Wall clock time and date at job start Mon Mar 30 2020 17:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46992 * 2 1 4 4 C 1.53001 * 109.46927 * 239.99782 * 2 1 3 5 5 C 1.50700 * 109.47123 * 62.46595 * 4 2 1 6 6 H 1.07999 * 119.99928 * 5.59776 * 5 4 2 7 7 C 1.37882 * 119.99630 * 185.60055 * 5 4 2 8 8 N 1.31509 * 120.00358 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99613 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47052 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46796 * 119.99768 * 9 7 5 12 12 H 1.48492 * 109.47210 * 239.99931 * 9 7 5 13 13 N 1.46897 * 109.47185 * 120.00037 * 2 1 3 14 14 C 1.46851 * 110.99948 * 300.59261 * 13 2 1 15 15 C 1.53033 * 109.52370 * 174.16379 * 14 13 2 16 16 C 1.53116 * 109.28428 * 59.17443 * 15 14 13 17 17 C 1.50696 * 109.52433 * 182.44194 * 16 15 14 18 18 N 1.34774 * 119.99810 * 180.02562 * 17 16 15 19 19 O 1.21278 * 120.00386 * 359.97438 * 17 16 15 20 20 C 1.53121 * 109.15647 * 302.34671 * 16 15 14 21 21 C 1.46846 * 111.00257 * 176.37890 * 13 2 1 22 22 H 1.09001 * 109.47125 * 60.00582 * 1 2 3 23 23 H 1.09004 * 109.46848 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46953 * 300.00009 * 1 2 3 25 25 H 1.09001 * 109.47010 * 182.46388 * 4 2 1 26 26 H 1.08997 * 109.47518 * 302.45972 * 4 2 1 27 27 H 0.97001 * 120.00020 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.46348 * 54.14147 * 14 13 2 29 29 H 1.09000 * 109.44805 * 294.16918 * 14 13 2 30 30 H 1.08999 * 109.50425 * 299.22984 * 15 14 13 31 31 H 1.09002 * 109.50074 * 179.11477 * 15 14 13 32 32 H 1.09002 * 109.52186 * 62.24747 * 16 15 14 33 33 H 0.97000 * 120.00513 * 359.97438 * 18 17 16 34 34 H 0.97004 * 120.00188 * 179.97438 * 18 17 16 35 35 H 1.09007 * 109.49788 * 177.59360 * 20 16 15 36 36 H 1.08998 * 109.50576 * 297.71097 * 20 16 15 37 37 H 1.09001 * 109.46204 * 305.85033 * 21 13 2 38 38 H 1.08993 * 109.45943 * 65.81948 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5882 0.0235 -2.4790 6 1 1.0748 0.9685 -2.3797 7 6 1.8302 -0.5016 -3.7307 8 7 2.4557 -1.6521 -3.8515 9 14 1.2695 0.4212 -5.2550 10 1 0.5951 1.6810 -4.8508 11 1 2.4472 0.7403 -6.1015 12 1 0.3212 -0.4237 -6.0243 13 7 2.0197 -0.6925 1.1994 14 6 1.5373 -0.0348 2.4206 15 6 1.9435 -0.8627 3.6419 16 6 3.4686 -0.9943 3.6790 17 6 3.8712 -1.8587 4.8459 18 7 5.1742 -2.1138 5.0776 19 8 3.0229 -2.3240 5.5771 20 6 3.9493 -1.6379 2.3755 21 6 3.4851 -0.7875 1.1909 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.1291 -0.7597 -1.2274 26 1 1.6411 -1.7354 -1.2716 27 1 2.6256 -2.0217 -4.7321 28 1 0.4512 0.0487 2.3833 29 1 1.9758 0.9604 2.4943 30 1 1.4943 -1.8535 3.5757 31 1 1.5990 -0.3661 4.5490 32 1 3.9170 -0.0063 3.7845 33 1 5.8528 -1.7414 4.4930 34 1 5.4334 -2.6699 5.8289 35 1 5.0378 -1.6953 2.3779 36 1 3.5316 -2.6410 2.2893 37 1 3.8136 -1.2508 0.2605 38 1 3.9142 0.2112 1.2704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578073732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:42 Heat of formation + Delta-G solvation = -80.204140 kcal Electronic energy + Delta-G solvation = -17729.911464 eV Core-core repulsion = 14991.212293 eV Total energy + Delta-G solvation = -2738.699171 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12809 -39.52733 -36.31446 -34.80590 -34.27081 -31.91271 -31.56454 -28.75583 -26.43992 -25.22202 -23.49868 -22.16159 -20.79597 -20.50425 -18.75029 -18.30417 -17.61353 -16.73006 -16.54777 -15.91766 -15.74414 -15.29242 -15.07652 -14.59378 -14.40489 -14.22569 -13.96976 -13.54160 -13.14289 -12.99193 -12.69604 -12.51564 -12.28538 -12.21356 -12.06316 -11.91580 -11.55562 -11.47794 -11.12077 -10.87909 -10.77678 -10.61470 -10.46758 -9.07203 -8.15838 -6.24592 1.41258 1.42402 1.54605 1.64509 2.42805 2.63599 3.08965 3.18188 3.69518 3.82880 3.96905 4.23642 4.32802 4.35459 4.41982 4.53905 4.59111 4.67833 4.71658 4.81415 4.95317 5.01762 5.07126 5.19469 5.20401 5.28252 5.39050 5.46602 5.53551 5.76868 5.83192 5.93744 6.18314 6.43368 6.44981 6.47784 6.91766 7.37434 7.43355 8.96462 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046768 B = 0.004955 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.556580 B = 5649.809932 C = 6042.454962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.096 3.904 3 H 0.023 0.977 4 C 0.039 3.961 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.959 3.041 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.281 1.281 13 N -0.549 5.549 14 C 0.054 3.946 15 C -0.090 4.090 16 C -0.103 4.103 17 C 0.524 3.476 18 N -0.836 5.836 19 O -0.592 6.592 20 C -0.095 4.095 21 C 0.053 3.947 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.065 0.935 25 H -0.003 1.003 26 H -0.008 1.008 27 H 0.262 0.738 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.417 0.583 34 H 0.407 0.593 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 3.500 15.107 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.012 4.012 3 H 0.041 0.959 4 C 0.002 3.998 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.784 3.216 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.207 1.207 13 N -0.275 5.275 14 C -0.074 4.074 15 C -0.128 4.128 16 C -0.124 4.124 17 C 0.310 3.690 18 N -0.400 5.400 19 O -0.472 6.472 20 C -0.133 4.133 21 C -0.075 4.075 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.015 0.985 26 H 0.010 0.990 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.249 0.751 34 H 0.238 0.762 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.890 2.711 15.335 16.323 hybrid contribution 0.528 0.734 -1.119 1.438 sum 5.418 3.445 14.217 15.599 Atomic orbital electron populations 1.21686 0.94286 1.01172 1.01005 1.21515 0.95865 0.94257 0.89545 0.95881 1.19032 0.94606 0.94738 0.91422 1.21620 1.36892 1.06383 0.91926 0.92148 1.25876 0.95386 0.95782 1.02467 1.70108 1.43084 1.19935 1.24199 0.85484 0.78043 0.78913 0.79120 1.18553 1.20546 1.20714 1.61947 1.10227 1.53273 1.02022 1.22180 1.00976 0.95265 0.88958 1.21321 0.93797 1.00674 0.96991 1.21384 0.98119 1.00233 0.92686 1.20791 0.82988 0.79973 0.85253 1.43730 1.07046 1.54654 1.34536 1.90713 1.51883 1.53961 1.50669 1.21526 1.01634 0.98803 0.91300 1.22098 0.87641 0.98826 0.98925 0.92797 0.93854 0.91663 0.98471 0.99001 0.92963 0.90098 0.94338 0.92689 0.90417 0.86317 0.75140 0.76167 0.88149 0.92479 0.91925 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 8.74 71.98 0.63 -4.10 16 2 C 0.10 3.96 2.13 44.92 0.10 4.06 16 3 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 4 C 0.04 2.05 4.22 29.85 0.13 2.18 16 5 C -0.53 -29.50 8.27 25.60 0.21 -29.29 16 6 H 0.06 3.23 7.10 -2.91 -0.02 3.21 16 7 C 0.00 0.14 5.46 84.66 0.46 0.60 16 8 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 9 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.55 -19.38 4.53 -871.13 -3.94 -23.32 16 14 C 0.05 1.52 5.21 86.32 0.45 1.97 16 15 C -0.09 -2.33 4.68 30.64 0.14 -2.19 16 16 C -0.10 -2.21 2.59 -11.46 -0.03 -2.24 16 17 C 0.52 11.78 7.43 87.66 0.65 12.43 16 18 N -0.84 -11.01 8.78 -173.54 -1.52 -12.54 16 19 O -0.59 -18.81 16.81 -3.02 -0.05 -18.86 16 20 C -0.09 -2.24 5.26 30.65 0.16 -2.08 16 21 C 0.05 1.67 5.15 86.33 0.44 2.12 16 22 H 0.05 2.16 6.90 -2.39 -0.02 2.15 16 23 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.06 2.03 6.27 -2.39 -0.01 2.02 16 25 H 0.00 -0.16 6.09 -2.39 -0.01 -0.17 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.08 2.26 5.99 -2.39 -0.01 2.24 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.69 8.04 -2.39 -0.02 1.68 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.42 2.98 8.32 -92.71 -0.77 2.21 16 34 H 0.41 4.51 8.93 -92.71 -0.83 3.68 16 35 H 0.10 1.67 7.67 -2.38 -0.02 1.65 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.06 2.38 5.86 -2.39 -0.01 2.37 16 38 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -70.76 298.00 -0.40 -71.16 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -0.54 Total: 10.30 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 3.34 Total: -16.54 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -5.18 Total: -92.00 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.76 -0.40 -71.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578073732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.042 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds