Wall clock time and date at job start Mon Mar 30 2020 17:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21277 * 119.99608 * 2 1 4 4 N 1.34771 * 119.99952 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99928 * 180.02562 * 4 2 1 6 6 H 1.08996 * 110.78672 * 323.21437 * 5 4 2 7 7 C 1.54602 * 110.72119 * 86.45998 * 5 4 2 8 8 C 1.53988 * 105.14143 * 140.31593 * 7 5 4 9 9 N 1.47907 * 107.05522 * 1.22458 * 8 7 5 10 10 C 1.46898 * 110.99563 * 214.15350 * 9 8 7 11 11 H 1.09005 * 109.47158 * 183.73998 * 10 9 8 12 12 C 1.53000 * 109.47257 * 63.74396 * 10 9 8 13 13 C 1.53000 * 109.47550 * 303.74083 * 10 9 8 14 14 C 1.50697 * 109.46892 * 295.33686 * 13 10 9 15 15 H 1.08001 * 120.00250 * 355.00111 * 14 13 10 16 16 C 1.37878 * 120.00169 * 175.00581 * 14 13 10 17 17 N 1.31521 * 119.99625 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00502 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46926 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47207 * 119.99711 * 18 16 14 21 21 H 1.48506 * 109.47032 * 240.00093 * 18 16 14 22 22 C 1.48533 * 105.82130 * 334.66721 * 9 8 7 23 23 H 1.08997 * 109.47710 * 270.00452 * 1 2 3 24 24 H 1.08999 * 109.47080 * 30.00863 * 1 2 3 25 25 H 1.09003 * 109.46530 * 150.00503 * 1 2 3 26 26 H 0.97001 * 120.00231 * 0.02562 * 4 2 1 27 27 H 1.09001 * 110.30609 * 21.39487 * 7 5 4 28 28 H 1.09005 * 110.30448 * 259.23311 * 7 5 4 29 29 H 1.08999 * 109.91809 * 241.87414 * 8 7 5 30 30 H 1.08996 * 109.91764 * 120.57482 * 8 7 5 31 31 H 1.09002 * 109.47368 * 186.80332 * 12 10 9 32 32 H 1.08997 * 109.46782 * 306.79902 * 12 10 9 33 33 H 1.09006 * 109.47443 * 66.79764 * 12 10 9 34 34 H 1.08996 * 109.47139 * 55.33449 * 13 10 9 35 35 H 1.09001 * 109.46985 * 175.34003 * 13 10 9 36 36 H 0.97000 * 119.99715 * 180.02562 * 17 16 14 37 37 H 1.08998 * 110.66542 * 157.64342 * 22 9 8 38 38 H 1.08996 * 110.66489 * 280.77548 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0330 -0.3512 -0.6092 7 6 4.1924 -1.0775 1.4445 8 6 5.4046 -2.0266 1.4753 9 7 5.5477 -2.5919 0.1160 10 6 6.0371 -3.9759 0.1704 11 1 6.1964 -4.3450 -0.8429 12 6 5.0031 -4.8551 0.8766 13 6 7.3571 -4.0202 0.9427 14 6 8.4074 -3.2477 0.1870 15 1 8.1819 -2.8413 -0.7878 16 6 9.6564 -3.0600 0.7401 17 7 9.9309 -3.5546 1.9274 18 14 10.9581 -2.1019 -0.1963 19 1 10.4021 -1.6540 -1.4984 20 1 11.3699 -0.9181 0.6000 21 1 12.1373 -2.9724 -0.4352 22 6 4.1944 -2.5293 -0.4930 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3632 -0.8901 -0.5138 26 1 1.6959 -2.0072 0.0005 27 1 3.4357 -1.4069 2.1566 28 1 4.5048 -0.0574 1.6681 29 1 5.2311 -2.8275 2.1941 30 1 6.3038 -1.4719 1.7433 31 1 5.4154 -5.8533 1.0247 32 1 4.7541 -4.4178 1.8434 33 1 4.1033 -4.9208 0.2649 34 1 7.2169 -3.5748 1.9276 35 1 7.6779 -5.0559 1.0546 36 1 10.8094 -3.4222 2.3166 37 1 4.2610 -2.5454 -1.5808 38 1 3.5721 -3.3483 -0.1324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583148891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:51 Heat of formation + Delta-G solvation = -36.700509 kcal Electronic energy + Delta-G solvation = -17736.936845 eV Core-core repulsion = 15000.124134 eV Total energy + Delta-G solvation = -2736.812712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96583 -38.57130 -35.09564 -33.10330 -31.93757 -30.00116 -28.85911 -27.35683 -26.99860 -23.31660 -21.86301 -21.04744 -20.43553 -18.51101 -16.97513 -16.57657 -16.19111 -15.35235 -14.92214 -14.88468 -14.40266 -13.68562 -13.56432 -13.22180 -12.93310 -12.60030 -12.54076 -11.88688 -11.82011 -11.67274 -11.48166 -11.26887 -11.00924 -10.91384 -10.65832 -10.39693 -10.26996 -9.99152 -9.90667 -9.20391 -9.05669 -8.96962 -8.26902 -7.60980 -5.89648 -3.87866 2.58184 3.14684 3.39276 3.46943 3.53017 4.55840 4.59091 4.75325 4.83781 5.02664 5.06375 5.19113 5.32864 5.47639 5.48635 5.58283 5.68999 5.78432 5.84142 5.92552 5.94938 6.07072 6.19443 6.31886 6.45660 6.52641 6.65934 6.77973 6.91449 7.42022 7.49206 7.58503 7.78688 7.94595 8.11068 8.18101 8.55362 9.18487 9.74522 11.22214 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033773 B = 0.005487 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.869326 B = 5102.102807 C = 5546.691818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.508 3.492 3 O -0.546 6.546 4 N -0.723 5.723 5 C 0.139 3.861 6 H 0.100 0.900 7 C -0.140 4.140 8 C 0.042 3.958 9 N -0.483 5.483 10 C 0.077 3.923 11 H 0.072 0.928 12 C -0.187 4.187 13 C 0.026 3.974 14 C -0.492 4.492 15 H 0.061 0.939 16 C 0.051 3.949 17 N -0.903 5.903 18 Si 0.889 3.111 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.288 1.288 22 C 0.020 3.980 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.398 0.602 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.024 0.976 35 H 0.016 0.984 36 H 0.257 0.743 37 H 0.080 0.920 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.367 1.130 -2.355 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.294 3.706 3 O -0.423 6.423 4 N -0.374 5.374 5 C 0.034 3.966 6 H 0.118 0.882 7 C -0.179 4.179 8 C -0.086 4.086 9 N -0.207 5.207 10 C -0.032 4.032 11 H 0.091 0.909 12 C -0.245 4.245 13 C -0.011 4.011 14 C -0.531 4.531 15 H 0.079 0.921 16 C -0.148 4.148 17 N -0.544 5.544 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.214 1.214 22 C -0.108 4.108 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.232 0.768 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.387 2.176 -2.551 17.707 hybrid contribution -0.005 -0.478 0.150 0.501 sum -17.392 1.698 -2.400 17.639 Atomic orbital electron populations 1.21884 0.92007 1.04696 1.04608 1.20789 0.90458 0.83672 0.75634 1.90737 1.70790 1.31388 1.49398 1.46156 1.07465 1.08529 1.75298 1.21930 0.78220 0.99214 0.97219 0.88227 1.22836 0.97834 1.01093 0.96141 1.22807 0.97708 0.96853 0.91250 1.64991 1.18785 1.19979 1.16945 1.22052 0.96090 0.84990 1.00037 0.90947 1.22557 0.99784 1.01486 1.00713 1.19242 0.89312 0.97028 0.95480 1.21208 0.95775 1.32546 1.03569 0.92065 1.24999 0.98599 0.96188 0.95008 1.69976 1.21707 1.46606 1.16137 0.86570 0.81683 0.79750 0.80211 1.19707 1.21271 1.21403 1.23527 0.92107 0.94694 1.00511 0.89018 0.89020 0.90317 0.76776 0.91956 0.90883 0.93392 0.89442 0.92278 0.92852 0.93798 0.95792 0.96598 0.93358 0.90167 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.30 36.01 0.37 -0.84 16 2 C 0.51 6.07 7.94 -10.99 -0.09 5.98 16 3 O -0.55 -9.25 16.83 5.56 0.09 -9.16 16 4 N -0.72 -7.86 5.14 -52.00 -0.27 -8.13 16 5 C 0.14 1.97 3.34 -66.06 -0.22 1.75 16 6 H 0.10 1.64 7.70 -51.93 -0.40 1.24 16 7 C -0.14 -2.12 6.67 -25.37 -0.17 -2.29 16 8 C 0.04 0.76 5.04 -2.75 -0.01 0.74 16 9 N -0.48 -9.06 5.06 -222.51 -1.13 -10.18 16 10 C 0.08 1.52 2.47 -67.71 -0.17 1.35 16 11 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 12 C -0.19 -3.02 8.35 37.16 0.31 -2.71 16 13 C 0.03 0.66 4.24 -27.88 -0.12 0.54 16 14 C -0.49 -13.77 8.83 -34.44 -0.30 -14.07 16 15 H 0.06 1.72 7.75 -52.49 -0.41 1.32 16 16 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 17 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 18 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 C 0.02 0.29 5.95 -1.90 -0.01 0.28 16 23 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.40 3.09 8.53 -40.82 -0.35 2.74 16 27 H 0.06 0.85 8.05 -51.93 -0.42 0.44 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.86 5.30 -51.93 -0.28 0.59 16 30 H 0.09 1.83 8.12 -51.93 -0.42 1.41 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.86 6.00 -51.93 -0.31 0.55 16 33 H 0.04 0.60 6.35 -51.93 -0.33 0.27 16 34 H 0.02 0.64 6.67 -51.93 -0.35 0.29 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.63 5.44 -51.93 -0.28 0.35 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -32.74 303.11 -7.58 -40.32 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.06 Total: -0.28 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.51 Total: -7.88 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.66 Total: -44.74 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.74 -7.58 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583148891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.617 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds