Wall clock time and date at job start Mon Mar 30 2020 17:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21281 * 120.00346 * 2 1 4 4 N 1.34787 * 119.99884 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00056 * 179.97438 * 4 2 1 6 6 H 1.09003 * 110.87314 * 37.39492 * 5 4 2 7 7 C 1.55140 * 110.99297 * 273.54794 * 5 4 2 8 8 C 1.54316 * 103.01777 * 206.25366 * 7 5 4 9 9 N 1.47446 * 107.23419 * 22.28738 * 8 7 5 10 10 C 1.46901 * 111.00112 * 123.25379 * 9 8 7 11 11 H 1.09003 * 109.47046 * 185.91783 * 10 9 8 12 12 C 1.52999 * 109.47237 * 305.92087 * 10 9 8 13 13 C 1.53000 * 109.46787 * 65.92327 * 10 9 8 14 14 C 1.50699 * 109.47765 * 64.99910 * 13 10 9 15 15 H 1.08000 * 119.99373 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00296 * 180.02562 * 14 13 10 17 17 N 1.31520 * 119.99800 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99922 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47408 * 89.99508 * 18 16 14 20 20 H 1.48502 * 109.46640 * 209.99731 * 18 16 14 21 21 H 1.48503 * 109.47127 * 329.99155 * 18 16 14 22 22 C 1.47842 * 108.56559 * 0.98443 * 9 8 7 23 23 H 1.08999 * 109.47004 * 270.00355 * 1 2 3 24 24 H 1.08996 * 109.46515 * 29.99490 * 1 2 3 25 25 H 1.09000 * 109.47283 * 149.99771 * 1 2 3 26 26 H 0.97002 * 119.99593 * 0.02562 * 4 2 1 27 27 H 1.09002 * 110.70404 * 87.87428 * 7 5 4 28 28 H 1.08999 * 110.70658 * 324.63959 * 7 5 4 29 29 H 1.08994 * 109.89172 * 262.87845 * 8 7 5 30 30 H 1.09002 * 110.02348 * 141.76682 * 8 7 5 31 31 H 1.09004 * 109.46689 * 306.57412 * 12 10 9 32 32 H 1.08997 * 109.46850 * 186.57297 * 12 10 9 33 33 H 1.08995 * 109.47130 * 66.57228 * 12 10 9 34 34 H 1.09007 * 109.46767 * 185.00114 * 13 10 9 35 35 H 1.09007 * 109.47352 * 304.99160 * 13 10 9 36 36 H 0.96998 * 119.99397 * 179.97438 * 17 16 14 37 37 H 1.09002 * 110.37466 * 94.73764 * 22 9 8 38 38 H 1.09007 * 110.37323 * 217.07767 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 1 4.0345 -0.3583 0.6175 7 6 4.2011 -1.0774 -1.4469 8 6 5.5846 -1.7511 -1.3305 9 7 5.5470 -2.6236 -0.1426 10 6 5.8767 -4.0105 -0.4974 11 1 5.7397 -4.6509 0.3740 12 6 4.9565 -4.4808 -1.6256 13 6 7.3326 -4.0858 -0.9617 14 6 8.2448 -3.7405 0.1870 15 1 7.8278 -3.4919 1.1517 16 6 9.6117 -3.7411 0.0062 17 7 10.1194 -4.0435 -1.1688 18 14 10.7424 -3.3138 1.4304 19 1 11.0900 -4.5508 2.1748 20 1 11.9823 -2.6862 0.9068 21 1 10.0539 -2.3646 2.3415 22 6 4.2009 -2.5372 0.4626 23 1 -0.3633 0.0001 1.0277 24 1 -0.3632 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 1.6958 -2.0073 -0.0013 27 1 4.3038 -0.0373 -1.7563 28 1 3.5626 -1.6254 -2.1398 29 1 6.3575 -0.9923 -1.2090 30 1 5.7861 -2.3460 -2.2214 31 1 3.9176 -4.3179 -1.3389 32 1 5.1205 -5.5426 -1.8094 33 1 5.1759 -3.9170 -2.5323 34 1 7.5515 -5.0957 -1.3087 35 1 7.4911 -3.3793 -1.7766 36 1 11.0810 -4.0435 -1.2961 37 1 3.5681 -3.3462 0.0976 38 1 4.2708 -2.5700 1.5499 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583148890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:48 Heat of formation + Delta-G solvation = -62.634134 kcal Electronic energy + Delta-G solvation = -17714.446619 eV Core-core repulsion = 14976.509341 eV Total energy + Delta-G solvation = -2737.937278 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12722 -39.85274 -36.41158 -34.85801 -33.48461 -30.87409 -30.32868 -29.10567 -28.26498 -25.13247 -23.27791 -22.26116 -21.59810 -20.09215 -18.36479 -18.00128 -17.72355 -16.52349 -16.38592 -16.27379 -15.98550 -14.99092 -14.65375 -14.59260 -14.38828 -13.71862 -13.54462 -13.40009 -13.25824 -13.08190 -12.86431 -12.71831 -12.59720 -12.45192 -12.37358 -12.29934 -11.74119 -11.63973 -11.12146 -11.05016 -10.94300 -10.48017 -10.09533 -8.95065 -8.10083 -6.14780 1.41340 1.42911 1.54161 1.65946 2.19718 2.47643 3.19819 3.30405 3.60127 3.73465 3.98264 4.06725 4.20482 4.35776 4.41331 4.45607 4.53907 4.58583 4.65646 4.70586 4.84424 4.96167 4.99004 5.03315 5.11276 5.20765 5.26494 5.30965 5.46464 5.51086 5.71562 5.90302 6.27390 6.33010 6.50721 6.61608 6.99583 7.30095 7.51332 9.01889 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037262 B = 0.005240 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.261586 B = 5342.599536 C = 5676.030843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.503 3.497 3 O -0.603 6.603 4 N -0.707 5.707 5 C 0.143 3.857 6 H 0.073 0.927 7 C -0.136 4.136 8 C 0.049 3.951 9 N -0.525 5.525 10 C 0.090 3.910 11 H 0.069 0.931 12 C -0.174 4.174 13 C 0.035 3.965 14 C -0.502 4.502 15 H 0.057 0.943 16 C -0.005 4.005 17 N -0.940 5.940 18 Si 0.955 3.045 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.269 1.269 22 C 0.041 3.959 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.418 0.582 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.049 0.951 34 H -0.006 1.006 35 H -0.007 1.007 36 H 0.258 0.742 37 H 0.075 0.925 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.152 2.177 1.284 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.292 3.708 3 O -0.485 6.485 4 N -0.359 5.359 5 C 0.036 3.964 6 H 0.092 0.908 7 C -0.176 4.176 8 C -0.079 4.079 9 N -0.249 5.249 10 C -0.019 4.019 11 H 0.087 0.913 12 C -0.233 4.233 13 C -0.002 4.002 14 C -0.540 4.540 15 H 0.076 0.924 16 C -0.201 4.201 17 N -0.582 5.582 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.194 1.194 22 C -0.087 4.087 23 H 0.129 0.871 24 H 0.110 0.890 25 H 0.129 0.871 26 H 0.256 0.744 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.199 3.044 1.579 20.488 hybrid contribution 0.670 -0.379 -0.187 0.792 sum -19.529 2.665 1.392 19.759 Atomic orbital electron populations 1.21892 0.87586 1.06291 1.06294 1.21746 0.92457 0.82691 0.73911 1.90721 1.72297 1.33434 1.52018 1.45919 1.05823 1.09608 1.74585 1.21808 0.80544 0.98019 0.96013 0.90840 1.23040 0.96104 1.01031 0.97377 1.22622 0.96441 0.95869 0.92958 1.63570 1.25985 1.08436 1.26944 1.21761 0.95363 0.88073 0.96668 0.91254 1.22424 0.99992 1.01662 0.99174 1.19050 0.91295 0.94552 0.95300 1.21525 0.91225 1.43617 0.97635 0.92435 1.25842 1.00175 0.96068 0.97998 1.70091 1.12137 1.51668 1.24349 0.85594 0.78126 0.78469 0.79712 1.19897 1.21352 1.19399 1.23251 0.89479 0.95471 1.00464 0.87099 0.89049 0.87134 0.74367 0.91703 0.89737 0.93419 0.92488 0.90660 0.92138 0.93187 0.98763 0.98822 0.93298 0.90677 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.30 71.24 0.73 -0.88 16 2 C 0.50 10.67 7.94 87.66 0.70 11.37 16 3 O -0.60 -19.84 16.84 -3.03 -0.05 -19.89 16 4 N -0.71 -13.01 5.23 -435.99 -2.28 -15.29 16 5 C 0.14 3.72 3.31 46.38 0.15 3.88 16 6 H 0.07 2.36 7.73 -2.39 -0.02 2.34 16 7 C -0.14 -3.80 6.64 31.77 0.21 -3.59 16 8 C 0.05 1.76 5.57 86.64 0.48 2.24 16 9 N -0.53 -19.32 4.87 -860.37 -4.19 -23.51 16 10 C 0.09 3.50 2.22 44.91 0.10 3.60 16 11 H 0.07 2.71 8.12 -2.39 -0.02 2.69 16 12 C -0.17 -5.29 8.56 71.98 0.62 -4.67 16 13 C 0.04 1.82 4.36 29.85 0.13 1.95 16 14 C -0.50 -28.69 8.84 25.60 0.23 -28.47 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 18 Si 0.95 46.08 29.54 68.60 2.03 48.11 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 22 C 0.04 1.11 6.10 86.77 0.53 1.63 16 23 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.42 4.50 8.52 -92.71 -0.79 3.71 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 2.11 4.83 -2.39 -0.01 2.10 16 31 H 0.07 1.77 6.19 -2.38 -0.01 1.76 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.58 6.25 -2.39 -0.01 1.56 16 34 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 35 H -0.01 -0.37 6.76 -2.38 -0.02 -0.38 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.08 1.61 5.79 -2.39 -0.01 1.59 16 38 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -74.04 303.89 0.38 -73.65 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.25 Total: 7.62 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.34 Total: -12.77 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -6.19 Total: -96.72 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -74.04 0.38 -73.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583148890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.019 kcal (2) G-P(sol) polarization free energy of solvation -74.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds