Wall clock time and date at job start Mon Mar 30 2020 17:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.01895 * 2 1 4 4 C 1.53879 * 110.07355 * 238.57808 * 2 1 3 5 5 C 1.54257 * 106.60130 * 240.69845 * 4 2 1 6 6 C 1.54890 * 104.19520 * 336.38867 * 5 4 2 7 7 C 1.54269 * 110.03227 * 121.39027 * 2 1 3 8 8 H 1.09000 * 110.48429 * 24.26544 * 7 2 1 9 9 C 1.52994 * 110.48693 * 261.75627 * 7 2 1 10 10 N 1.46496 * 109.47280 * 175.00248 * 9 7 2 11 11 C 1.34773 * 120.00281 * 180.02562 * 10 9 7 12 12 O 1.21590 * 120.00043 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00298 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00238 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47321 * 179.97438 * 14 13 11 16 16 H 1.07993 * 119.99727 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00035 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00022 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47247 * 90.00078 * 19 17 15 21 21 H 1.48500 * 109.47119 * 210.00286 * 19 17 15 22 22 H 1.48503 * 109.47120 * 330.00432 * 19 17 15 23 23 H 1.08994 * 109.47071 * 299.30303 * 1 2 3 24 24 H 1.09005 * 109.46948 * 59.29598 * 1 2 3 25 25 H 1.08999 * 109.47520 * 179.29957 * 1 2 3 26 26 H 1.09002 * 110.02843 * 359.97438 * 4 2 1 27 27 H 1.09003 * 110.02660 * 121.40367 * 4 2 1 28 28 H 1.09002 * 110.48576 * 217.71599 * 5 4 2 29 29 H 1.09000 * 110.60381 * 95.12145 * 5 4 2 30 30 H 1.09003 * 110.75715 * 279.63207 * 6 5 4 31 31 H 1.08996 * 110.75675 * 156.26368 * 6 5 4 32 32 H 1.09010 * 109.47086 * 294.99581 * 9 7 2 33 33 H 1.08999 * 109.47470 * 54.99773 * 9 7 2 34 34 H 0.96998 * 120.00092 * 359.97438 * 10 9 7 35 35 H 0.97001 * 119.99926 * 359.97438 * 13 11 10 36 36 H 1.09004 * 109.46954 * 300.00288 * 14 13 11 37 37 H 1.08996 * 109.47287 * 59.99538 * 14 13 11 38 38 H 0.97008 * 119.99683 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0582 -0.7535 -1.2334 5 6 2.8889 -1.9399 -0.7026 6 6 3.3143 -1.4995 0.7201 7 6 2.0584 -0.7549 1.2372 8 1 1.3146 -1.4659 1.5968 9 6 2.4349 0.2305 2.3454 10 7 2.8199 -0.5114 3.5485 11 6 3.1927 0.1537 4.6599 12 8 3.2099 1.3695 4.6638 13 7 3.5463 -0.5288 5.7670 14 6 3.9521 0.1941 6.9748 15 6 4.2939 -0.7936 8.0605 16 1 4.2170 -1.8538 7.8697 17 6 4.7058 -0.3438 9.2970 18 7 4.7999 0.9473 9.5291 19 14 5.1302 -1.5681 10.6425 20 1 6.5729 -1.9110 10.5627 21 1 4.8367 -0.9677 11.9686 22 1 4.3184 -2.7990 10.4657 23 1 -0.3633 0.5029 0.8961 24 1 -0.3633 0.5248 -0.8837 25 1 -0.3634 -1.0276 -0.0126 26 1 1.2244 -1.1199 -1.8323 27 1 2.6875 -0.0949 -1.8320 28 1 3.7656 -2.1025 -1.3296 29 1 2.2812 -2.8436 -0.6565 30 1 4.1712 -0.8272 0.6764 31 1 3.5335 -2.3663 1.3434 32 1 3.2716 0.8464 2.0151 33 1 1.5803 0.8687 2.5699 34 1 2.8058 -1.4812 3.5456 35 1 3.5322 -1.4987 5.7640 36 1 4.8248 0.8088 6.7544 37 1 3.1336 0.8318 7.3088 38 1 5.0893 1.2638 10.3993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354963621.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:54 Heat of formation + Delta-G solvation = -64.826069 kcal Electronic energy + Delta-G solvation = -16985.561792 eV Core-core repulsion = 14247.529465 eV Total energy + Delta-G solvation = -2738.032327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51986 -38.49143 -34.44453 -33.83962 -32.25116 -31.41176 -29.76230 -27.06263 -25.72948 -23.77411 -22.28050 -20.62923 -20.32636 -19.50463 -17.91083 -16.34478 -15.79974 -15.26794 -15.12770 -14.78056 -14.52931 -13.95911 -13.70735 -13.33976 -13.14548 -12.93112 -12.65323 -12.13082 -11.92718 -11.66147 -11.27977 -11.00965 -10.91327 -10.89746 -10.85815 -10.77778 -10.68773 -10.58503 -10.26843 -9.34390 -9.32532 -8.71834 -8.60132 -7.69278 -6.12039 -4.18395 3.26919 3.32140 3.34786 3.47791 4.03436 4.34618 4.37294 4.43232 4.50747 5.08265 5.09605 5.16861 5.22343 5.23970 5.30382 5.36060 5.41526 5.44032 5.63746 5.68094 5.74969 5.91135 5.96054 5.98574 5.99289 6.10691 6.18575 6.32511 6.96730 7.18774 7.57319 7.60866 7.62054 7.96431 8.09757 8.81125 9.01145 9.39220 9.53711 10.98288 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.051073 B = 0.003830 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.102289 B = 7308.919524 C = 7582.482254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.100 4.100 8 H 0.080 0.920 9 C 0.150 3.850 10 N -0.757 5.757 11 C 0.692 3.308 12 O -0.603 6.603 13 N -0.731 5.731 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.390 0.610 35 H 0.386 0.614 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 -6.819 -19.870 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.158 4.158 7 C -0.119 4.119 8 H 0.099 0.901 9 C 0.025 3.975 10 N -0.414 5.414 11 C 0.391 3.609 12 O -0.482 6.482 13 N -0.383 5.383 14 C 0.145 3.855 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.223 0.777 35 H 0.218 0.782 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.010 -5.508 -19.671 21.293 hybrid contribution 0.240 -1.472 0.803 1.694 sum -5.770 -6.980 -18.868 20.929 Atomic orbital electron populations 1.21893 0.94898 1.01683 1.01780 1.21710 0.95726 0.99728 0.93735 0.90584 1.22216 0.99338 0.97036 0.97168 1.22343 0.99425 0.97938 0.96526 1.22584 0.97476 0.99975 0.95752 1.22333 0.97736 0.97309 0.94536 0.90129 1.21098 0.99827 0.93506 0.83088 1.45147 1.74836 1.09127 1.12281 1.16175 0.78593 0.85759 0.80353 1.90866 1.61423 1.11949 1.83987 1.45707 1.70470 1.09419 1.12688 1.18965 0.95472 0.92140 0.78882 1.21236 1.46935 0.92988 0.96790 0.91974 1.24948 0.95202 0.95425 0.98496 1.69985 1.46086 1.12846 1.23413 0.86413 0.78722 0.80868 0.80864 1.20502 1.21033 1.19788 0.92419 0.92787 0.92706 0.91824 0.91910 0.91852 0.91795 0.91087 0.91501 0.92071 0.92174 0.77717 0.78245 0.95797 0.95791 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.84 37.16 0.33 -0.84 16 2 C -0.09 -0.78 3.07 -89.50 -0.27 -1.06 16 3 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 4 C -0.12 -0.92 6.46 -25.62 -0.17 -1.08 16 5 C -0.12 -0.97 6.83 -25.08 -0.17 -1.14 16 6 C -0.12 -1.09 6.20 -24.74 -0.15 -1.25 16 7 C -0.10 -0.98 2.41 -88.96 -0.21 -1.19 16 8 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 9 C 0.15 2.01 4.96 -4.05 -0.02 1.99 16 10 N -0.76 -11.68 5.45 -65.23 -0.36 -12.04 16 11 C 0.69 14.82 8.57 -86.92 -0.74 14.08 16 12 O -0.60 -15.67 16.34 5.29 0.09 -15.58 16 13 N -0.73 -16.13 5.55 -66.41 -0.37 -16.50 16 14 C 0.27 7.32 5.43 -5.19 -0.03 7.29 16 15 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 19 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.71 7.97 -51.93 -0.41 0.30 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.89 8.03 -51.92 -0.42 0.48 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.39 4.84 8.45 -40.82 -0.35 4.50 16 35 H 0.39 7.26 8.34 -40.82 -0.34 6.92 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -32.82 312.47 -8.56 -41.39 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.49 Total: 4.56 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.86 Total: 3.18 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.01 Total: -54.33 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.09 Total: -15.58 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.82 -8.56 -41.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354963621.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.439 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds