Wall clock time and date at job start Mon Mar 30 2020 17:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47125 * 2 1 4 4 C 1.50701 * 115.54918 * 297.65983 * 3 2 1 5 5 O 1.21284 * 120.00298 * 116.61591 * 4 3 2 6 6 N 1.34775 * 120.00329 * 296.61047 * 4 3 2 7 7 C 1.46495 * 120.00414 * 175.07944 * 6 4 3 8 8 C 1.53004 * 109.47064 * 180.02562 * 7 6 4 9 9 N 1.46505 * 109.46816 * 180.02562 * 8 7 6 10 10 C 1.46499 * 119.99525 * 269.99883 * 9 8 7 11 11 C 1.36930 * 120.00135 * 90.00480 * 9 8 7 12 12 H 1.08002 * 120.00523 * 23.21308 * 11 9 8 13 13 C 1.38816 * 119.99764 * 203.22177 * 11 9 8 14 14 N 1.31616 * 120.00318 * 11.66302 * 13 11 9 15 15 Si 1.86797 * 119.99836 * 191.66525 * 13 11 9 16 16 H 1.48504 * 109.47630 * 59.99782 * 15 13 11 17 17 H 1.48503 * 109.47239 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47364 * 299.99846 * 15 13 11 19 19 C 1.53002 * 117.50466 * 151.98994 * 3 2 1 20 20 C 1.53005 * 117.50173 * 83.33049 * 3 2 1 21 21 H 1.08999 * 109.47108 * 296.24877 * 1 2 3 22 22 H 1.08994 * 109.47267 * 56.24802 * 1 2 3 23 23 H 1.09005 * 109.46553 * 176.24849 * 1 2 3 24 24 H 1.09003 * 109.47303 * 120.00123 * 2 1 3 25 25 H 1.09000 * 109.47316 * 239.99711 * 2 1 3 26 26 H 0.97001 * 119.99421 * 355.09058 * 6 4 3 27 27 H 1.08999 * 109.47448 * 300.00410 * 7 6 4 28 28 H 1.08998 * 109.46792 * 60.00726 * 7 6 4 29 29 H 1.08997 * 109.47360 * 299.99884 * 8 7 6 30 30 H 1.08998 * 109.46987 * 60.00523 * 8 7 6 31 31 H 1.08999 * 109.47458 * 94.85940 * 10 9 8 32 32 H 1.09007 * 109.47239 * 214.85457 * 10 9 8 33 33 H 1.08996 * 109.47841 * 334.85579 * 10 9 8 34 34 H 0.96994 * 120.00495 * 180.02562 * 14 13 11 35 35 H 1.09002 * 117.49052 * 359.97438 * 19 3 2 36 36 H 1.08996 * 117.50224 * 145.01693 * 19 3 2 37 37 H 1.09002 * 117.49676 * 214.98152 * 20 3 2 38 38 H 1.08997 * 117.49484 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6616 2.2656 -1.2043 5 8 0.9555 3.2430 -1.0732 6 7 2.1078 1.9158 -2.4269 7 6 1.6539 2.6505 -3.6103 8 6 2.3050 2.0558 -4.8606 9 7 1.8515 2.7909 -6.0440 10 6 0.6505 2.3554 -6.7610 11 6 2.5502 3.8850 -6.4798 12 1 3.5930 3.9976 -6.2222 13 6 1.9181 4.8495 -7.2525 14 7 0.6078 4.8389 -7.3763 15 14 2.9272 6.1625 -8.1168 16 1 3.8789 5.5169 -9.0565 17 1 2.0218 7.0659 -8.8714 18 1 3.6833 6.9489 -7.1093 19 6 3.4051 1.7092 0.6373 20 6 2.1269 2.1611 1.3480 21 1 -0.3633 0.4545 0.9217 22 1 -0.3633 0.5709 -0.8544 23 1 -0.3632 -1.0255 -0.0672 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 2.7295 1.1775 -2.5234 27 1 0.5699 2.5718 -3.6932 28 1 1.9360 3.6992 -3.5172 29 1 3.3890 2.1342 -4.7780 30 1 2.0225 1.0072 -4.9536 31 1 -0.2116 2.9165 -6.4003 32 1 0.7797 2.5345 -7.8285 33 1 0.4897 1.2914 -6.5879 34 1 0.1662 5.5125 -7.9165 35 1 3.9397 0.8570 1.0570 36 1 4.0293 2.4803 0.1858 37 1 1.9107 3.2293 1.3636 38 1 1.8203 1.6063 2.2347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753063487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:04 Heat of formation + Delta-G solvation = -23.005529 kcal Electronic energy + Delta-G solvation = -17393.986229 eV Core-core repulsion = 14657.767376 eV Total energy + Delta-G solvation = -2736.218853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19255 -38.24969 -37.58625 -35.72555 -33.29616 -32.79149 -29.97920 -27.94859 -26.09410 -24.71403 -23.53638 -23.07010 -22.39684 -20.36673 -18.79366 -17.80074 -17.13162 -16.69853 -16.68906 -15.87846 -15.69451 -15.14950 -14.96167 -14.78829 -14.33351 -14.07914 -13.96125 -13.34411 -13.13721 -12.78020 -12.66566 -12.61905 -12.51335 -12.38763 -12.14788 -12.10362 -12.02318 -11.79836 -11.33099 -10.96291 -10.76593 -10.67421 -10.09560 -8.87506 -7.86611 -5.37449 1.45461 1.47639 1.54420 1.57144 2.14049 2.50914 2.75919 3.28662 3.59637 3.69987 3.87043 3.90932 4.03390 4.20831 4.30847 4.42218 4.57088 4.61528 4.66508 4.75588 4.82347 4.97076 5.03103 5.05503 5.08335 5.13309 5.20018 5.23552 5.28871 5.38714 5.46475 5.61231 5.69506 6.29300 6.60338 7.10775 7.28826 7.81345 8.24180 9.16821 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036247 B = 0.004933 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.299203 B = 5674.616083 C = 5980.692979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.071 4.071 3 C -0.168 4.168 4 C 0.538 3.462 5 O -0.598 6.598 6 N -0.705 5.705 7 C 0.116 3.884 8 C 0.148 3.852 9 N -0.614 5.614 10 C 0.174 3.826 11 C -0.270 4.270 12 H 0.076 0.924 13 C -0.053 4.053 14 N -0.940 5.940 15 Si 0.971 3.029 16 H -0.272 1.272 17 H -0.295 1.295 18 H -0.278 1.278 19 C -0.137 4.137 20 C -0.153 4.153 21 H 0.054 0.946 22 H 0.020 0.980 23 H 0.076 0.924 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.416 0.584 27 H 0.030 0.970 28 H 0.025 0.975 29 H 0.065 0.935 30 H 0.076 0.924 31 H -0.001 1.001 32 H 0.020 0.980 33 H 0.037 0.963 34 H 0.248 0.752 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.936 -13.350 15.421 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C -0.172 4.172 4 C 0.325 3.675 5 O -0.478 6.478 6 N -0.357 5.357 7 C -0.011 4.011 8 C 0.021 3.979 9 N -0.337 5.337 10 C 0.029 3.971 11 C -0.400 4.400 12 H 0.093 0.907 13 C -0.249 4.249 14 N -0.586 5.586 15 Si 0.799 3.201 16 H -0.197 1.197 17 H -0.221 1.221 18 H -0.204 1.204 19 C -0.174 4.174 20 C -0.190 4.190 21 H 0.073 0.927 22 H 0.040 0.960 23 H 0.095 0.905 24 H 0.122 0.878 25 H 0.100 0.900 26 H 0.253 0.747 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.017 0.983 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.158 0.842 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.323 -12.580 15.347 20.546 hybrid contribution -0.017 1.227 -0.857 1.497 sum 5.306 -11.352 14.490 19.157 Atomic orbital electron populations 1.21752 0.96347 1.02065 1.00866 1.21068 0.95223 0.89906 1.04674 1.21556 1.05372 0.98058 0.92170 1.20398 0.78579 0.83759 0.84720 1.90677 1.40421 1.30129 1.86622 1.45853 1.48013 1.36366 1.05434 1.21921 0.97937 0.95424 0.85820 1.21134 0.97957 0.95192 0.83619 1.44165 1.30129 1.31824 1.27591 1.20604 0.87888 0.93623 0.94964 1.19559 0.93110 0.98587 1.28702 0.90675 1.25889 0.96365 0.99951 1.02657 1.70235 1.08416 1.36738 1.43206 0.85285 0.77661 0.78707 0.78445 1.19739 1.22136 1.20382 1.23229 0.88862 1.04261 1.01020 1.23061 1.01433 1.00401 0.94138 0.92651 0.96031 0.90496 0.87778 0.90003 0.74673 0.95110 0.95601 0.91709 0.90572 0.98297 0.96086 0.94417 0.94240 0.84213 0.89399 0.90700 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.81 71.98 0.71 -2.26 16 2 C -0.07 -1.11 5.82 30.59 0.18 -0.93 16 3 C -0.17 -3.64 1.94 -52.93 -0.10 -3.74 16 4 C 0.54 17.78 6.28 87.66 0.55 18.33 16 5 O -0.60 -26.65 16.65 -3.04 -0.05 -26.71 16 6 N -0.70 -21.62 5.55 -463.07 -2.57 -24.19 16 7 C 0.12 4.73 6.00 86.38 0.52 5.25 16 8 C 0.15 5.72 5.82 86.38 0.50 6.22 16 9 N -0.61 -30.96 2.92 -726.92 -2.12 -33.08 16 10 C 0.17 8.72 9.01 127.77 1.15 9.88 16 11 C -0.27 -14.94 9.66 84.04 0.81 -14.12 16 12 H 0.08 3.98 7.85 -2.91 -0.02 3.96 16 13 C -0.05 -3.06 5.13 84.86 0.43 -2.62 16 14 N -0.94 -57.26 10.65 21.65 0.23 -57.02 16 15 Si 0.97 45.83 29.57 68.60 2.03 47.86 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 C -0.14 -2.20 9.94 30.62 0.30 -1.89 16 20 C -0.15 -3.03 9.77 30.62 0.30 -2.73 16 21 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.02 0.55 7.51 -2.39 -0.02 0.53 16 23 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.10 1.01 8.11 -2.39 -0.02 0.99 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.42 9.21 8.48 -92.71 -0.79 8.43 16 27 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 2.31 8.03 -2.39 -0.02 2.29 16 30 H 0.08 2.45 7.86 -2.39 -0.02 2.43 16 31 H 0.00 -0.07 7.36 -2.39 -0.02 -0.09 16 32 H 0.02 1.11 7.30 -2.38 -0.02 1.09 16 33 H 0.04 1.56 7.84 -2.39 -0.02 1.54 16 34 H 0.25 14.76 8.31 -92.71 -0.77 13.98 16 35 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.91 7.96 -2.39 -0.02 1.89 16 38 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -74.23 317.58 3.11 -71.12 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.24 Total: 10.64 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.36 Total: 11.37 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.47 Total: -114.30 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.23 3.11 -71.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753063487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.118 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds