36 -10.28 -0.04 -1.84 16 20 C -0.14 -2.53 9.71 71.98 0.70 -1.83 16 21 C -0.13 -2.96 7.18 31.11 0.22 -2.74 16 22 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.36 16.43 5.20 -92.71 -0.48 15.95 16 28 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.41 10.76 8.60 -92.71 -0.80 9.96 16 30 H 0.14 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.07 1.81 7.39 -2.39 -0.02 1.79 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 0.83 7.94 -2.38 -0.02 0.81 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.67 7.91 -2.39 -0.02 1.65 16 Total: -1.00 -70.07 312.00 2.41 -67.66 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.30 Total: 30.73 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 4.35 Total: -3.27 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -3.50 Total: -120.92 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.76 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Total: -70.07 2.41 -67.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716433496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.931 kcal (2) G-P(sol) polarization free energy of solvation -70.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds