Wall clock time and date at job start Mon Mar 30 2020 17:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46493 * 119.99811 * 89.99895 * 3 2 1 5 5 C 1.50706 * 109.47492 * 90.00399 * 4 3 2 6 6 H 1.08004 * 119.99292 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00653 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99582 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00141 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47121 * 90.00123 * 9 7 5 11 11 H 1.48507 * 109.47183 * 210.00184 * 9 7 5 12 12 H 1.48498 * 109.47234 * 330.00117 * 9 7 5 13 13 C 1.34778 * 120.00058 * 270.00324 * 3 2 1 14 14 O 1.21273 * 119.99770 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99918 * 359.97438 * 13 3 2 16 16 H 1.09002 * 109.91122 * 318.90483 * 15 13 3 17 17 C 1.54002 * 109.91813 * 80.00102 * 15 13 3 18 18 C 1.54594 * 105.14019 * 120.57557 * 17 15 13 19 19 C 1.54933 * 102.91886 * 21.95960 * 18 17 15 20 20 N 1.47899 * 109.91701 * 197.58973 * 15 13 3 21 21 C 1.46898 * 110.99692 * 94.80547 * 20 15 13 22 22 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 23 23 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 26 26 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 27 27 H 1.09006 * 109.47571 * 210.00074 * 4 3 2 28 28 H 1.09005 * 109.47727 * 330.00531 * 4 3 2 29 29 H 0.97002 * 119.99852 * 179.97438 * 8 7 5 30 30 H 1.08997 * 110.31259 * 239.49720 * 17 15 13 31 31 H 1.09004 * 110.30676 * 1.66079 * 17 15 13 32 32 H 1.09000 * 110.72077 * 140.32051 * 18 17 15 33 33 H 1.08998 * 110.72553 * 263.42596 * 18 17 15 34 34 H 1.08999 * 110.67094 * 81.02470 * 19 18 17 35 35 H 1.09000 * 110.66693 * 203.98101 * 19 18 17 36 36 H 1.08997 * 109.47081 * 60.00285 * 21 20 15 37 37 H 1.09001 * 109.46824 * 179.97438 * 21 20 15 38 38 H 1.08998 * 109.47227 * 299.99654 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8351 1.7038 6 1 4.3429 1.2309 1.0957 7 6 4.1495 2.3905 2.8774 8 7 3.3494 3.1265 3.6176 9 14 5.9134 2.0964 3.4170 10 1 6.7857 3.1610 2.8594 11 1 5.9882 2.1213 4.9000 12 1 6.3688 0.7729 2.9206 13 6 2.2430 2.0166 -1.1672 14 8 2.6468 3.1602 -1.1671 15 6 1.9923 1.3061 -2.4723 16 1 2.3429 0.2760 -2.4075 17 6 0.4879 1.3282 -2.8012 18 6 0.3825 2.0569 -4.1606 19 6 1.8018 1.8839 -4.7573 20 7 2.6870 2.0110 -3.5713 21 6 4.0037 1.4133 -3.8306 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0956 3.1411 1.1385 28 1 1.5817 1.6877 2.0284 29 1 3.6755 3.5169 4.4435 30 1 0.1042 0.3116 -2.8861 31 1 -0.0589 1.8770 -2.0344 32 1 -0.3640 1.5808 -4.7964 33 1 0.1479 3.1114 -4.0158 34 1 1.9098 0.9003 -5.2143 35 1 2.0122 2.6691 -5.4834 36 1 3.8791 0.3672 -4.1100 37 1 4.4926 1.9503 -4.6434 38 1 4.6159 1.4789 -2.9312 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428485186.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:38 Heat of formation + Delta-G solvation = -24.530174 kcal Electronic energy + Delta-G solvation = -18276.943824 eV Core-core repulsion = 15540.658858 eV Total energy + Delta-G solvation = -2736.284966 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83445 -37.49151 -35.13244 -32.80767 -32.05813 -30.11265 -29.37520 -26.86741 -25.51804 -23.26979 -22.82136 -21.17582 -20.97981 -18.04490 -16.86732 -16.28596 -15.92235 -15.52347 -14.71479 -14.16305 -13.87900 -13.70707 -13.62518 -13.35835 -12.94045 -12.32733 -12.22922 -12.07446 -11.87263 -11.59671 -11.38020 -11.27258 -11.06919 -10.99152 -10.80203 -10.65555 -10.55190 -10.44626 -10.07280 -9.57268 -8.83846 -8.38836 -8.10700 -7.54811 -5.99619 -4.03987 3.33810 3.39581 3.40937 3.52783 3.78215 4.33578 4.50051 4.71631 4.74158 4.94930 5.20473 5.22194 5.34653 5.39866 5.46841 5.52219 5.59763 5.67757 5.69744 5.80193 5.83617 5.88876 6.02416 6.08840 6.12422 6.20144 6.29325 6.55530 6.88009 7.11627 7.20499 7.52196 7.65492 7.98084 8.29941 8.55204 8.97003 9.27334 9.61306 11.08408 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028881 B = 0.007117 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.273589 B = 3933.540789 C = 4422.228809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.513 3.487 14 O -0.518 6.518 15 C 0.047 3.953 16 H 0.069 0.931 17 C -0.119 4.119 18 C -0.123 4.123 19 C 0.036 3.964 20 N -0.497 5.497 21 C 0.019 3.981 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.263 0.737 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -8.066 -13.848 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.298 3.702 14 O -0.392 6.392 15 C -0.065 4.065 16 H 0.087 0.913 17 C -0.157 4.157 18 C -0.161 4.161 19 C -0.092 4.092 20 N -0.221 5.221 21 C -0.129 4.129 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.865 -6.786 -13.514 16.220 hybrid contribution 0.962 -1.149 0.279 1.524 sum -4.903 -7.935 -13.235 16.192 Atomic orbital electron populations 1.22440 0.96959 1.01434 1.02922 1.21385 0.93514 0.84518 1.02272 1.48259 1.64474 1.13105 1.07631 1.19223 0.96092 0.93625 0.78176 1.21451 0.96999 1.31701 1.06128 0.92611 1.24930 0.97772 0.94997 0.96432 1.69937 1.35569 1.33582 1.14387 0.86517 0.84911 0.78585 0.77507 1.20556 1.21165 1.20002 1.20011 0.78819 0.87109 0.84291 1.90656 1.44155 1.17701 1.86721 1.22463 0.95138 0.96426 0.92505 0.91331 1.22462 0.94057 1.01033 0.98136 1.22489 0.96230 1.01692 0.95641 1.23243 0.92532 1.00072 0.93325 1.64322 1.02216 1.52154 1.03413 1.22514 0.91527 0.96301 1.02595 0.92093 0.92140 0.92398 0.92141 0.90170 0.93984 0.95149 0.92782 0.90750 0.90148 0.90997 0.90423 0.93985 0.89930 0.95778 0.91164 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 10.15 37.16 0.38 -2.06 16 2 C 0.11 1.78 5.86 -4.04 -0.02 1.75 16 3 N -0.60 -13.09 2.46 -175.05 -0.43 -13.52 16 4 C 0.25 6.65 5.16 -5.19 -0.03 6.62 16 5 C -0.52 -15.20 9.39 -34.44 -0.32 -15.53 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 9 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.51 11.23 6.71 -10.99 -0.07 11.16 16 14 O -0.52 -13.93 16.13 5.56 0.09 -13.84 16 15 C 0.05 0.76 2.08 -67.79 -0.14 0.62 16 16 H 0.07 1.02 5.99 -51.93 -0.31 0.71 16 17 C -0.12 -1.54 4.68 -25.37 -0.12 -1.66 16 18 C -0.12 -1.40 7.06 -24.87 -0.18 -1.58 16 19 C 0.04 0.43 6.56 -1.90 -0.01 0.42 16 20 N -0.50 -8.01 4.75 -232.17 -1.10 -9.11 16 21 C 0.02 0.27 9.40 60.06 0.56 0.84 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.77 4.36 -51.93 -0.23 0.54 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.85 5.98 -51.93 -0.31 0.54 16 26 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 27 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.07 0.77 7.78 -51.93 -0.40 0.37 16 31 H 0.08 1.16 6.48 -51.93 -0.34 0.82 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.44 7.96 -51.93 -0.41 0.02 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.29 8.01 -51.93 -0.42 -0.13 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -34.10 303.24 -7.36 -41.45 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.15 Total: -2.68 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.05 Total: 2.25 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.80 Total: -49.00 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.10 -7.36 -41.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428485186.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.921 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds