Wall clock time and date at job start Mon Mar 30 2020 17:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46804 * 2 1 4 4 C 1.53001 * 109.46804 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.46900 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99943 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00165 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00271 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.77850 * 323.21294 * 8 7 5 10 10 C 1.55156 * 110.72267 * 199.97725 * 8 7 5 11 11 C 1.55122 * 101.48720 * 205.97088 * 10 8 7 12 12 N 1.47425 * 104.72620 * 37.29027 * 11 10 8 13 13 C 1.36934 * 125.64935 * 155.81410 * 12 11 10 14 14 H 1.08002 * 119.99686 * 189.80166 * 13 12 11 15 15 C 1.38804 * 120.00070 * 9.53495 * 13 12 11 16 16 N 1.31620 * 120.00406 * 9.87362 * 15 13 12 17 17 Si 1.86799 * 120.00161 * 189.87496 * 15 13 12 18 18 H 1.48502 * 109.47270 * 94.12759 * 17 15 13 19 19 H 1.48496 * 109.47727 * 214.12668 * 17 15 13 20 20 H 1.48500 * 109.47334 * 334.13189 * 17 15 13 21 21 C 1.47020 * 108.69873 * 335.55721 * 12 11 10 22 22 H 1.09003 * 109.46845 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47554 * 299.99985 * 1 2 3 24 24 H 1.08996 * 109.47232 * 60.00069 * 1 2 3 25 25 H 1.08994 * 109.47489 * 239.99630 * 2 1 3 26 26 H 1.09007 * 109.47238 * 119.99451 * 2 1 3 27 27 H 1.08994 * 109.47399 * 59.99575 * 3 2 1 28 28 H 1.09007 * 109.46775 * 299.99735 * 3 2 1 29 29 H 1.09005 * 109.47076 * 59.99900 * 4 3 2 30 30 H 1.08996 * 109.47232 * 299.99931 * 4 3 2 31 31 H 0.97007 * 119.99797 * 359.97438 * 7 5 4 32 32 H 1.09005 * 111.00151 * 324.20783 * 10 8 7 33 33 H 1.09004 * 111.00548 * 88.01974 * 10 8 7 34 34 H 1.09001 * 110.49915 * 278.45202 * 11 10 8 35 35 H 1.08996 * 110.34738 * 156.05693 * 11 10 8 36 36 H 0.97000 * 120.00544 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.88231 * 120.70045 * 21 12 11 38 38 H 1.09004 * 109.88149 * 241.86211 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0722 2.8634 -0.0013 6 8 3.2841 3.7853 -0.0017 7 7 5.3973 3.1098 -0.0024 8 6 5.8856 4.4910 -0.0036 9 1 5.2445 5.1272 -0.6138 10 6 7.3540 4.5537 -0.5006 11 6 7.8590 5.8475 0.1904 12 7 7.2118 5.8419 1.5150 13 6 7.6743 6.4852 2.6319 14 1 7.2188 6.2945 3.5924 15 6 8.7320 7.3783 2.5305 16 7 9.1636 7.7556 1.3457 17 14 9.5432 8.0448 4.0755 18 1 10.7217 7.2079 4.4163 19 1 9.9811 9.4441 3.8407 20 1 8.5717 8.0119 5.1982 21 6 5.9845 5.0364 1.4366 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 3.9329 0.9288 -0.8909 30 1 3.9337 0.9286 0.8891 31 1 6.0277 2.3725 -0.0025 32 1 7.9173 3.6826 -0.1658 33 1 7.3956 4.6498 -1.5856 34 1 7.5544 6.7270 -0.3768 35 1 8.9433 5.8212 0.2979 36 1 9.9030 8.3794 1.2748 37 1 6.0386 4.2085 2.1435 38 1 5.1176 5.6592 1.6575 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752378124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:01 Heat of formation + Delta-G solvation = -57.074294 kcal Electronic energy + Delta-G solvation = -17153.180531 eV Core-core repulsion = 14415.484345 eV Total energy + Delta-G solvation = -2737.696185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93726 -38.96288 -36.23227 -35.56293 -33.78163 -31.59483 -30.81903 -28.84875 -26.64311 -25.24831 -22.43939 -22.13373 -21.57508 -21.09677 -18.99166 -17.88512 -17.35889 -16.84051 -16.70735 -16.09040 -15.48500 -15.37086 -14.67444 -14.49542 -14.19069 -13.95074 -13.66417 -13.53833 -13.20225 -12.93560 -12.73423 -12.51019 -12.25130 -12.15104 -12.03498 -12.01588 -11.86486 -11.82850 -11.56339 -11.40983 -10.82634 -10.70755 -10.07875 -8.92223 -7.91752 -5.27772 1.45236 1.47034 1.56504 1.70248 2.21464 2.49074 3.27379 3.62639 3.73602 3.89994 3.98418 4.01907 4.11420 4.22667 4.41516 4.51686 4.56241 4.68690 4.72032 4.81118 4.89273 4.97824 5.00088 5.01636 5.10234 5.14635 5.31852 5.39839 5.42807 5.52566 5.54473 5.59708 5.67916 6.16557 6.64849 7.04491 7.34732 7.70575 8.36567 9.19964 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.051236 B = 0.004148 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.361590 B = 6748.364656 C = 7054.503287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.105 4.105 4 C -0.129 4.129 5 C 0.502 3.498 6 O -0.593 6.593 7 N -0.706 5.706 8 C 0.148 3.852 9 H 0.073 0.927 10 C -0.126 4.126 11 C 0.175 3.825 12 N -0.623 5.623 13 C -0.251 4.251 14 H 0.075 0.925 15 C -0.060 4.060 16 N -0.947 5.947 17 Si 0.982 3.018 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.271 1.271 21 C 0.128 3.872 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.418 0.582 32 H 0.089 0.911 33 H 0.095 0.905 34 H -0.002 1.002 35 H 0.046 0.954 36 H 0.251 0.749 37 H 0.032 0.968 38 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.264 -18.258 -5.019 21.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.144 4.144 4 C -0.168 4.168 5 C 0.291 3.709 6 O -0.473 6.473 7 N -0.358 5.358 8 C 0.041 3.959 9 H 0.092 0.908 10 C -0.164 4.164 11 C 0.050 3.950 12 N -0.350 5.350 13 C -0.380 4.380 14 H 0.092 0.908 15 C -0.254 4.254 16 N -0.594 5.594 17 Si 0.809 3.191 18 H -0.208 1.208 19 H -0.219 1.219 20 H -0.196 1.196 21 C 0.002 3.998 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.256 0.744 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.016 0.984 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -9.686 -17.476 -4.967 20.589 hybrid contribution 0.673 0.905 0.829 1.400 sum -9.013 -16.571 -4.138 19.312 Atomic orbital electron populations 1.21795 0.95973 1.02073 1.01515 1.21516 0.95934 0.94983 1.03145 1.21358 0.93433 0.97743 1.01834 1.21746 0.97374 0.90834 1.06865 1.21677 0.81812 0.93171 0.74221 1.90695 1.56477 1.48622 1.51517 1.45922 1.07473 1.07780 1.74624 1.21579 0.95726 0.83657 0.94913 0.90848 1.23147 0.93175 0.99173 1.00954 1.21299 0.96852 0.92729 0.84152 1.44769 1.23449 1.58396 1.08379 1.19394 1.13417 1.18266 0.86949 0.90756 1.25684 1.00695 0.98903 1.00100 1.70140 1.29532 1.36769 1.23006 0.85027 0.78479 0.76952 0.78623 1.20759 1.21890 1.19605 1.21696 0.88111 0.93652 0.96374 0.91544 0.93423 0.93125 0.90511 0.90922 0.93457 0.92909 0.85824 0.86548 0.74441 0.89239 0.88652 0.98445 0.93558 0.93996 0.95014 0.98306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.54 5.93 30.60 0.18 -1.36 16 3 C -0.11 -2.01 4.50 30.60 0.14 -1.87 16 4 C -0.13 -2.14 5.70 29.85 0.17 -1.97 16 5 C 0.50 13.95 7.83 87.66 0.69 14.64 16 6 O -0.59 -22.80 15.71 -3.04 -0.05 -22.85 16 7 N -0.71 -18.66 5.13 -436.93 -2.24 -20.90 16 8 C 0.15 5.31 3.23 46.18 0.15 5.46 16 9 H 0.07 2.93 7.70 -2.39 -0.02 2.91 16 10 C -0.13 -4.31 6.71 32.06 0.21 -4.10 16 11 C 0.17 8.59 5.44 86.93 0.47 9.07 16 12 N -0.62 -33.44 3.39 -691.58 -2.35 -35.79 16 13 C -0.25 -14.66 10.24 84.03 0.86 -13.80 16 14 H 0.07 4.22 7.85 -2.91 -0.02 4.20 16 15 C -0.06 -3.48 5.40 84.86 0.46 -3.02 16 16 N -0.95 -57.26 10.68 21.65 0.23 -57.03 16 17 Si 0.98 46.25 29.56 68.60 2.03 48.28 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 C 0.13 5.83 6.99 86.73 0.61 6.43 16 22 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 28 H 0.05 1.16 8.10 -2.38 -0.02 1.14 16 29 H 0.12 1.31 8.14 -2.38 -0.02 1.30 16 30 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.42 7.77 8.52 -92.70 -0.79 6.98 16 32 H 0.09 2.67 8.00 -2.38 -0.02 2.65 16 33 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 34 H 0.00 -0.14 8.08 -2.39 -0.02 -0.15 16 35 H 0.05 2.50 6.91 -2.39 -0.02 2.48 16 36 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.03 1.39 8.03 -2.39 -0.02 1.37 16 38 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: -1.00 -73.90 310.55 2.51 -71.40 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.23 Total: 8.81 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 4.65 Total: 8.08 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -4.36 Total: -113.72 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -73.90 2.51 -71.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752378124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.324 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds