Wall clock time and date at job start Mon Mar 30 2020 17:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46982 * 2 1 4 4 H 1.09001 * 109.47288 * 55.00345 * 3 2 1 5 5 C 1.53004 * 109.47272 * 295.00207 * 3 2 1 6 6 C 1.50701 * 109.46958 * 175.00085 * 3 2 1 7 7 O 1.21282 * 120.00147 * 0.02562 * 6 3 2 8 8 N 1.34780 * 119.99683 * 179.97438 * 6 3 2 9 9 C 1.46500 * 119.99679 * 180.02562 * 8 6 3 10 10 H 1.09005 * 112.84939 * 314.57891 * 9 8 6 11 11 C 1.53787 * 113.61672 * 85.77344 * 9 8 6 12 12 C 1.53783 * 87.08079 * 89.19993 * 11 9 8 13 13 H 1.08996 * 113.61328 * 140.06784 * 12 11 9 14 14 N 1.46504 * 113.61315 * 270.88740 * 12 11 9 15 15 C 1.36938 * 119.99772 * 202.15626 * 14 12 11 16 16 H 1.07998 * 119.99983 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99887 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00039 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99995 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46977 * 60.00036 * 19 17 15 21 21 H 1.48495 * 109.46915 * 300.00107 * 19 17 15 22 22 H 1.48498 * 109.47016 * 180.02562 * 19 17 15 23 23 C 1.53777 * 87.07980 * 25.43376 * 12 11 9 24 24 H 1.08998 * 109.46977 * 59.99400 * 1 2 3 25 25 H 1.08998 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46703 * 299.99726 * 1 2 3 27 27 H 1.08998 * 109.47074 * 240.00448 * 2 1 3 28 28 H 1.08997 * 109.47640 * 120.00250 * 2 1 3 29 29 H 1.08995 * 109.47022 * 299.99823 * 5 3 2 30 30 H 1.09002 * 109.47001 * 60.00182 * 5 3 2 31 31 H 1.09006 * 109.46757 * 180.02562 * 5 3 2 32 32 H 0.96996 * 120.00137 * 0.02562 * 8 6 3 33 33 H 1.09004 * 113.60848 * 334.64998 * 11 9 8 34 34 H 1.08998 * 113.68974 * 203.76033 * 11 9 8 35 35 H 0.97001 * 120.00061 * 22.15512 * 14 12 11 36 36 H 0.97002 * 119.99866 * 0.02562 * 18 17 15 37 37 H 1.08998 * 113.61654 * 89.12048 * 23 12 11 38 38 H 1.09001 * 113.61633 * 220.01973 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1451 0.3951 0.2037 8 7 4.2149 2.6119 0.1448 9 6 5.6750 2.6136 0.2645 10 1 6.0375 1.9303 1.0326 11 6 6.4038 2.4694 -1.0820 12 6 6.3589 4.0034 -1.1811 13 1 7.2729 4.4419 -1.5815 14 7 5.1501 4.5142 -1.8323 15 6 5.1518 5.7616 -2.3972 16 1 6.0442 6.3690 -2.3624 17 6 4.0066 6.2455 -3.0147 18 7 2.9192 5.5051 -3.0576 19 14 4.0087 7.9474 -3.7847 20 1 5.0428 8.0079 -4.8487 21 1 4.3104 8.9616 -2.7429 22 1 2.6744 8.2257 -4.3741 23 6 6.2859 4.0219 0.3548 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0698 1.5876 -2.1491 30 1 0.5488 2.1253 -1.3968 31 1 1.9989 3.1542 -1.3074 32 1 3.7325 3.4509 0.0805 33 1 5.8128 1.9649 -1.8464 34 1 7.4128 2.0669 -0.9929 35 1 4.3485 3.9689 -1.8632 36 1 2.9180 4.6215 -2.6574 37 1 7.2626 4.0441 0.8382 38 1 5.5998 4.7709 0.7504 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731470735.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:37 Heat of formation + Delta-G solvation = -41.519131 kcal Electronic energy + Delta-G solvation = -18079.587160 eV Core-core repulsion = 15342.565497 eV Total energy + Delta-G solvation = -2737.021663 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.46162 -39.61081 -36.41806 -35.80533 -34.20397 -31.57645 -30.47453 -26.69817 -26.47658 -25.97201 -24.57204 -22.57217 -20.79946 -20.35389 -19.48322 -18.12542 -17.18155 -16.80311 -16.49734 -16.14428 -15.59596 -15.40351 -15.21848 -14.76939 -14.44351 -13.71465 -13.60687 -13.28655 -13.14757 -12.96900 -12.64951 -12.61313 -12.54016 -12.36680 -11.95159 -11.87204 -11.75382 -11.61442 -11.44702 -11.07437 -10.89466 -10.73688 -10.00056 -9.10034 -8.34122 -5.30175 1.57099 1.61604 1.70008 1.86545 2.18473 2.72236 3.40614 3.51732 3.64938 3.71517 3.77392 3.89916 3.95810 4.15814 4.25949 4.36242 4.46855 4.58695 4.68067 4.74520 4.80570 4.88147 4.89285 4.96099 4.99615 5.10708 5.12950 5.16741 5.27492 5.33504 5.47011 5.57720 5.70821 6.48665 6.55848 7.13330 7.18019 8.01687 8.14189 9.16775 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.007697 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.845011 B = 3637.003600 C = 4725.404334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.104 4.104 4 H 0.115 0.885 5 C -0.138 4.138 6 C 0.513 3.487 7 O -0.580 6.580 8 N -0.705 5.705 9 C 0.126 3.874 10 H 0.091 0.909 11 C -0.158 4.158 12 C 0.149 3.851 13 H 0.062 0.938 14 N -0.730 5.730 15 C -0.337 4.337 16 H 0.066 0.934 17 C -0.098 4.098 18 N -0.969 5.969 19 Si 1.126 2.874 20 H -0.284 1.284 21 H -0.278 1.278 22 H -0.294 1.294 23 C -0.156 4.156 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.404 0.596 33 H 0.038 0.962 34 H 0.114 0.886 35 H 0.364 0.636 36 H 0.248 0.752 37 H 0.118 0.882 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 -6.172 8.041 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C -0.125 4.125 4 H 0.133 0.867 5 C -0.195 4.195 6 C 0.301 3.699 7 O -0.460 6.460 8 N -0.356 5.356 9 C 0.021 3.979 10 H 0.109 0.891 11 C -0.198 4.198 12 C 0.039 3.961 13 H 0.080 0.920 14 N -0.372 5.372 15 C -0.468 4.468 16 H 0.084 0.916 17 C -0.290 4.290 18 N -0.616 5.616 19 Si 0.952 3.048 20 H -0.210 1.210 21 H -0.205 1.205 22 H -0.220 1.220 23 C -0.197 4.197 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.241 0.759 33 H 0.057 0.943 34 H 0.132 0.868 35 H 0.198 0.802 36 H 0.059 0.941 37 H 0.137 0.863 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.985 -5.640 7.263 9.248 hybrid contribution 0.617 -0.960 0.543 1.263 sum -0.368 -6.599 7.805 10.228 Atomic orbital electron populations 1.21818 0.93408 1.02652 1.02677 1.21284 0.97054 0.93181 1.02162 1.21405 0.89794 1.00191 1.01155 0.86662 1.21762 1.03346 0.99452 0.94972 1.21254 0.91215 0.82974 0.74453 1.90618 1.71410 1.32362 1.51611 1.45956 1.07277 1.08943 1.73381 1.21787 0.79860 0.98822 0.97479 0.89123 1.23822 1.01578 0.97255 0.97175 1.21402 0.89764 0.92703 0.92213 0.91962 1.42380 1.10753 1.16804 1.67261 1.20395 0.99842 0.94006 1.32560 0.91569 1.27046 0.92146 1.08807 1.00973 1.71006 1.29485 1.11714 1.49424 0.82623 0.75315 0.71112 0.75762 1.21033 1.20457 1.22021 1.23958 1.01846 0.94374 0.99505 0.92108 0.91479 0.91569 0.93014 0.91886 0.93861 0.89190 0.93475 0.75948 0.94340 0.86794 0.80224 0.94095 0.86340 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.67 71.98 0.70 -2.15 16 2 C -0.10 -2.50 4.75 30.59 0.15 -2.35 16 3 C -0.10 -2.90 2.72 -11.54 -0.03 -2.94 16 4 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 5 C -0.14 -4.18 8.85 71.98 0.64 -3.54 16 6 C 0.51 17.64 7.15 87.66 0.63 18.26 16 7 O -0.58 -23.11 15.85 -3.03 -0.05 -23.16 16 8 N -0.70 -23.99 4.25 -440.02 -1.87 -25.86 16 9 C 0.13 4.10 4.00 45.52 0.18 4.29 16 10 H 0.09 2.81 8.03 -2.38 -0.02 2.79 16 11 C -0.16 -5.50 7.62 31.12 0.24 -5.26 16 12 C 0.15 5.79 4.55 45.52 0.21 6.00 16 13 H 0.06 2.42 8.12 -2.39 -0.02 2.40 16 14 N -0.73 -35.22 5.01 -320.45 -1.60 -36.83 16 15 C -0.34 -18.19 9.98 84.03 0.84 -17.36 16 16 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 17 C -0.10 -5.42 5.50 84.86 0.47 -4.95 16 18 N -0.97 -57.11 13.70 21.65 0.30 -56.81 16 19 Si 1.13 50.30 29.92 68.60 2.05 52.35 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 23 C -0.16 -4.92 7.58 31.12 0.24 -4.69 16 24 H 0.06 1.16 6.56 -2.39 -0.02 1.14 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.64 7.95 -2.39 -0.02 1.62 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 2.30 6.56 -2.39 -0.02 2.29 16 31 H 0.05 1.67 6.79 -2.38 -0.02 1.65 16 32 H 0.40 14.24 7.21 -92.71 -0.67 13.58 16 33 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.36 18.05 5.19 -92.71 -0.48 17.57 16 36 H 0.25 14.34 6.00 -92.71 -0.56 13.78 16 37 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -65.33 305.93 3.18 -62.15 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: 0.11 Total: 42.85 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.24 Total: -14.68 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -3.18 Total: -119.51 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.05 Total: 52.35 kcal Total: -65.33 3.18 -62.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731470735.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.628 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds