Wall clock time and date at job start Mon Mar 30 2020 17:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46804 * 2 1 4 4 C 1.53001 * 109.46804 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.46900 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99943 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00165 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00271 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.77850 * 323.21294 * 8 7 5 10 10 C 1.55156 * 110.72267 * 199.97725 * 8 7 5 11 11 C 1.55122 * 101.48720 * 205.97088 * 10 8 7 12 12 N 1.47425 * 104.72620 * 37.29027 * 11 10 8 13 13 C 1.36934 * 125.64935 * 155.81410 * 12 11 10 14 14 H 1.08002 * 119.99686 * 189.80166 * 13 12 11 15 15 C 1.38804 * 120.00070 * 9.53495 * 13 12 11 16 16 N 1.31620 * 120.00406 * 9.87362 * 15 13 12 17 17 Si 1.86799 * 120.00161 * 189.87496 * 15 13 12 18 18 H 1.48502 * 109.47270 * 94.12759 * 17 15 13 19 19 H 1.48496 * 109.47727 * 214.12668 * 17 15 13 20 20 H 1.48500 * 109.47334 * 334.13189 * 17 15 13 21 21 C 1.47020 * 108.69873 * 335.55721 * 12 11 10 22 22 H 1.09003 * 109.46845 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47554 * 299.99985 * 1 2 3 24 24 H 1.08996 * 109.47232 * 60.00069 * 1 2 3 25 25 H 1.08994 * 109.47489 * 239.99630 * 2 1 3 26 26 H 1.09007 * 109.47238 * 119.99451 * 2 1 3 27 27 H 1.08994 * 109.47399 * 59.99575 * 3 2 1 28 28 H 1.09007 * 109.46775 * 299.99735 * 3 2 1 29 29 H 1.09005 * 109.47076 * 59.99900 * 4 3 2 30 30 H 1.08996 * 109.47232 * 299.99931 * 4 3 2 31 31 H 0.97007 * 119.99797 * 359.97438 * 7 5 4 32 32 H 1.09005 * 111.00151 * 324.20783 * 10 8 7 33 33 H 1.09004 * 111.00548 * 88.01974 * 10 8 7 34 34 H 1.09001 * 110.49915 * 278.45202 * 11 10 8 35 35 H 1.08996 * 110.34738 * 156.05693 * 11 10 8 36 36 H 0.97000 * 120.00544 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.88231 * 120.70045 * 21 12 11 38 38 H 1.09004 * 109.88149 * 241.86211 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0722 2.8634 -0.0013 6 8 3.2841 3.7853 -0.0017 7 7 5.3973 3.1098 -0.0024 8 6 5.8856 4.4910 -0.0036 9 1 5.2445 5.1272 -0.6138 10 6 7.3540 4.5537 -0.5006 11 6 7.8590 5.8475 0.1904 12 7 7.2118 5.8419 1.5150 13 6 7.6743 6.4852 2.6319 14 1 7.2188 6.2945 3.5924 15 6 8.7320 7.3783 2.5305 16 7 9.1636 7.7556 1.3457 17 14 9.5432 8.0448 4.0755 18 1 10.7217 7.2079 4.4163 19 1 9.9811 9.4441 3.8407 20 1 8.5717 8.0119 5.1982 21 6 5.9845 5.0364 1.4366 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 3.9329 0.9288 -0.8909 30 1 3.9337 0.9286 0.8891 31 1 6.0277 2.3725 -0.0025 32 1 7.9173 3.6826 -0.1658 33 1 7.3956 4.6498 -1.5856 34 1 7.5544 6.7270 -0.3768 35 1 8.9433 5.8212 0.2979 36 1 9.9030 8.3794 1.2748 37 1 6.0386 4.2085 2.1435 38 1 5.1176 5.6592 1.6575 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752378124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:01 Heat of formation + Delta-G solvation = -35.112993 kcal Electronic energy + Delta-G solvation = -17152.228217 eV Core-core repulsion = 14415.484345 eV Total energy + Delta-G solvation = -2736.743872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.64670 -37.30545 -35.41338 -33.94881 -31.94640 -30.57964 -29.09173 -27.16167 -24.99903 -23.99002 -21.36538 -20.60451 -20.21651 -19.67162 -17.09334 -16.56738 -16.05796 -15.77860 -14.70127 -14.64632 -14.23031 -13.85912 -13.82316 -13.07399 -12.85679 -12.46370 -12.36632 -11.99098 -11.67464 -11.47167 -11.34742 -11.14679 -11.03380 -10.86152 -10.79724 -10.71875 -10.49331 -10.08069 -9.87421 -9.70108 -9.52268 -8.70606 -8.58072 -6.80033 -5.74243 -3.06754 2.86527 3.39494 3.42437 3.46657 3.48818 4.50769 4.70297 4.75574 4.79436 5.09927 5.16274 5.32310 5.36551 5.42896 5.50855 5.56799 5.66289 5.69300 5.75791 5.80581 5.83075 5.96632 6.11793 6.19460 6.25335 6.38081 6.46323 6.57228 6.79383 7.04147 7.45933 7.55607 7.75110 7.80633 8.25747 8.48489 9.19898 9.81468 10.48595 11.39027 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.051236 B = 0.004148 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.361590 B = 6748.364656 C = 7054.503287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.141 4.141 5 C 0.507 3.493 6 O -0.543 6.543 7 N -0.719 5.719 8 C 0.131 3.869 9 H 0.090 0.910 10 C -0.151 4.151 11 C 0.174 3.826 12 N -0.603 5.603 13 C -0.228 4.228 14 H 0.076 0.924 15 C -0.008 4.008 16 N -0.920 5.920 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.129 3.871 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.398 0.602 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.253 0.747 37 H 0.024 0.976 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -15.656 -4.959 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.181 4.181 5 C 0.293 3.707 6 O -0.420 6.420 7 N -0.370 5.370 8 C 0.027 3.973 9 H 0.108 0.892 10 C -0.190 4.190 11 C 0.049 3.951 12 N -0.330 5.330 13 C -0.356 4.356 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.567 5.567 17 Si 0.743 3.257 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.206 1.206 21 C 0.002 3.998 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.231 0.769 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.958 -14.815 -4.902 18.511 hybrid contribution 0.820 0.070 0.804 1.150 sum -9.138 -14.745 -4.098 17.825 Atomic orbital electron populations 1.21763 0.95824 1.01363 1.02064 1.21553 0.96045 0.96786 1.01863 1.21372 0.92925 0.96338 1.03687 1.21701 0.98015 0.94255 1.04114 1.20725 0.82454 0.91547 0.75925 1.90704 1.55278 1.46567 1.49410 1.46126 1.06838 1.09057 1.74977 1.22046 0.95543 0.81643 0.98110 0.89176 1.23345 0.94046 1.01808 0.99802 1.21444 0.98461 0.90579 0.84625 1.44461 1.21981 1.58306 1.08214 1.19051 1.12919 1.17648 0.86002 0.90591 1.24822 1.00191 0.98494 0.96935 1.69944 1.29321 1.36383 1.21042 0.86094 0.79470 0.77998 0.82174 1.21620 1.21725 1.20576 1.21606 0.90542 0.94348 0.93324 0.92922 0.92636 0.92686 0.92097 0.92031 0.91155 0.91267 0.89201 0.89076 0.76860 0.91686 0.91648 0.95221 0.90846 0.93677 0.95768 0.95539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.14 16 3 C -0.11 -1.08 4.50 -26.73 -0.12 -1.20 16 4 C -0.14 -1.40 5.70 -27.88 -0.16 -1.56 16 5 C 0.51 7.49 7.83 -10.98 -0.09 7.41 16 6 O -0.54 -10.39 15.71 5.55 0.09 -10.31 16 7 N -0.72 -10.41 5.13 -52.04 -0.27 -10.67 16 8 C 0.13 2.42 3.23 -66.10 -0.21 2.21 16 9 H 0.09 1.79 7.70 -51.93 -0.40 1.39 16 10 C -0.15 -2.73 6.71 -24.47 -0.16 -2.89 16 11 C 0.17 4.21 5.44 -2.41 -0.01 4.19 16 12 N -0.60 -15.85 3.39 -169.94 -0.58 -16.43 16 13 C -0.23 -6.52 10.24 -15.06 -0.15 -6.67 16 14 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 15 C -0.01 -0.23 5.40 -17.43 -0.09 -0.32 16 16 N -0.92 -27.19 10.68 55.49 0.59 -26.59 16 17 Si 0.91 22.31 29.56 -169.99 -5.03 17.28 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.13 2.89 6.99 -3.07 -0.02 2.87 16 22 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 28 H 0.07 0.79 8.10 -51.93 -0.42 0.36 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.40 4.51 8.52 -40.82 -0.35 4.16 16 32 H 0.06 1.08 8.00 -51.93 -0.42 0.67 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.07 1.94 6.91 -51.93 -0.36 1.58 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 310.55 15.07 4.68 4.68 Total: -1.00 -32.67 310.55 -7.88 -40.54 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.55 Total: -0.59 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.82 Total: 2.09 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.25 Total: -53.70 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.67 -7.88 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752378124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.431 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds