Wall clock time and date at job start Mon Mar 30 2020 17:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.47158 * 2 1 4 4 C 1.46006 * 118.53797 * 270.02569 * 3 2 1 5 5 C 1.52978 * 110.04217 * 161.81150 * 4 3 2 6 6 N 1.47193 * 108.74149 * 50.28141 * 5 4 3 7 7 C 1.46892 * 111.00158 * 167.64712 * 6 5 4 8 8 H 1.08997 * 109.47325 * 172.33393 * 7 6 5 9 9 C 1.53003 * 109.47278 * 52.33081 * 7 6 5 10 10 C 1.53002 * 109.47135 * 292.33525 * 7 6 5 11 11 C 1.50702 * 109.46699 * 296.05306 * 10 7 6 12 12 H 1.07996 * 120.00595 * 5.01087 * 11 10 7 13 13 C 1.37883 * 119.99738 * 185.01341 * 11 10 7 14 14 N 1.31514 * 119.99530 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00006 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47076 * 90.00093 * 15 13 11 17 17 H 1.48497 * 109.47033 * 210.00029 * 15 13 11 18 18 H 1.48499 * 109.47306 * 329.99934 * 15 13 11 19 19 C 1.46899 * 110.17170 * 291.01264 * 6 5 4 20 20 C 1.33718 * 118.53349 * 89.99973 * 3 2 1 21 21 O 1.21284 * 118.62561 * 1.71093 * 20 3 2 22 22 H 1.09005 * 109.46799 * 59.99688 * 1 2 3 23 23 H 1.08997 * 109.46917 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46847 * 299.99483 * 1 2 3 25 25 H 1.09006 * 109.47080 * 240.00508 * 2 1 3 26 26 H 1.08998 * 109.47142 * 120.00416 * 2 1 3 27 27 H 1.08997 * 109.37298 * 281.98607 * 4 3 2 28 28 H 1.08998 * 109.37823 * 41.75772 * 4 3 2 29 29 H 1.08991 * 109.57981 * 290.50578 * 5 4 3 30 30 H 1.09003 * 109.59747 * 170.06181 * 5 4 3 31 31 H 1.08996 * 109.47449 * 180.02562 * 9 7 6 32 32 H 1.08997 * 109.47198 * 300.00390 * 9 7 6 33 33 H 1.09006 * 109.47155 * 59.99958 * 9 7 6 34 34 H 1.08993 * 109.47232 * 56.04872 * 10 7 6 35 35 H 1.08995 * 109.47184 * 176.05450 * 10 7 6 36 36 H 0.97001 * 119.99504 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.38899 * 170.45746 * 19 6 5 38 38 H 1.09000 * 109.38834 * 290.14532 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2504 2.0391 -1.2827 5 6 2.3109 3.5556 -1.0908 6 7 3.2502 3.8569 0.0017 7 6 3.5719 5.2897 0.0391 8 1 4.1565 5.5076 0.9328 9 6 2.2762 6.1029 0.0663 10 6 4.3823 5.6630 -1.2039 11 6 5.7013 4.9346 -1.1810 12 1 5.9053 4.2110 -0.4057 13 6 6.6479 5.1921 -2.1499 14 7 7.7993 4.5567 -2.1296 15 14 6.2950 6.4432 -3.4913 16 1 6.7457 7.7864 -3.0464 17 1 7.0229 6.0615 -4.7281 18 1 4.8360 6.4764 -3.7659 19 6 2.6947 3.4085 1.2855 20 6 2.2313 1.9834 1.1748 21 8 2.0422 1.3531 2.1935 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.1936 1.6898 -1.7028 28 1 1.4375 1.7950 -1.9665 29 1 1.3202 3.9312 -0.8351 30 1 2.6567 4.0270 -2.0107 31 1 2.5150 7.1661 0.0935 32 1 1.6917 5.8850 -0.8275 33 1 1.6988 5.8370 0.9518 34 1 3.8268 5.3805 -2.0981 35 1 4.5610 6.7382 -1.2117 36 1 8.4653 4.7381 -2.8110 37 1 3.4616 3.4807 2.0566 38 1 1.8509 4.0432 1.5562 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411530914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:50 Heat of formation + Delta-G solvation = -48.988453 kcal Electronic energy + Delta-G solvation = -18200.808255 eV Core-core repulsion = 15463.462698 eV Total energy + Delta-G solvation = -2737.345557 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61920 -39.09997 -36.98948 -34.98085 -33.43994 -31.57704 -30.47614 -29.50653 -26.95648 -24.96126 -24.57481 -23.41267 -20.77163 -19.39546 -18.73052 -18.05718 -17.68667 -16.80098 -16.28041 -16.24662 -15.63336 -15.32210 -14.69930 -14.63540 -14.55737 -13.94446 -13.87351 -13.70586 -13.36469 -13.24317 -12.90938 -12.78781 -12.53017 -12.47427 -12.13118 -12.05948 -11.89988 -11.59243 -11.38485 -11.12179 -10.79165 -10.63287 -9.72764 -9.09581 -8.13117 -6.12879 1.42424 1.43321 1.52266 1.54259 2.02571 2.46050 2.90330 3.23968 3.55324 3.89230 4.02970 4.16700 4.17948 4.24415 4.34260 4.42546 4.49741 4.53733 4.56608 4.59775 4.75799 4.84349 5.00592 5.01854 5.07182 5.11147 5.21119 5.24988 5.27392 5.49444 5.56672 5.78233 6.13664 6.22454 6.39687 6.53613 6.97411 7.08595 7.48296 9.04445 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.006677 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.651198 B = 4192.416119 C = 4420.166383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 N -0.597 5.597 4 C 0.119 3.881 5 C 0.035 3.965 6 N -0.530 5.530 7 C 0.096 3.904 8 H 0.063 0.937 9 C -0.177 4.177 10 C -0.001 4.001 11 C -0.491 4.491 12 H 0.033 0.967 13 C -0.004 4.004 14 N -0.961 5.961 15 Si 0.945 3.055 16 H -0.274 1.274 17 H -0.294 1.294 18 H -0.240 1.240 19 C 0.042 3.958 20 C 0.519 3.481 21 O -0.596 6.596 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.036 0.964 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.024 0.976 36 H 0.259 0.741 37 H 0.095 0.905 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.351 -2.350 -0.609 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 N -0.329 5.329 4 C -0.003 4.003 5 C -0.093 4.093 6 N -0.255 5.255 7 C -0.012 4.012 8 H 0.081 0.919 9 C -0.236 4.236 10 C -0.039 4.039 11 C -0.529 4.529 12 H 0.051 0.949 13 C -0.199 4.199 14 N -0.604 5.604 15 Si 0.770 3.230 16 H -0.199 1.199 17 H -0.220 1.220 18 H -0.164 1.164 19 C -0.088 4.088 20 C 0.308 3.692 21 O -0.478 6.478 22 H 0.088 0.912 23 H 0.103 0.897 24 H 0.055 0.945 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.113 0.887 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.855 -2.947 -0.286 17.114 hybrid contribution 0.138 0.769 -0.249 0.820 sum -16.717 -2.179 -0.535 16.867 Atomic orbital electron populations 1.22011 0.94229 1.03241 1.01736 1.21636 0.95663 0.81755 1.03402 1.47603 1.64015 1.14990 1.06249 1.21686 1.02510 0.92007 0.84100 1.22555 0.94883 0.95214 0.96636 1.62549 1.42265 1.18613 1.02112 1.21571 0.95365 0.84888 0.99388 0.91889 1.22434 0.97670 1.01293 1.02189 1.19615 0.94142 0.95598 0.94531 1.21315 0.99227 1.21520 1.10884 0.94896 1.25985 0.94766 0.98503 1.00644 1.70105 1.08174 1.45397 1.36677 0.85737 0.79858 0.79121 0.78284 1.19913 1.22025 1.16365 1.22188 1.00462 0.91664 0.94486 1.20376 0.76137 0.89528 0.83132 1.90647 1.55302 1.65834 1.36006 0.91187 0.89718 0.94491 0.88275 0.91850 0.92020 0.86952 0.92260 0.88482 0.91239 0.91461 0.91972 0.95442 0.95778 0.93177 0.88667 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 10.23 71.98 0.74 -2.10 16 2 C 0.10 2.25 6.01 86.38 0.52 2.77 16 3 N -0.60 -16.78 2.83 -825.23 -2.33 -19.11 16 4 C 0.12 2.97 6.57 86.47 0.57 3.53 16 5 C 0.03 0.96 4.38 86.24 0.38 1.33 16 6 N -0.53 -18.22 4.34 -875.66 -3.80 -22.02 16 7 C 0.10 3.36 2.27 44.92 0.10 3.46 16 8 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 9 C -0.18 -4.55 8.44 71.98 0.61 -3.94 16 10 C 0.00 -0.06 3.47 29.85 0.10 0.04 16 11 C -0.49 -27.10 9.37 25.60 0.24 -26.86 16 12 H 0.03 2.08 7.96 -2.91 -0.02 2.06 16 13 C 0.00 -0.25 5.47 84.66 0.46 0.21 16 14 N -0.96 -60.46 13.96 21.45 0.30 -60.16 16 15 Si 0.95 42.90 27.37 68.60 1.88 44.78 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 18 H -0.24 -9.71 6.69 99.48 0.67 -9.05 16 19 C 0.04 1.35 5.44 85.42 0.46 1.81 16 20 C 0.52 17.55 7.56 87.68 0.66 18.21 16 21 O -0.60 -23.58 16.31 -3.04 -0.05 -23.63 16 22 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 1.82 8.03 -2.38 -0.02 1.80 16 26 H 0.06 1.75 7.21 -2.39 -0.02 1.73 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.11 1.92 8.13 -2.39 -0.02 1.90 16 29 H 0.06 1.36 6.96 -2.39 -0.02 1.34 16 30 H 0.10 2.81 6.07 -2.39 -0.01 2.80 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.57 6.60 -2.39 -0.02 1.55 16 33 H 0.06 1.40 6.59 -2.38 -0.02 1.39 16 34 H 0.03 1.12 5.65 -2.39 -0.01 1.10 16 35 H 0.02 1.00 7.29 -2.39 -0.02 0.98 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.09 2.32 6.41 -2.39 -0.02 2.30 16 Total: -1.00 -70.99 297.04 1.83 -69.16 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.98 Total: 12.50 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.85 Total: -1.52 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -5.83 Total: -101.29 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Total: -70.99 1.83 -69.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.174 kcal (2) G-P(sol) polarization free energy of solvation -70.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds