Wall clock time and date at job start Mon Mar 30 2020 17:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47159 * 2 1 4 4 H 1.08998 * 109.47489 * 305.00311 * 3 2 1 5 5 C 1.53003 * 109.46697 * 65.00345 * 3 2 1 6 6 C 1.50700 * 109.47166 * 184.99768 * 3 2 1 7 7 O 1.21286 * 119.99664 * 0.02562 * 6 3 2 8 8 N 1.34769 * 120.00296 * 180.02562 * 6 3 2 9 9 C 1.46493 * 120.00398 * 180.02562 * 8 6 3 10 10 H 1.09002 * 112.85086 * 313.74056 * 9 8 6 11 11 C 1.53790 * 113.61565 * 84.93492 * 9 8 6 12 12 C 1.53783 * 87.07814 * 89.20088 * 11 9 8 13 13 H 1.09000 * 113.60786 * 140.06663 * 12 11 9 14 14 N 1.46498 * 113.61566 * 270.88292 * 12 11 9 15 15 C 1.36935 * 119.99828 * 202.43099 * 14 12 11 16 16 H 1.07997 * 120.00197 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99726 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00248 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99926 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47318 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46809 * 299.99468 * 19 17 15 22 22 H 1.48500 * 109.47500 * 59.99429 * 19 17 15 23 23 C 1.53779 * 113.69523 * 182.47130 * 9 8 6 24 24 H 1.09005 * 109.47248 * 59.99743 * 1 2 3 25 25 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47047 * 299.99956 * 1 2 3 27 27 H 1.09000 * 109.47047 * 240.00044 * 2 1 3 28 28 H 1.09005 * 109.47248 * 120.00257 * 2 1 3 29 29 H 1.08998 * 109.47179 * 59.99776 * 5 3 2 30 30 H 1.09000 * 109.46836 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.47156 * 299.99376 * 5 3 2 32 32 H 0.97004 * 119.99954 * 0.02562 * 8 6 3 33 33 H 1.09001 * 113.61144 * 334.65245 * 11 9 8 34 34 H 1.09001 * 113.61517 * 203.74964 * 11 9 8 35 35 H 0.97004 * 119.99978 * 22.43423 * 14 12 11 36 36 H 0.97004 * 119.99897 * 0.02562 * 18 17 15 37 37 H 1.09005 * 113.61930 * 156.32547 * 23 9 8 38 38 H 1.09006 * 113.61492 * 25.41970 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1449 0.3951 -0.2045 8 7 4.2150 2.6117 -0.1447 9 6 5.6749 2.6135 -0.2656 10 1 6.1558 1.8983 0.4018 11 6 6.1729 2.5316 -1.7183 12 6 6.1179 4.0683 -1.7408 13 1 6.9557 4.5274 -2.2656 14 7 4.8208 4.6030 -2.1621 15 6 4.7354 5.8722 -2.6692 16 1 5.6245 6.4787 -2.7589 17 6 3.5062 6.3790 -3.0679 18 7 2.4228 5.6397 -2.9590 19 14 3.3898 8.1100 -3.7603 20 1 1.9776 8.4103 -4.1079 21 1 3.8664 9.0826 -2.7442 22 1 4.2329 8.2137 -4.9784 23 6 6.2975 4.0187 -0.2143 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.0699 1.5873 2.1492 30 1 1.9990 3.1540 1.3077 31 1 0.5489 2.1252 1.3970 32 1 3.7327 3.4508 -0.0797 33 1 5.4629 2.0593 -2.3973 34 1 7.1816 2.1293 -1.8121 35 1 4.0223 4.0581 -2.0818 36 1 2.4832 4.7406 -2.5998 37 1 7.3403 4.0230 0.1030 38 1 5.6882 4.7470 0.3209 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731470734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:34 Heat of formation + Delta-G solvation = -41.692349 kcal Electronic energy + Delta-G solvation = -17949.390052 eV Core-core repulsion = 15212.360878 eV Total energy + Delta-G solvation = -2737.029174 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.45552 -39.62309 -36.39290 -35.83980 -34.20204 -31.60466 -30.46419 -26.75510 -26.45461 -25.92685 -24.60557 -22.59081 -20.83386 -20.29924 -19.49400 -18.08956 -17.28910 -16.86212 -16.47653 -16.04434 -15.65549 -15.47748 -15.04533 -14.90437 -14.44151 -13.64312 -13.61986 -13.30144 -13.18474 -12.96920 -12.65198 -12.59168 -12.54863 -12.38492 -11.95848 -11.87231 -11.76380 -11.63594 -11.45899 -11.09049 -10.90875 -10.73308 -9.99803 -9.12265 -8.37683 -5.32744 1.58151 1.60830 1.69498 1.85932 2.17853 2.71290 3.38764 3.51649 3.65591 3.69892 3.79799 3.86140 3.96566 4.15502 4.26218 4.35988 4.48436 4.58240 4.68276 4.74653 4.80400 4.87762 4.91881 4.95962 4.99957 5.03914 5.12756 5.15818 5.27558 5.31690 5.45465 5.56801 5.69682 6.47820 6.51806 7.09274 7.18240 7.99553 8.11667 9.12960 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020910 B = 0.007345 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.747368 B = 3811.217304 C = 4778.886449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.112 4.112 4 H 0.093 0.907 5 C -0.138 4.138 6 C 0.514 3.486 7 O -0.580 6.580 8 N -0.704 5.704 9 C 0.126 3.874 10 H 0.090 0.910 11 C -0.159 4.159 12 C 0.150 3.850 13 H 0.063 0.937 14 N -0.730 5.730 15 C -0.334 4.334 16 H 0.068 0.932 17 C -0.100 4.100 18 N -0.970 5.970 19 Si 1.127 2.873 20 H -0.294 1.294 21 H -0.277 1.277 22 H -0.282 1.282 23 C -0.155 4.155 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.405 0.595 33 H 0.038 0.962 34 H 0.114 0.886 35 H 0.363 0.637 36 H 0.243 0.757 37 H 0.119 0.881 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -6.416 8.677 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.134 4.134 4 H 0.111 0.889 5 C -0.195 4.195 6 C 0.302 3.698 7 O -0.461 6.461 8 N -0.355 5.355 9 C 0.021 3.979 10 H 0.108 0.892 11 C -0.198 4.198 12 C 0.040 3.960 13 H 0.081 0.919 14 N -0.371 5.371 15 C -0.465 4.465 16 H 0.086 0.914 17 C -0.292 4.292 18 N -0.617 5.617 19 Si 0.952 3.048 20 H -0.220 1.220 21 H -0.203 1.203 22 H -0.209 1.209 23 C -0.196 4.196 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.241 0.759 33 H 0.057 0.943 34 H 0.132 0.868 35 H 0.196 0.804 36 H 0.053 0.947 37 H 0.137 0.863 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.412 -5.850 7.970 9.895 hybrid contribution 0.658 -1.035 0.348 1.275 sum 1.071 -6.885 8.318 10.851 Atomic orbital electron populations 1.21822 0.93540 1.02645 1.02585 1.21276 0.96953 0.93230 1.02166 1.21420 0.89847 1.00234 1.01860 0.88896 1.21788 1.03566 0.99784 0.94371 1.21214 0.91120 0.82988 0.74467 1.90617 1.71343 1.32434 1.51686 1.45937 1.07374 1.08885 1.73270 1.21782 0.80358 0.98849 0.96914 0.89198 1.23825 1.02067 0.97273 0.96676 1.21404 0.88154 0.92554 0.93933 0.91908 1.42376 1.04595 1.14443 1.75728 1.20412 0.96217 0.92274 1.37603 0.91412 1.27103 0.91337 1.09188 1.01527 1.71017 1.29773 1.10376 1.50562 0.82617 0.75337 0.70771 0.76037 1.22047 1.20286 1.20889 1.23955 1.01927 0.94328 0.99404 0.92863 0.91399 0.91056 0.93212 0.91636 0.91758 0.92559 0.89248 0.75927 0.94344 0.86782 0.80388 0.94656 0.86315 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.67 71.98 0.70 -2.28 16 2 C -0.10 -2.53 4.75 30.59 0.15 -2.38 16 3 C -0.11 -3.18 2.73 -11.54 -0.03 -3.21 16 4 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 5 C -0.14 -3.16 8.84 71.98 0.64 -2.52 16 6 C 0.51 17.79 7.15 87.66 0.63 18.41 16 7 O -0.58 -23.28 15.86 -3.05 -0.05 -23.33 16 8 N -0.70 -23.95 4.23 -440.04 -1.86 -25.81 16 9 C 0.13 4.11 3.99 45.52 0.18 4.29 16 10 H 0.09 2.78 8.05 -2.39 -0.02 2.76 16 11 C -0.16 -5.50 7.62 31.12 0.24 -5.26 16 12 C 0.15 5.80 4.55 45.52 0.21 6.01 16 13 H 0.06 2.43 8.11 -2.39 -0.02 2.41 16 14 N -0.73 -35.35 5.02 -320.45 -1.61 -36.96 16 15 C -0.33 -18.09 9.97 84.03 0.84 -17.25 16 16 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 17 C -0.10 -5.59 5.50 84.86 0.47 -5.12 16 18 N -0.97 -58.09 13.70 21.65 0.30 -57.79 16 19 Si 1.13 50.42 29.92 68.60 2.05 52.47 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 21 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 23 C -0.16 -4.89 7.58 31.12 0.24 -4.65 16 24 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.22 6.56 -2.39 -0.02 1.21 16 27 H 0.05 1.45 7.95 -2.39 -0.02 1.43 16 28 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.35 7.56 -2.39 -0.02 1.33 16 31 H 0.09 1.70 6.57 -2.39 -0.02 1.68 16 32 H 0.40 14.20 7.25 -92.71 -0.67 13.53 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.36 18.19 5.20 -92.71 -0.48 17.71 16 36 H 0.24 14.45 6.77 -92.71 -0.63 13.82 16 37 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 38 H 0.06 2.09 8.13 -2.38 -0.02 2.07 16 Total: -1.00 -66.06 307.53 3.11 -62.95 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: 0.03 Total: 42.43 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 4.24 Total: -13.96 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -3.17 Total: -120.56 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.33 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.47 kcal Total: -66.06 3.11 -62.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731470734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.262 kcal (2) G-P(sol) polarization free energy of solvation -66.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds