Wall clock time and date at job start Mon Mar 30 2020 17:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47489 * 2 1 4 4 H 1.09000 * 109.46915 * 55.00693 * 3 2 1 5 5 C 1.52995 * 109.47551 * 295.00608 * 3 2 1 6 6 C 1.50703 * 109.47070 * 175.00001 * 3 2 1 7 7 O 1.21283 * 119.99963 * 7.36106 * 6 3 2 8 8 N 1.34777 * 119.99760 * 187.36070 * 6 3 2 9 9 C 1.46497 * 119.99750 * 184.54987 * 8 6 3 10 10 C 1.53001 * 109.47294 * 184.82707 * 9 8 6 11 11 N 1.46508 * 115.54619 * 85.07911 * 10 9 8 12 12 C 1.36934 * 119.99512 * 65.24187 * 11 10 9 13 13 H 1.08001 * 120.00278 * 355.59387 * 12 11 10 14 14 C 1.38819 * 119.99551 * 175.58604 * 12 11 10 15 15 N 1.31614 * 119.99847 * 5.09306 * 14 12 11 16 16 Si 1.86806 * 119.99677 * 185.08894 * 14 12 11 17 17 H 1.48504 * 109.46955 * 55.00477 * 16 14 12 18 18 H 1.48499 * 109.46889 * 175.00197 * 16 14 12 19 19 H 1.48500 * 109.47040 * 294.99942 * 16 14 12 20 20 C 1.52998 * 117.50502 * 230.75233 * 10 9 8 21 21 C 1.52998 * 117.49873 * 299.41546 * 10 9 8 22 22 H 1.09005 * 109.46120 * 299.99895 * 1 2 3 23 23 H 1.09002 * 109.47095 * 59.99406 * 1 2 3 24 24 H 1.08994 * 109.47217 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46749 * 240.00479 * 2 1 3 26 26 H 1.09002 * 109.47095 * 120.00594 * 2 1 3 27 27 H 1.09000 * 109.47425 * 185.39750 * 5 3 2 28 28 H 1.09006 * 109.46753 * 305.39162 * 5 3 2 29 29 H 1.09000 * 109.47285 * 65.38927 * 5 3 2 30 30 H 0.96994 * 120.00282 * 4.54561 * 8 6 3 31 31 H 1.09008 * 109.47006 * 64.83422 * 9 8 6 32 32 H 1.08992 * 109.47512 * 304.83269 * 9 8 6 33 33 H 0.96998 * 120.00130 * 245.51867 * 11 10 9 34 34 H 0.97000 * 119.99745 * 180.02562 * 15 14 12 35 35 H 1.08997 * 117.49816 * 215.00715 * 20 10 9 36 36 H 1.09005 * 117.49283 * 0.02562 * 20 10 9 37 37 H 1.08989 * 117.50356 * 359.97005 * 21 10 9 38 38 H 1.09005 * 117.49940 * 144.97014 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6056 1.9815 0.8419 5 6 1.6353 2.1266 -1.3072 6 6 3.5420 1.4442 0.1238 7 8 4.1561 0.3997 0.0699 8 7 4.2028 2.6064 0.2945 9 6 5.6676 2.6200 0.3150 10 6 6.1600 4.0314 0.6410 11 7 6.2407 4.3589 2.0667 12 6 7.1291 3.6973 2.8718 13 1 7.7194 2.8859 2.4722 14 6 7.2710 4.0696 4.2016 15 7 6.4823 4.9896 4.7151 16 14 8.5813 3.2646 5.2621 17 1 9.9072 3.4159 4.6106 18 1 8.6079 3.9167 6.5960 19 1 8.2704 1.8214 5.4228 20 6 7.2124 4.6441 -0.2853 21 6 5.7700 5.1554 -0.3210 22 1 -0.3632 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0793 3.1212 -1.3494 28 1 1.9889 1.5349 -2.1516 29 1 0.5495 2.2111 -1.3520 30 1 3.7085 3.4338 0.4038 31 1 6.0474 2.3192 -0.6615 32 1 6.0268 1.9255 1.0743 33 1 5.6621 5.0415 2.4411 34 1 6.5817 5.2501 5.6442 35 1 7.9649 5.2907 0.1661 36 1 7.5537 4.0417 -1.1272 37 1 5.1631 4.8894 -1.1863 38 1 5.5732 6.1385 0.1069 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723492883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:31 Heat of formation + Delta-G solvation = -20.408155 kcal Electronic energy + Delta-G solvation = -17444.559013 eV Core-core repulsion = 14708.452791 eV Total energy + Delta-G solvation = -2736.106222 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.66210 -37.59783 -35.30597 -33.73340 -32.98714 -29.91614 -29.68151 -26.63293 -24.98539 -23.88583 -22.07469 -21.33048 -19.66395 -18.92559 -17.15707 -16.87730 -15.69842 -15.43317 -15.17051 -14.47522 -14.22535 -13.73191 -13.58800 -13.38115 -13.08517 -12.73694 -12.26413 -12.08407 -11.91658 -11.64900 -11.54110 -10.98576 -10.96330 -10.89451 -10.83190 -10.70996 -10.30320 -10.25314 -9.70388 -9.56163 -9.24657 -8.85382 -8.56571 -7.06728 -5.83491 -3.13171 2.99071 3.43275 3.47450 3.48606 3.51323 4.41968 4.59863 4.72835 4.89434 4.92550 5.23194 5.27463 5.29612 5.35470 5.42509 5.47957 5.56371 5.64032 5.75862 5.80910 5.82841 5.89022 6.01123 6.06938 6.21418 6.26928 6.33535 6.42119 6.56547 6.69804 6.77459 6.90344 7.69755 7.92384 8.34885 8.60406 9.46276 9.99724 10.34960 11.38568 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.005864 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.620194 B = 4773.840849 C = 5375.516403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C -0.112 4.112 4 H 0.094 0.906 5 C -0.142 4.142 6 C 0.512 3.488 7 O -0.550 6.550 8 N -0.713 5.713 9 C 0.145 3.855 10 C 0.129 3.871 11 N -0.689 5.689 12 C -0.239 4.239 13 H 0.072 0.928 14 C -0.009 4.009 15 N -0.932 5.932 16 Si 0.908 3.092 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.187 4.187 21 C -0.187 4.187 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.399 0.601 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.387 0.613 34 H 0.257 0.743 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.234 -3.088 -11.862 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.134 4.134 4 H 0.112 0.888 5 C -0.199 4.199 6 C 0.298 3.702 7 O -0.428 6.428 8 N -0.363 5.363 9 C 0.020 3.980 10 C 0.035 3.965 11 N -0.328 5.328 12 C -0.370 4.370 13 H 0.090 0.910 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.738 3.262 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.228 4.228 21 C -0.225 4.225 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.233 0.767 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.222 0.778 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.639 -3.917 -11.770 15.710 hybrid contribution 0.383 0.338 0.918 1.050 sum -9.256 -3.578 -10.853 14.706 Atomic orbital electron populations 1.21839 0.95736 1.01650 1.01778 1.21330 0.95043 0.94461 1.03410 1.21339 0.92513 0.99140 1.00379 0.88789 1.21785 1.01851 1.00380 0.95895 1.20605 0.89778 0.83684 0.76156 1.90667 1.69800 1.31591 1.50707 1.45954 1.07886 1.09531 1.72892 1.21269 0.78729 0.97539 1.00488 1.20173 1.01178 0.90358 0.84809 1.41774 1.45226 1.45527 1.00281 1.19129 1.14500 1.12050 0.91321 0.90994 1.24749 0.99559 0.99118 0.97066 1.69655 1.39948 1.34253 1.14091 0.86259 0.81682 0.78646 0.79610 1.21033 1.21663 1.21207 1.23373 0.92339 1.04674 1.02387 1.23073 0.99062 0.99035 1.01319 0.92705 0.92584 0.92677 0.91358 0.91292 0.92120 0.92207 0.91507 0.76748 0.92672 0.90226 0.77764 0.93369 0.88613 0.89956 0.89498 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.10 -1.23 4.70 -26.73 -0.13 -1.35 16 3 C -0.11 -1.35 2.72 -91.77 -0.25 -1.59 16 4 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 5 C -0.14 -1.34 8.79 37.16 0.33 -1.01 16 6 C 0.51 8.37 7.07 -10.98 -0.08 8.29 16 7 O -0.55 -11.14 15.99 5.56 0.09 -11.05 16 8 N -0.71 -11.46 5.43 -60.29 -0.33 -11.79 16 9 C 0.15 2.70 5.79 -4.04 -0.02 2.68 16 10 C 0.13 2.48 2.22 -131.82 -0.29 2.18 16 11 N -0.69 -16.66 5.50 -47.23 -0.26 -16.92 16 12 C -0.24 -6.54 9.52 -15.06 -0.14 -6.68 16 13 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 14 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 15 N -0.93 -27.64 13.07 55.49 0.73 -26.91 16 16 Si 0.91 22.44 29.56 -169.99 -5.02 17.42 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 C -0.19 -3.23 10.11 -26.69 -0.27 -3.50 16 21 C -0.19 -2.92 9.84 -26.69 -0.26 -3.19 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.44 6.69 -51.93 -0.35 0.09 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 27 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.51 6.83 -51.93 -0.35 0.16 16 30 H 0.40 5.63 8.25 -40.82 -0.34 5.30 16 31 H 0.06 0.96 7.90 -51.92 -0.41 0.55 16 32 H 0.08 1.77 7.69 -51.93 -0.40 1.37 16 33 H 0.39 9.94 8.04 -40.82 -0.33 9.61 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 36 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 317.69 15.07 4.79 4.79 Total: -1.00 -31.17 317.69 -7.23 -38.40 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.36 Total: 11.59 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.85 Total: -5.53 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.14 Total: -55.62 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.17 -7.23 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723492883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.987 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds