Wall clock time and date at job start Mon Mar 30 2020 17:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.99728 * 2 1 4 4 C 1.54330 * 109.99541 * 238.95812 * 2 1 3 5 5 H 1.08997 * 110.66682 * 337.04552 * 4 2 1 6 6 C 1.53003 * 110.85207 * 100.19936 * 4 2 1 7 7 C 1.55159 * 103.02346 * 218.66590 * 4 2 1 8 8 H 1.08997 * 111.00439 * 277.23492 * 7 4 2 9 9 C 1.52992 * 111.00842 * 153.38005 * 7 4 2 10 10 C 1.54915 * 101.57965 * 35.30376 * 7 4 2 11 11 N 1.47031 * 109.88290 * 121.08899 * 2 1 3 12 12 C 1.34771 * 125.64473 * 298.40263 * 11 2 1 13 13 O 1.21583 * 120.00543 * 359.97438 * 12 11 2 14 14 N 1.34784 * 119.99547 * 179.71375 * 12 11 2 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47276 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99925 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00389 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46851 * 90.00139 * 20 18 16 22 22 H 1.48501 * 109.47218 * 209.99776 * 20 18 16 23 23 H 1.48503 * 109.47376 * 330.00226 * 20 18 16 24 24 H 1.09000 * 109.47208 * 300.36232 * 1 2 3 25 25 H 1.09003 * 109.46665 * 60.36439 * 1 2 3 26 26 H 1.09004 * 109.46975 * 180.35568 * 1 2 3 27 27 H 1.08998 * 109.47518 * 173.69334 * 6 4 2 28 28 H 1.09004 * 109.46834 * 293.69539 * 6 4 2 29 29 H 1.09003 * 109.47192 * 53.68841 * 6 4 2 30 30 H 1.09000 * 109.47274 * 306.35469 * 9 7 4 31 31 H 1.08998 * 109.46893 * 66.35129 * 9 7 4 32 32 H 1.08994 * 109.47692 * 186.35280 * 9 7 4 33 33 H 1.08994 * 110.36882 * 204.15274 * 10 7 4 34 34 H 1.09000 * 110.45324 * 81.87905 * 10 7 4 35 35 H 0.96999 * 120.00044 * 359.97438 * 14 12 11 36 36 H 1.09004 * 109.47024 * 300.00310 * 15 14 12 37 37 H 1.09005 * 109.47136 * 59.99926 * 15 14 12 38 38 H 0.96998 * 120.00132 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 1.3068 -1.4406 -1.6223 6 6 2.4818 0.2386 -2.3326 7 6 3.2864 -1.5184 -0.6913 8 1 4.1670 -0.8769 -0.6577 9 6 3.5593 -2.7778 -1.5160 10 6 2.8099 -1.8824 0.7371 11 7 2.0300 -0.7140 1.1841 12 6 1.8072 -0.3618 2.4657 13 8 1.1416 0.6237 2.7186 14 7 2.3179 -1.1053 3.4673 15 6 2.0763 -0.7223 4.8606 16 6 2.7508 -1.7099 5.7773 17 1 3.3039 -2.5402 5.3635 18 6 2.6611 -1.5542 7.1443 19 7 1.9864 -0.5441 7.6482 20 14 3.4967 -2.7789 8.2807 21 1 4.8800 -2.3223 8.5691 22 1 2.7329 -2.8769 9.5504 23 1 3.5415 -4.1110 7.6259 24 1 -0.3633 0.5194 0.8867 25 1 -0.3633 0.5082 -0.8933 26 1 -0.3633 -1.0277 0.0064 27 1 2.9529 -0.3051 -3.1514 28 1 1.6047 0.7678 -2.7049 29 1 3.1900 0.9559 -1.9178 30 1 2.6524 -3.3800 -1.5704 31 1 3.8675 -2.4935 -2.5221 32 1 4.3523 -3.3571 -1.0431 33 1 3.6655 -2.0410 1.3935 34 1 2.1807 -2.7721 0.7136 35 1 2.8454 -1.8939 3.2656 36 1 2.4813 0.2739 5.0390 37 1 1.0038 -0.7187 5.0556 38 1 1.9229 -0.4348 8.6099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419519302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:07 Heat of formation + Delta-G solvation = -69.878274 kcal Electronic energy + Delta-G solvation = -17698.369146 eV Core-core repulsion = 14960.117739 eV Total energy + Delta-G solvation = -2738.251407 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.45430 -39.22750 -36.18453 -34.63449 -34.05322 -33.11890 -29.99199 -29.03895 -27.18242 -25.35085 -24.46132 -22.48721 -21.06648 -20.74007 -19.31348 -17.96334 -17.62294 -16.77940 -16.36029 -15.75275 -15.24369 -15.05952 -14.75710 -14.56720 -14.27975 -14.00597 -13.90456 -13.52047 -13.09068 -13.03962 -12.91966 -12.79807 -12.71120 -12.45399 -12.37786 -12.22433 -11.63187 -11.55526 -11.48744 -11.23899 -11.01513 -10.81189 -10.05517 -9.39467 -8.29309 -6.46485 1.42480 1.46010 1.56856 1.74789 2.20910 2.38304 3.05419 3.23417 3.52458 3.58909 3.83989 4.19155 4.31955 4.39922 4.52298 4.57160 4.64934 4.66881 4.72737 4.84835 4.96773 5.04753 5.08915 5.14605 5.15720 5.23943 5.25656 5.33403 5.43071 5.48481 5.53444 5.56401 5.73413 5.83694 6.24399 6.64928 7.18034 7.23942 7.70098 8.83313 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036756 B = 0.005250 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.598753 B = 5331.957342 C = 5919.286258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.054 0.946 4 C -0.084 4.084 5 H 0.100 0.900 6 C -0.137 4.137 7 C -0.091 4.091 8 H 0.083 0.917 9 C -0.133 4.133 10 C 0.094 3.906 11 N -0.636 5.636 12 C 0.705 3.295 13 O -0.645 6.645 14 N -0.723 5.723 15 C 0.287 3.713 16 C -0.555 4.555 17 H 0.082 0.918 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.988 3.012 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.255 1.255 24 H 0.029 0.971 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.401 0.599 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -6.185 -21.562 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.072 0.928 4 C -0.103 4.103 5 H 0.118 0.882 6 C -0.194 4.194 7 C -0.110 4.110 8 H 0.102 0.898 9 C -0.191 4.191 10 C -0.028 4.028 11 N -0.375 5.375 12 C 0.407 3.593 13 O -0.528 6.528 14 N -0.377 5.377 15 C 0.163 3.837 16 C -0.593 4.593 17 H 0.100 0.900 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.811 3.189 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.179 1.179 24 H 0.048 0.952 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.236 0.764 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.502 -5.369 -21.109 22.061 hybrid contribution 0.168 -0.209 1.224 1.253 sum 3.670 -5.577 -19.885 20.976 Atomic orbital electron populations 1.22089 0.95326 1.01992 1.02002 1.21690 0.94309 0.95676 0.84011 0.92801 1.22360 0.97511 0.97575 0.92809 0.88161 1.21746 1.01723 0.98366 0.97598 1.22397 0.97686 0.98612 0.92326 0.89834 1.21667 1.02402 0.95164 0.99866 1.22627 0.95078 0.88098 0.96999 1.47720 1.56350 1.30687 1.02698 1.15880 0.80150 0.82683 0.80624 1.90809 1.47237 1.31046 1.83734 1.45353 1.56324 1.30260 1.05774 1.18410 0.94277 0.94664 0.76302 1.21564 1.34371 1.11704 0.91673 0.89987 1.26089 0.95623 0.97831 0.99973 1.70149 1.41739 1.31642 1.13436 0.85109 0.78021 0.78637 0.77131 1.19485 1.20809 1.17884 0.95216 0.89271 0.92359 0.90004 0.91729 0.93195 0.91846 0.90592 0.91749 0.90943 0.90590 0.76356 0.99841 0.99798 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 9.11 71.98 0.66 -3.74 16 2 C 0.15 4.08 3.06 45.34 0.14 4.22 16 3 H 0.05 1.67 7.77 -2.39 -0.02 1.65 16 4 C -0.08 -1.45 2.54 -9.60 -0.02 -1.48 16 5 H 0.10 1.49 7.72 -2.39 -0.02 1.47 16 6 C -0.14 -1.83 9.16 71.98 0.66 -1.17 16 7 C -0.09 -1.54 3.09 -9.40 -0.03 -1.57 16 8 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 9 C -0.13 -1.48 9.29 71.98 0.67 -0.81 16 10 C 0.09 2.25 6.04 86.86 0.52 2.77 16 11 N -0.64 -21.55 3.06 -805.87 -2.47 -24.02 16 12 C 0.70 32.69 8.28 179.05 1.48 34.17 16 13 O -0.65 -36.02 15.38 -3.98 -0.06 -36.08 16 14 N -0.72 -34.13 5.51 -482.29 -2.66 -36.79 16 15 C 0.29 16.75 5.43 85.63 0.46 17.21 16 16 C -0.56 -31.35 9.28 25.60 0.24 -31.11 16 17 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 18 C 0.00 0.25 5.46 84.65 0.46 0.71 16 19 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 20 Si 0.99 43.03 29.54 68.60 2.03 45.05 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 H 0.03 1.09 6.88 -2.39 -0.02 1.07 16 25 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.05 0.76 8.07 -2.39 -0.02 0.74 16 30 H 0.06 0.67 8.11 -2.39 -0.02 0.65 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.72 7.30 -2.39 -0.02 1.71 16 34 H 0.08 1.65 8.04 -2.39 -0.02 1.63 16 35 H 0.40 16.04 6.80 -92.71 -0.63 15.41 16 36 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 37 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 38 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -75.54 308.61 2.76 -72.78 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.39 Total: 17.07 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 5.24 Total: 19.21 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -4.84 Total: -118.03 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.06 Total: -36.08 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -75.54 2.76 -72.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419519302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.898 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds