Wall clock time and date at job start Mon Mar 30 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 120.00337 * 2 1 4 4 N 1.34772 * 119.99749 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99941 * 179.97438 * 4 2 1 6 6 H 1.09000 * 110.90155 * 37.41392 * 5 4 2 7 7 C 1.55141 * 110.99435 * 273.54862 * 5 4 2 8 8 C 1.54314 * 103.01921 * 206.25571 * 7 5 4 9 9 N 1.47445 * 107.23608 * 22.28104 * 8 7 5 10 10 C 1.46898 * 110.99920 * 123.25852 * 9 8 7 11 11 H 1.08999 * 109.47616 * 56.29409 * 10 9 8 12 12 C 1.52999 * 109.47420 * 296.29041 * 10 9 8 13 13 C 1.53004 * 109.47136 * 176.29322 * 10 9 8 14 14 C 1.50702 * 109.46781 * 295.60829 * 13 10 9 15 15 H 1.08000 * 120.00195 * 355.11289 * 14 13 10 16 16 C 1.37883 * 119.99898 * 175.11514 * 14 13 10 17 17 N 1.31513 * 119.99900 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00027 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46816 * 60.00469 * 18 16 14 20 20 H 1.48498 * 109.46956 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47525 * 300.00418 * 18 16 14 22 22 C 1.47842 * 108.56664 * 0.98971 * 9 8 7 23 23 H 1.08999 * 109.47449 * 240.00329 * 1 2 3 24 24 H 1.09011 * 109.46969 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47241 * 119.99672 * 1 2 3 26 26 H 0.97001 * 120.00419 * 0.02562 * 4 2 1 27 27 H 1.08995 * 110.70903 * 87.87091 * 7 5 4 28 28 H 1.09006 * 110.70206 * 324.63747 * 7 5 4 29 29 H 1.09001 * 109.89183 * 262.87348 * 8 7 5 30 30 H 1.09004 * 110.02250 * 141.76461 * 8 7 5 31 31 H 1.09004 * 109.47204 * 293.40714 * 12 10 9 32 32 H 1.09000 * 109.47021 * 53.40150 * 12 10 9 33 33 H 1.08996 * 109.47528 * 173.40809 * 12 10 9 34 34 H 1.09000 * 109.47012 * 55.60214 * 13 10 9 35 35 H 1.08995 * 109.47479 * 175.60873 * 13 10 9 36 36 H 0.97001 * 120.00274 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.37463 * 94.73401 * 22 9 8 38 38 H 1.08994 * 110.37714 * 217.07521 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0349 -0.3581 0.6179 7 6 4.2011 -1.0786 -1.4460 8 6 5.5845 -1.7522 -1.3290 9 7 5.5470 -2.6236 -0.1402 10 6 5.8767 -4.0108 -0.4937 11 1 6.8504 -4.0395 -0.9829 12 6 4.8120 -4.5618 -1.4443 13 6 5.9182 -4.8644 0.7753 14 6 7.0385 -4.3888 1.6642 15 1 7.7079 -3.6137 1.3214 16 6 7.2088 -4.9433 2.9150 17 7 6.3940 -5.8875 3.3323 18 14 8.5978 -4.3543 4.0165 19 1 8.4339 -2.9033 4.2866 20 1 8.5648 -5.1037 5.2981 21 1 9.8989 -4.5881 3.3403 22 6 4.2009 -2.5367 0.4649 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3633 1.0278 -0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 1.6958 -2.0072 0.0005 27 1 4.3037 -0.0388 -1.7563 28 1 3.5625 -1.6273 -2.1383 29 1 6.3575 -0.9932 -1.2082 30 1 5.7860 -2.3479 -2.2193 31 1 3.8612 -4.6427 -0.9173 32 1 4.7001 -3.8883 -2.2941 33 1 5.1159 -5.5467 -1.7987 34 1 4.9702 -4.7735 1.3055 35 1 6.0856 -5.9074 0.5064 36 1 6.5140 -6.2779 4.2121 37 1 3.5681 -3.3461 0.1007 38 1 4.2708 -2.5685 1.5521 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583148892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:53 Heat of formation + Delta-G solvation = -63.019053 kcal Electronic energy + Delta-G solvation = -17828.967863 eV Core-core repulsion = 15091.013894 eV Total energy + Delta-G solvation = -2737.953969 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13142 -39.84400 -36.35330 -34.90274 -33.52896 -31.02427 -29.78217 -29.29808 -28.44971 -25.15077 -23.13395 -22.35329 -21.47510 -20.21678 -18.35810 -17.96307 -17.75109 -16.55719 -16.46981 -16.05116 -15.76335 -15.35395 -14.68562 -14.49414 -14.21803 -13.95110 -13.46380 -13.40533 -13.32187 -13.03932 -12.81841 -12.73279 -12.61878 -12.48957 -12.31827 -12.24233 -11.81962 -11.61846 -11.14086 -11.01558 -10.94336 -10.47320 -10.10269 -8.94243 -8.09892 -6.13971 1.41903 1.44144 1.51511 1.65055 2.19609 2.47673 3.20252 3.32229 3.61017 3.73121 3.96973 4.07974 4.20238 4.36236 4.40785 4.45823 4.56280 4.58667 4.68009 4.69691 4.87936 4.93561 4.98435 5.07382 5.13173 5.16548 5.25733 5.30968 5.45857 5.51743 5.71640 5.90091 6.28379 6.33174 6.50763 6.59410 6.99222 7.27186 7.51684 9.01591 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026455 B = 0.005953 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.143659 B = 4702.126678 C = 5045.530272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.601 6.601 4 N -0.711 5.711 5 C 0.140 3.860 6 H 0.071 0.929 7 C -0.134 4.134 8 C 0.041 3.959 9 N -0.526 5.526 10 C 0.088 3.912 11 H 0.065 0.935 12 C -0.174 4.174 13 C 0.036 3.964 14 C -0.502 4.502 15 H 0.054 0.946 16 C -0.001 4.001 17 N -0.937 5.937 18 Si 0.952 3.048 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.270 1.270 22 C 0.052 3.948 23 H 0.109 0.891 24 H 0.090 0.910 25 H 0.114 0.886 26 H 0.416 0.584 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.001 0.999 35 H -0.008 1.008 36 H 0.259 0.741 37 H 0.066 0.934 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.750 6.996 -10.373 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.293 3.707 3 O -0.482 6.482 4 N -0.363 5.363 5 C 0.033 3.967 6 H 0.090 0.910 7 C -0.173 4.173 8 C -0.087 4.087 9 N -0.250 5.250 10 C -0.020 4.020 11 H 0.083 0.917 12 C -0.233 4.233 13 C -0.001 4.001 14 C -0.541 4.541 15 H 0.072 0.928 16 C -0.197 4.197 17 N -0.580 5.580 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.195 1.195 22 C -0.076 4.076 23 H 0.127 0.873 24 H 0.108 0.892 25 H 0.133 0.867 26 H 0.253 0.747 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.020 0.980 35 H 0.011 0.989 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.966 7.779 -9.866 16.677 hybrid contribution 0.201 -0.654 0.487 0.840 sum -10.764 7.126 -9.379 15.957 Atomic orbital electron populations 1.21928 0.87662 1.06148 1.06522 1.21706 0.92437 0.82602 0.73938 1.90700 1.72313 1.33206 1.52016 1.45932 1.06087 1.09614 1.74643 1.21874 0.80480 0.97401 0.96912 0.91048 1.23013 0.96538 1.01528 0.96263 1.22834 0.97006 0.96236 0.92594 1.63546 1.26490 1.08625 1.26303 1.21807 0.97464 0.87295 0.95432 0.91716 1.22417 0.99694 1.01727 0.99429 1.19038 0.95880 0.93063 0.92132 1.21463 1.13423 1.18965 1.00211 0.92813 1.25774 0.98745 0.95553 0.99658 1.70063 1.39651 1.28365 1.19876 0.85703 0.80212 0.78230 0.78059 1.20117 1.21194 1.19526 1.23012 0.89870 0.95342 0.99419 0.87271 0.89156 0.86740 0.74711 0.90907 0.89742 0.91296 0.91173 0.92528 0.91180 0.92147 0.98027 0.98937 0.93268 0.91593 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 10.32 71.23 0.74 -1.31 16 2 C 0.50 11.94 7.94 87.66 0.70 12.63 16 3 O -0.60 -20.53 16.83 -3.04 -0.05 -20.58 16 4 N -0.71 -15.80 5.23 -435.99 -2.28 -18.08 16 5 C 0.14 4.04 3.31 46.38 0.15 4.19 16 6 H 0.07 2.49 7.73 -2.39 -0.02 2.47 16 7 C -0.13 -3.43 6.64 31.77 0.21 -3.22 16 8 C 0.04 1.20 6.25 86.64 0.54 1.74 16 9 N -0.53 -19.45 4.88 -860.37 -4.20 -23.64 16 10 C 0.09 3.45 2.14 44.92 0.10 3.55 16 11 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 12 C -0.17 -5.25 8.53 71.98 0.61 -4.64 16 13 C 0.04 1.83 4.36 29.85 0.13 1.96 16 14 C -0.50 -28.43 8.82 25.60 0.23 -28.20 16 15 H 0.05 3.04 7.75 -2.91 -0.02 3.02 16 16 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 17 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 18 Si 0.95 45.75 29.54 68.60 2.03 47.77 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 C 0.05 1.75 4.80 86.77 0.42 2.17 16 23 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.09 1.19 8.12 -2.38 -0.02 1.17 16 25 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.42 6.71 8.52 -92.71 -0.79 5.92 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 1.83 6.30 -2.38 -0.02 1.81 16 31 H 0.06 1.67 6.18 -2.38 -0.01 1.65 16 32 H 0.07 1.75 6.41 -2.39 -0.02 1.73 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.00 0.07 7.10 -2.39 -0.02 0.06 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.07 2.03 5.31 -2.39 -0.01 2.02 16 38 H 0.05 2.17 8.11 -2.39 -0.02 2.15 16 Total: -1.00 -71.56 304.61 0.32 -71.24 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.25 Total: 10.67 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 4.28 Total: -10.73 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -6.19 Total: -98.37 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.05 Total: -20.58 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -71.56 0.32 -71.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583148892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.224 kcal (2) G-P(sol) polarization free energy of solvation -71.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds