Wall clock time and date at job start Mon Mar 30 2020 17:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46840 * 2 1 4 4 C 1.46501 * 119.99623 * 264.39045 * 3 2 1 5 5 C 1.50702 * 109.47361 * 90.00109 * 4 3 2 6 6 H 1.07998 * 119.99500 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00084 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47356 * 59.99899 * 9 7 5 11 11 H 1.48501 * 109.47242 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47152 * 300.00121 * 9 7 5 13 13 C 1.34773 * 119.99932 * 84.39153 * 3 2 1 14 14 O 1.21283 * 119.99479 * 185.30717 * 13 3 2 15 15 C 1.50693 * 120.00210 * 5.30561 * 13 3 2 16 16 H 1.08997 * 109.88312 * 3.04390 * 15 13 3 17 17 C 1.54319 * 109.88857 * 241.84346 * 15 13 3 18 18 C 1.55144 * 103.01934 * 218.30915 * 17 15 13 19 19 C 1.54910 * 101.65270 * 35.65692 * 18 17 15 20 20 N 1.47444 * 109.89042 * 124.07557 * 15 13 3 21 21 C 1.46903 * 110.99749 * 356.14666 * 20 15 13 22 22 H 1.08996 * 109.47586 * 299.99854 * 1 2 3 23 23 H 1.09004 * 109.46850 * 60.00609 * 1 2 3 24 24 H 1.09007 * 109.46875 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47066 * 119.99883 * 2 1 3 26 26 H 1.08995 * 109.47107 * 239.99918 * 2 1 3 27 27 H 1.09003 * 109.46840 * 210.00410 * 4 3 2 28 28 H 1.08996 * 109.47020 * 329.99922 * 4 3 2 29 29 H 0.97000 * 119.99714 * 179.97438 * 8 7 5 30 30 H 1.08996 * 110.70906 * 336.69315 * 17 15 13 31 31 H 1.09003 * 110.70574 * 99.93003 * 17 15 13 32 32 H 1.09000 * 110.99039 * 277.56443 * 18 17 15 33 33 H 1.08998 * 111.02194 * 153.75771 * 18 17 15 34 34 H 1.08996 * 110.37347 * 204.10057 * 19 18 17 35 35 H 1.08997 * 110.46517 * 81.80330 * 19 18 17 36 36 H 1.09007 * 109.47088 * 70.59941 * 21 20 15 37 37 H 1.08997 * 109.47133 * 190.59659 * 21 20 15 38 38 H 1.09001 * 109.47493 * 310.60229 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3793 2.0305 -1.2627 5 6 1.1700 2.7244 -1.8346 6 1 0.2269 2.6860 -1.3097 7 6 1.2678 3.4091 -3.0273 8 7 2.4164 3.4562 -3.6662 9 14 -0.2310 4.2698 -3.7358 10 1 -0.7156 5.2922 -2.7739 11 1 0.1349 4.9278 -5.0158 12 1 -1.3043 3.2732 -3.9812 13 6 2.1353 2.0546 1.1616 14 8 2.4469 3.2267 1.1542 15 6 1.8791 1.3512 2.4694 16 1 1.6654 0.2978 2.2882 17 6 0.6907 2.0136 3.1978 18 6 1.1283 1.9767 4.6858 19 6 2.6552 2.2105 4.5688 20 7 3.0564 1.4803 3.3475 21 6 4.1543 2.1711 2.6579 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 3.1670 2.7622 -1.0828 28 1 2.7351 1.2798 -1.9684 29 1 2.4851 3.9376 -4.5055 30 1 0.5567 3.0415 2.8609 31 1 -0.2221 1.4364 3.0501 32 1 0.9151 1.0051 5.1314 33 1 0.6531 2.7769 5.2530 34 1 3.1691 1.8043 5.4400 35 1 2.8709 3.2737 4.4634 36 1 3.8983 3.2229 2.5300 37 1 5.0650 2.0883 3.2510 38 1 4.3140 1.7147 1.6810 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428485184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:35 Heat of formation + Delta-G solvation = -23.885262 kcal Electronic energy + Delta-G solvation = -18478.230564 eV Core-core repulsion = 15741.973563 eV Total energy + Delta-G solvation = -2736.257001 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.22712 -37.34993 -35.28022 -32.76657 -31.88247 -30.08726 -29.39896 -26.95069 -25.34931 -23.34688 -22.77816 -21.17818 -20.93908 -17.99478 -16.98351 -16.55992 -15.78195 -15.33839 -14.90608 -14.34466 -14.16805 -13.66757 -13.38303 -13.07523 -12.84561 -12.47214 -12.18384 -11.78000 -11.71178 -11.44303 -11.28371 -11.22426 -11.07753 -10.99300 -10.85274 -10.77696 -10.62957 -10.35429 -10.06131 -9.57897 -9.20931 -8.42463 -8.00660 -7.60502 -6.03575 -4.07544 3.25627 3.31432 3.35840 3.39524 3.92260 4.28811 4.44838 4.69754 4.80296 5.03700 5.21190 5.31426 5.34076 5.53805 5.58299 5.70432 5.74268 5.81244 5.84128 5.89274 5.91100 6.00515 6.15397 6.17674 6.31451 6.32293 6.40822 6.73884 7.03558 7.06567 7.13502 7.42142 7.56549 7.92716 8.24656 8.41892 8.90428 9.08122 9.57031 11.04634 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030321 B = 0.007083 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.219044 B = 3952.048089 C = 4058.248625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.594 5.594 4 C 0.246 3.754 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.498 3.502 14 O -0.540 6.540 15 C 0.044 3.956 16 H 0.102 0.898 17 C -0.127 4.127 18 C -0.126 4.126 19 C 0.039 3.961 20 N -0.512 5.512 21 C 0.008 3.992 22 H 0.049 0.951 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.031 0.969 29 H 0.263 0.737 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 -7.114 13.170 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.016 4.016 3 N -0.325 5.325 4 C 0.127 3.873 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.284 3.716 14 O -0.418 6.418 15 C -0.068 4.068 16 H 0.120 0.880 17 C -0.166 4.166 18 C -0.164 4.164 19 C -0.089 4.089 20 N -0.237 5.237 21 C -0.140 4.140 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.474 -6.914 13.078 14.866 hybrid contribution -1.099 1.224 -0.867 1.859 sum -2.572 -5.690 12.211 13.716 Atomic orbital electron populations 1.22256 0.96342 1.01048 1.03179 1.21468 0.94484 0.83821 1.01873 1.48331 1.62886 1.13071 1.08256 1.19285 0.96609 0.93040 0.78348 1.21389 0.96237 1.32649 1.05718 0.92438 1.24933 0.96128 0.96224 0.96867 1.69919 1.24166 1.42742 1.16713 0.86591 0.82891 0.79887 0.78240 1.20259 1.21186 1.20261 1.20573 0.78487 0.87170 0.85407 1.90643 1.48257 1.15866 1.87044 1.22790 0.91643 1.01058 0.91273 0.88014 1.22725 0.97134 1.02061 0.94700 1.22683 0.95334 1.02111 0.96262 1.23119 0.95259 0.97160 0.93356 1.64026 1.06246 1.48417 1.05011 1.22862 0.93374 0.99400 0.98398 0.93233 0.90825 0.92632 0.91604 0.90472 0.94196 0.95083 0.92714 0.90322 0.90502 0.90701 0.90785 0.90285 0.93144 0.91975 0.92270 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.20 37.16 0.38 -2.22 16 2 C 0.11 1.77 5.83 -4.04 -0.02 1.75 16 3 N -0.59 -12.65 2.47 -175.06 -0.43 -13.08 16 4 C 0.25 6.45 5.16 -5.19 -0.03 6.43 16 5 C -0.52 -14.74 9.21 -34.44 -0.32 -15.06 16 6 H 0.06 1.62 7.42 -52.49 -0.39 1.23 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.50 10.42 4.60 -10.99 -0.05 10.37 16 14 O -0.54 -13.47 13.59 5.55 0.08 -13.39 16 15 C 0.04 0.71 3.35 -67.88 -0.23 0.48 16 16 H 0.10 1.50 5.42 -51.93 -0.28 1.22 16 17 C -0.13 -1.83 6.44 -24.91 -0.16 -1.99 16 18 C -0.13 -1.46 7.08 -24.59 -0.17 -1.63 16 19 C 0.04 0.51 6.73 -2.30 -0.02 0.49 16 20 N -0.51 -7.97 5.44 -232.95 -1.27 -9.24 16 21 C 0.01 0.13 8.24 60.07 0.50 0.63 16 22 H 0.05 0.73 7.82 -51.93 -0.41 0.33 16 23 H 0.07 1.34 7.57 -51.93 -0.39 0.94 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.92 5.98 -51.93 -0.31 0.60 16 26 H 0.08 1.24 7.83 -51.93 -0.41 0.84 16 27 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 28 H 0.03 0.82 7.86 -51.93 -0.41 0.42 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.08 1.33 7.61 -51.93 -0.40 0.93 16 31 H 0.08 0.96 7.97 -51.93 -0.41 0.55 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.70 7.61 -51.93 -0.40 0.31 16 36 H 0.06 1.20 5.95 -51.93 -0.31 0.89 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.22 6.91 -51.93 -0.36 0.86 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -31.98 300.42 -7.71 -39.69 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.11 Total: -0.33 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.22 Total: 0.87 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.96 Total: -48.34 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.98 -7.71 -39.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428485184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.805 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds