Wall clock time and date at job start Mon Mar 30 2020 17:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.28568 * 2 1 4 4 C 1.54378 * 110.32298 * 237.87206 * 2 1 3 5 5 N 1.48561 * 104.59206 * 217.24982 * 4 2 1 6 6 C 1.46911 * 110.99798 * 159.03915 * 5 4 2 7 7 C 1.48562 * 104.22317 * 39.48642 * 5 4 2 8 8 C 1.54256 * 110.32246 * 122.23452 * 2 1 3 9 9 H 1.09002 * 110.32529 * 237.79032 * 8 2 1 10 10 C 1.50700 * 110.32636 * 359.97438 * 8 2 1 11 11 O 1.21278 * 119.99503 * 87.02945 * 10 8 2 12 12 N 1.34768 * 120.00046 * 267.02849 * 10 8 2 13 13 C 1.46499 * 119.99981 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47373 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47438 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00006 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00132 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99923 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00098 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46963 * 89.99923 * 19 17 15 21 21 H 1.48501 * 109.46877 * 210.00154 * 19 17 15 22 22 H 1.48502 * 109.46903 * 329.99990 * 19 17 15 23 23 H 1.08996 * 109.46970 * 179.45359 * 1 2 3 24 24 H 1.09001 * 109.47084 * 299.45190 * 1 2 3 25 25 H 1.09001 * 109.46870 * 59.45212 * 1 2 3 26 26 H 1.08998 * 110.41294 * 336.02711 * 4 2 1 27 27 H 1.09001 * 110.41112 * 98.47120 * 4 2 1 28 28 H 1.08999 * 109.46722 * 59.99941 * 6 5 4 29 29 H 1.08994 * 109.47250 * 179.97438 * 6 5 4 30 30 H 1.08993 * 109.46930 * 299.99953 * 6 5 4 31 31 H 1.08992 * 110.41354 * 79.29244 * 7 5 4 32 32 H 1.08997 * 110.40696 * 201.73709 * 7 5 4 33 33 H 0.97005 * 120.00431 * 359.97438 * 12 10 8 34 34 H 1.09001 * 109.46963 * 299.99788 * 13 12 10 35 35 H 1.08998 * 109.47449 * 60.00134 * 13 12 10 36 36 H 1.09008 * 109.46997 * 300.00234 * 14 13 12 37 37 H 1.09003 * 109.47111 * 59.99960 * 14 13 12 38 38 H 0.96998 * 119.99701 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0662 -0.7699 -1.2260 5 7 3.2693 -1.4821 -0.7238 6 6 3.6068 -2.6203 -1.5893 7 6 2.8806 -1.9428 0.6340 8 6 2.0657 -0.7716 1.2236 9 1 2.7082 -0.1285 1.8252 10 6 0.9224 -1.2946 2.0543 11 8 0.4265 -2.3704 1.7942 12 7 0.4510 -0.5670 3.0861 13 6 -0.6601 -1.0758 3.8940 14 6 -0.9983 -0.0641 4.9909 15 6 -2.1418 -0.5872 5.8216 16 1 -2.5828 -1.5455 5.5906 17 6 -2.6241 0.1572 6.8771 18 7 -2.0866 1.3240 7.1587 19 14 -4.0419 -0.4909 7.9064 20 1 -3.5073 -1.2904 9.0377 21 1 -4.8312 0.6502 8.4358 22 1 -4.9143 -1.3475 7.0635 23 1 -0.3633 -1.0276 -0.0098 24 1 -0.3633 0.5053 0.8949 25 1 -0.3633 0.5223 -0.8850 26 1 1.3229 -1.4834 -1.5817 27 1 2.3393 -0.0760 -2.0210 28 1 3.8087 -2.2618 -2.5986 29 1 4.4914 -3.1236 -1.1992 30 1 2.7710 -3.3195 -1.6124 31 1 2.2648 -2.8397 0.5694 32 1 3.7670 -2.1319 1.2394 33 1 0.8479 0.2933 3.2944 34 1 -1.5324 -1.2268 3.2581 35 1 -0.3740 -2.0239 4.3494 36 1 -0.1261 0.0873 5.6269 37 1 -1.2847 0.8837 4.5352 38 1 -2.4261 1.8479 7.9011 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487023765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:51 Heat of formation + Delta-G solvation = -71.539500 kcal Electronic energy + Delta-G solvation = -17445.592185 eV Core-core repulsion = 14707.268741 eV Total energy + Delta-G solvation = -2738.323444 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54604 -39.11545 -36.56723 -34.89336 -34.37498 -31.76232 -30.81900 -28.07568 -26.94768 -25.59542 -23.31802 -22.44369 -22.10143 -20.43557 -18.59442 -17.96535 -17.32789 -16.74169 -16.48687 -16.27009 -15.69696 -15.51537 -15.01366 -14.79206 -14.39437 -14.23930 -13.65250 -13.45116 -13.26228 -13.21025 -12.92948 -12.58158 -12.51960 -12.40827 -12.24363 -12.12814 -11.84084 -11.70495 -11.57243 -11.44595 -10.72823 -10.61009 -10.00664 -9.56355 -8.24855 -6.35375 1.41229 1.41486 1.52957 1.63265 2.21737 2.43688 3.08223 3.09879 3.46256 3.58995 3.80598 4.09741 4.23975 4.32274 4.45767 4.47629 4.51402 4.52233 4.54028 4.69676 4.73671 4.77905 4.84346 4.93998 4.99372 5.01999 5.13554 5.27439 5.32830 5.49331 5.57684 5.72143 5.78279 5.96950 6.15646 6.63664 6.77839 7.28379 7.34053 8.86894 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057229 B = 0.004204 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.147482 B = 6659.511676 C = 6765.099038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.075 4.075 3 H 0.113 0.887 4 C 0.037 3.963 5 N -0.517 5.517 6 C 0.011 3.989 7 C 0.044 3.956 8 C -0.110 4.110 9 H 0.123 0.877 10 C 0.522 3.478 11 O -0.590 6.590 12 N -0.715 5.715 13 C 0.142 3.858 14 C 0.023 3.977 15 C -0.548 4.548 16 H 0.057 0.943 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.267 1.267 23 H 0.036 0.964 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.021 0.979 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.410 0.590 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.703 -1.487 -15.805 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.094 4.094 3 H 0.131 0.869 4 C -0.091 4.091 5 N -0.240 5.240 6 C -0.137 4.137 7 C -0.084 4.084 8 C -0.131 4.131 9 H 0.141 0.859 10 C 0.309 3.691 11 O -0.471 6.471 12 N -0.366 5.366 13 C 0.018 3.982 14 C -0.014 4.014 15 C -0.586 4.586 16 H 0.075 0.925 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.191 1.191 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.246 0.754 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.816 -1.769 -15.862 19.280 hybrid contribution -1.452 -0.514 0.950 1.809 sum 9.364 -2.283 -14.912 17.756 Atomic orbital electron populations 1.22002 0.95202 1.01309 1.02823 1.21849 0.95051 1.00561 0.91930 0.86850 1.23283 0.90856 0.97527 0.97457 1.65458 1.33010 1.23535 1.02006 1.22578 1.00690 0.92129 0.98312 1.23041 0.98522 0.95475 0.91381 1.22209 0.94663 0.99030 0.97242 0.85941 1.20881 0.84366 0.83935 0.79896 1.90634 1.61757 1.23983 1.70726 1.46202 1.35817 1.23423 1.31130 1.21183 0.87655 0.97326 0.92026 1.19126 0.95922 0.93917 0.92432 1.21464 1.17686 1.05075 1.14414 0.92486 1.25854 0.99697 0.95016 0.98497 1.70055 1.43234 1.13087 1.30124 0.85463 0.78895 0.78056 0.78748 1.19763 1.20435 1.19143 0.94500 0.92947 0.90143 0.94457 0.87689 0.89590 0.90365 0.96032 0.94036 0.88738 0.75369 0.93830 0.93816 0.97296 0.97229 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 7.93 71.98 0.57 -3.23 16 2 C -0.07 -1.54 3.65 -9.90 -0.04 -1.57 16 3 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.04 0.71 6.04 86.45 0.52 1.23 16 5 N -0.52 -10.60 5.66 -907.62 -5.14 -15.74 16 6 C 0.01 0.20 9.53 127.69 1.22 1.41 16 7 C 0.04 1.06 5.99 86.45 0.52 1.58 16 8 C -0.11 -2.62 3.44 -10.65 -0.04 -2.66 16 9 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 10 C 0.52 17.19 4.80 87.66 0.42 17.61 16 11 O -0.59 -24.21 14.91 -3.02 -0.05 -24.26 16 12 N -0.72 -24.51 5.17 -463.07 -2.39 -26.90 16 13 C 0.14 6.12 5.61 86.38 0.48 6.60 16 14 C 0.02 1.18 5.09 29.85 0.15 1.33 16 15 C -0.55 -30.69 9.11 25.60 0.23 -30.45 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 17 C 0.01 0.46 5.46 84.65 0.46 0.92 16 18 N -0.93 -54.11 13.29 21.45 0.28 -53.82 16 19 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H 0.04 1.11 6.88 -2.39 -0.02 1.09 16 24 H 0.05 1.41 7.32 -2.39 -0.02 1.39 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.04 0.81 7.68 -2.39 -0.02 0.79 16 27 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.02 0.41 7.97 -2.39 -0.02 0.39 16 31 H 0.04 1.22 6.64 -2.39 -0.02 1.20 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.41 12.00 8.47 -92.70 -0.79 11.22 16 34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -66.17 307.11 -0.52 -66.68 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.24 Total: 15.64 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 4.51 Total: -7.22 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -7.25 Total: -96.46 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -66.17 -0.52 -66.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487023765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.856 kcal (2) G-P(sol) polarization free energy of solvation -66.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds