Wall clock time and date at job start Mon Mar 30 2020 17:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 119.99783 * 2 1 4 4 N 1.34778 * 120.00005 * 179.97438 * 2 1 3 5 5 C 1.46498 * 119.99787 * 180.02562 * 4 2 1 6 6 H 1.08996 * 110.35174 * 327.13610 * 5 4 2 7 7 C 1.54588 * 110.31303 * 89.28138 * 5 4 2 8 8 C 1.54941 * 102.92298 * 96.95854 * 7 5 4 9 9 N 1.48533 * 103.22952 * 37.41146 * 8 7 5 10 10 C 1.46892 * 111.00260 * 200.28070 * 9 8 7 11 11 H 1.09004 * 109.47338 * 60.53903 * 10 9 8 12 12 C 1.53002 * 109.46989 * 180.53231 * 10 9 8 13 13 C 1.52993 * 109.47300 * 300.53333 * 10 9 8 14 14 C 1.50703 * 109.47357 * 174.41552 * 13 10 9 15 15 H 1.08006 * 119.99678 * 4.29105 * 14 13 10 16 16 C 1.37880 * 120.00223 * 184.28645 * 14 13 10 17 17 N 1.31514 * 119.99454 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99831 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47096 * 60.00333 * 18 16 14 20 20 H 1.48506 * 109.46891 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47325 * 300.00101 * 18 16 14 22 22 C 1.47906 * 105.81759 * 320.79809 * 9 8 7 23 23 H 1.09003 * 109.47139 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47209 * 300.00189 * 1 2 3 25 25 H 1.08999 * 109.47419 * 60.00359 * 1 2 3 26 26 H 0.97003 * 119.99801 * 359.97438 * 4 2 1 27 27 H 1.08998 * 110.72410 * 215.31237 * 7 5 4 28 28 H 1.08996 * 110.72772 * 338.60287 * 7 5 4 29 29 H 1.09000 * 110.66649 * 278.98285 * 8 7 5 30 30 H 1.08999 * 110.67077 * 155.84848 * 8 7 5 31 31 H 1.08999 * 109.47526 * 300.00162 * 12 10 9 32 32 H 1.09005 * 109.46920 * 60.00553 * 12 10 9 33 33 H 1.09005 * 109.47348 * 179.97438 * 12 10 9 34 34 H 1.08995 * 109.47508 * 294.42169 * 13 10 9 35 35 H 1.09004 * 109.47071 * 54.42080 * 13 10 9 36 36 H 0.97001 * 119.99112 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.91662 * 265.96905 * 22 9 8 38 38 H 1.09004 * 109.91748 * 144.67886 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0251 -0.3089 -0.5535 7 6 4.1820 -1.1486 1.4509 8 6 4.4738 -2.6442 1.7316 9 7 4.9967 -3.1382 0.4321 10 6 4.8826 -4.5998 0.3401 11 1 3.8343 -4.8882 0.4184 12 6 5.4422 -5.0714 -1.0036 13 6 5.6757 -5.2459 1.4778 14 6 5.4481 -6.7356 1.4661 15 1 4.8587 -7.1856 0.6808 16 6 5.9923 -7.5240 2.4577 17 7 6.7096 -6.9758 3.4140 18 14 5.7108 -9.3705 2.4427 19 1 6.2581 -9.9445 1.1872 20 1 6.3967 -9.9853 3.6076 21 1 4.2545 -9.6499 2.5210 22 6 4.1805 -2.4762 -0.6087 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6958 -2.0073 0.0013 27 1 5.0960 -0.5584 1.5167 28 1 3.4255 -0.7680 2.1371 29 1 3.5586 -3.1704 2.0030 30 1 5.2256 -2.7493 2.5138 31 1 4.8772 -4.6112 -1.8142 32 1 6.4905 -4.7831 -1.0819 33 1 5.3580 -6.1561 -1.0717 34 1 6.7374 -5.0394 1.3436 35 1 5.3434 -4.8351 2.4312 36 1 7.0928 -7.5305 4.1114 37 1 3.3485 -3.1203 -0.8936 38 1 4.7976 -2.2553 -1.4797 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583148893.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:56 Heat of formation + Delta-G solvation = -68.010676 kcal Electronic energy + Delta-G solvation = -17558.552979 eV Core-core repulsion = 14820.382557 eV Total energy + Delta-G solvation = -2738.170422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12945 -39.66164 -36.54673 -34.89439 -33.60649 -31.01734 -30.48243 -28.74599 -28.35501 -25.32182 -23.09219 -22.18964 -21.29194 -20.65262 -18.63471 -17.93037 -17.54256 -16.80592 -16.50523 -16.04785 -15.61657 -15.32663 -14.76598 -14.48680 -14.11722 -14.03691 -13.51220 -13.33882 -13.22760 -13.08754 -12.85287 -12.69725 -12.68708 -12.52928 -12.28740 -12.14684 -11.89463 -11.73781 -11.18956 -11.03787 -10.94421 -10.52099 -10.13004 -9.28466 -8.16913 -6.26851 1.41509 1.44010 1.51660 1.63777 2.24156 2.42314 3.15085 3.18099 3.53776 3.71715 3.97064 4.08092 4.30042 4.33104 4.40376 4.46447 4.50877 4.67663 4.67909 4.69734 4.83069 4.94600 5.00205 5.05535 5.08205 5.12846 5.23968 5.42018 5.48000 5.52446 5.68800 5.80656 6.04291 6.18503 6.36825 6.56202 6.89717 7.25099 7.41732 8.95082 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040225 B = 0.004714 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.921280 B = 5937.926440 C = 5958.433336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.505 3.495 3 O -0.600 6.600 4 N -0.713 5.713 5 C 0.138 3.862 6 H 0.090 0.910 7 C -0.121 4.121 8 C 0.044 3.956 9 N -0.525 5.525 10 C 0.089 3.911 11 H 0.030 0.970 12 C -0.123 4.123 13 C 0.040 3.960 14 C -0.533 4.533 15 H 0.064 0.936 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.961 3.039 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.037 3.963 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.412 0.588 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.054 0.946 34 H -0.014 1.014 35 H -0.006 1.006 36 H 0.262 0.738 37 H 0.062 0.938 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.562 9.316 -8.148 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.295 3.705 3 O -0.481 6.481 4 N -0.366 5.366 5 C 0.032 3.968 6 H 0.108 0.892 7 C -0.160 4.160 8 C -0.084 4.084 9 N -0.250 5.250 10 C -0.019 4.019 11 H 0.048 0.952 12 C -0.180 4.180 13 C 0.003 3.997 14 C -0.571 4.571 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.786 3.214 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.091 4.091 23 H 0.120 0.880 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.250 0.750 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.004 0.996 35 H 0.013 0.987 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.492 10.113 -8.080 17.310 hybrid contribution -0.580 -1.596 0.668 1.825 sum -12.072 8.516 -7.412 16.529 Atomic orbital electron populations 1.21878 0.88109 1.06240 1.06019 1.21624 0.92296 0.82706 0.73905 1.90700 1.72119 1.33083 1.52185 1.46317 1.06475 1.09424 1.74407 1.21658 0.80437 0.98521 0.96155 0.89177 1.22823 1.01505 0.95283 0.96435 1.23066 0.97884 0.94719 0.92720 1.64822 1.51141 1.06316 1.02716 1.21756 0.97279 0.85701 0.97208 0.95165 1.21645 1.00590 1.00810 0.94986 1.18966 0.93933 0.94198 0.92630 1.21584 1.32115 0.93450 1.09975 0.91792 1.25928 0.94927 1.03700 0.95128 1.70112 1.35616 1.37412 1.14275 0.85556 0.78672 0.79452 0.77702 1.19176 1.21253 1.19096 1.23142 0.96578 0.93510 0.95898 0.87997 0.88089 0.87708 0.75046 0.90300 0.90696 0.94245 0.92173 0.91536 0.93632 0.92735 0.99592 0.98733 0.92965 0.91979 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.39 71.24 0.74 -1.12 16 2 C 0.51 10.84 7.94 87.66 0.70 11.53 16 3 O -0.60 -18.76 16.75 -3.04 -0.05 -18.81 16 4 N -0.71 -14.13 5.06 -438.39 -2.22 -16.35 16 5 C 0.14 3.41 3.34 45.87 0.15 3.56 16 6 H 0.09 2.40 7.56 -2.39 -0.02 2.38 16 7 C -0.12 -3.36 6.78 31.80 0.22 -3.14 16 8 C 0.04 1.48 5.39 86.65 0.47 1.95 16 9 N -0.52 -18.16 5.11 -857.85 -4.38 -22.54 16 10 C 0.09 3.53 1.78 44.92 0.08 3.61 16 11 H 0.03 1.20 7.99 -2.38 -0.02 1.18 16 12 C -0.12 -4.38 8.96 71.98 0.65 -3.74 16 13 C 0.04 2.09 4.41 29.85 0.13 2.22 16 14 C -0.53 -29.40 8.49 25.60 0.22 -29.18 16 15 H 0.06 3.33 6.95 -2.91 -0.02 3.31 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 18 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 C 0.04 0.95 5.26 86.45 0.45 1.41 16 23 H 0.10 0.64 7.91 -2.39 -0.02 0.62 16 24 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.41 6.17 8.17 -92.71 -0.76 5.41 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 29 H 0.04 1.33 8.00 -2.39 -0.02 1.31 16 30 H 0.06 2.33 7.53 -2.39 -0.02 2.31 16 31 H 0.07 1.88 7.25 -2.39 -0.02 1.87 16 32 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.05 2.05 6.90 -2.38 -0.02 2.04 16 34 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H -0.01 -0.32 6.64 -2.38 -0.02 -0.34 16 36 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.06 1.44 7.11 -2.39 -0.02 1.42 16 38 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -69.87 306.48 0.20 -69.67 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.28 Total: 11.27 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 4.26 Total: -12.38 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -6.31 Total: -95.29 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -69.87 0.20 -69.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583148893.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.663 kcal (2) G-P(sol) polarization free energy of solvation -69.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds