Wall clock time and date at job start Mon Mar 30 2020 17:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.46894 * 2 1 4 4 C 1.53001 * 109.47119 * 240.00427 * 2 1 3 5 5 C 1.50704 * 109.47024 * 65.50227 * 4 2 1 6 6 H 1.08001 * 119.99993 * 5.54327 * 5 4 2 7 7 C 1.37878 * 120.00059 * 185.54730 * 5 4 2 8 8 N 1.31511 * 120.00306 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99733 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47333 * 90.00309 * 9 7 5 11 11 H 1.48501 * 109.47325 * 210.00156 * 9 7 5 12 12 H 1.48500 * 109.47343 * 329.99992 * 9 7 5 13 13 N 1.46889 * 109.47465 * 120.00432 * 2 1 3 14 14 C 1.47904 * 111.00263 * 179.74978 * 13 2 1 15 15 C 1.53993 * 107.05700 * 145.84518 * 14 13 2 16 16 C 1.54598 * 105.14419 * 358.77125 * 15 14 13 17 17 H 1.09002 * 110.72025 * 96.57774 * 16 15 14 18 18 C 1.52993 * 110.73118 * 219.68770 * 16 15 14 19 19 C 1.50706 * 109.46738 * 293.54838 * 18 16 15 20 20 N 1.34782 * 119.99601 * 179.97438 * 19 18 16 21 21 O 1.21278 * 120.00222 * 359.97438 * 19 18 16 22 22 C 1.48532 * 110.99976 * 297.14755 * 13 2 1 23 23 H 1.08998 * 109.47070 * 299.99614 * 1 2 3 24 24 H 1.09000 * 109.47466 * 59.99685 * 1 2 3 25 25 H 1.08996 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47575 * 185.50086 * 4 2 1 27 27 H 1.08999 * 109.46910 * 305.50460 * 4 2 1 28 28 H 0.96998 * 120.00352 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.91649 * 26.49319 * 14 13 2 30 30 H 1.08995 * 109.91693 * 265.19532 * 14 13 2 31 31 H 1.09003 * 110.30652 * 239.86224 * 15 14 13 32 32 H 1.08997 * 110.31233 * 117.69342 * 15 14 13 33 33 H 1.08995 * 109.47596 * 173.55117 * 18 16 15 34 34 H 1.08996 * 109.46994 * 53.54132 * 18 16 15 35 35 H 0.96998 * 120.00061 * 359.97438 * 20 19 18 36 36 H 0.96997 * 119.99493 * 179.72689 * 20 19 18 37 37 H 1.09003 * 110.67263 * 81.84267 * 22 13 2 38 38 H 1.08999 * 110.66615 * 318.71046 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6519 0.0637 -2.4759 6 1 1.1765 1.0278 -2.3721 7 6 1.9037 -0.4492 -3.7308 8 7 1.5656 0.2358 -4.8012 9 14 2.7265 -2.1166 -3.9103 10 1 1.6891 -3.1782 -3.9566 11 1 3.5198 -2.1447 -5.1654 12 1 3.6249 -2.3526 -2.7517 13 7 2.0196 -0.6925 1.1993 14 6 3.4981 -0.7175 1.2304 15 6 3.9206 -0.6161 2.7078 16 6 2.5975 -0.5011 3.4992 17 1 2.2882 -1.4756 3.8771 18 6 2.7377 0.5023 4.6456 19 6 3.7128 -0.0310 5.6634 20 7 3.9956 0.6888 6.7673 21 8 4.2430 -1.1077 5.4893 22 6 1.6006 0.0196 2.4335 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1255 -0.8073 -1.2015 27 1 1.5983 -1.7164 -1.3000 28 1 1.7431 -0.1248 -5.6840 29 1 3.8956 0.1297 0.6716 30 1 3.8628 -1.6516 0.8032 31 1 4.5341 0.2710 2.8658 32 1 4.4645 -1.5116 3.0081 33 1 1.7666 0.6533 5.1171 34 1 3.1034 1.4517 4.2548 35 1 3.5718 1.5502 6.9064 36 1 4.6202 0.3438 7.4243 37 1 0.5778 -0.2449 2.7019 38 1 1.7000 1.0978 2.3082 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593029963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:07 Heat of formation + Delta-G solvation = -51.837531 kcal Electronic energy + Delta-G solvation = -17526.320479 eV Core-core repulsion = 14788.851377 eV Total energy + Delta-G solvation = -2737.469102 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97230 -38.53377 -34.77563 -33.88733 -32.44434 -30.85670 -29.10466 -26.99840 -26.60240 -22.97807 -21.33421 -21.07283 -19.90087 -18.87884 -17.49936 -16.94198 -16.78253 -15.98854 -15.07112 -14.72148 -14.35232 -13.93269 -13.55203 -13.37814 -12.99521 -12.61172 -12.31874 -12.16307 -11.79624 -11.54579 -11.21129 -10.82221 -10.78551 -10.70827 -10.68143 -10.35542 -10.05476 -9.94856 -9.91126 -9.74894 -9.49009 -9.12009 -8.48919 -7.83336 -6.00982 -3.98170 2.47183 3.30303 3.36072 3.43045 3.49283 4.39529 4.50186 4.61008 4.77750 4.94246 5.10356 5.33726 5.37877 5.42457 5.49969 5.64965 5.86890 5.92963 5.98201 6.04707 6.15371 6.30344 6.34482 6.39373 6.51946 6.56778 6.65714 6.82253 7.06719 7.07653 7.21717 7.37123 7.55006 7.68816 7.92311 8.06411 8.57045 9.03033 9.62251 11.12243 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045987 B = 0.004873 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.723635 B = 5744.169384 C = 6089.430710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.086 3.914 3 H 0.034 0.966 4 C -0.003 4.003 5 C -0.516 4.516 6 H 0.072 0.928 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.516 5.516 14 C 0.038 3.962 15 C -0.118 4.118 16 C -0.076 4.076 17 H 0.088 0.912 18 C -0.135 4.135 19 C 0.515 3.485 20 N -0.862 5.862 21 O -0.536 6.536 22 C 0.041 3.959 23 H 0.032 0.968 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.014 0.986 27 H 0.020 0.980 28 H 0.262 0.738 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.400 0.600 36 H 0.398 0.602 37 H 0.078 0.922 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.373 2.640 21.654 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 H 0.052 0.948 4 C -0.041 4.041 5 C -0.554 4.554 6 H 0.090 0.910 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.707 3.293 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.241 5.241 14 C -0.090 4.090 15 C -0.156 4.156 16 C -0.096 4.096 17 H 0.107 0.893 18 C -0.175 4.175 19 C 0.301 3.699 20 N -0.426 5.426 21 O -0.412 6.412 22 C -0.087 4.087 23 H 0.051 0.949 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.228 0.772 36 H 0.229 0.771 37 H 0.096 0.904 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.400 1.390 21.113 21.294 hybrid contribution 0.812 0.396 0.102 0.909 sum 3.212 1.786 21.215 21.531 Atomic orbital electron populations 1.21714 0.94852 1.01621 1.00524 1.21805 0.95439 0.95211 0.89703 0.94829 1.19614 0.95968 0.96298 0.92235 1.21087 1.39731 1.05566 0.89030 0.91023 1.24982 0.95193 0.97320 0.95856 1.69909 1.48179 1.38422 0.97908 0.86784 0.80184 0.84881 0.77495 1.20248 1.21562 1.19015 1.64826 1.08015 1.49314 1.01909 1.22815 0.89069 1.01645 0.95511 1.22430 0.96673 1.02100 0.94412 1.21844 0.96149 0.98544 0.93053 0.89347 1.21742 0.99142 1.00801 0.95813 1.20814 0.82269 0.84627 0.82221 1.43955 1.49822 1.24296 1.24561 1.90757 1.52184 1.21645 1.76577 1.23218 0.98776 0.96218 0.90528 0.94875 0.91106 0.92780 0.96771 0.96136 0.92797 0.93612 0.90693 0.92497 0.90629 0.88676 0.88793 0.77187 0.77129 0.90379 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.93 37.15 0.33 -2.15 16 2 C 0.09 1.77 1.76 -67.72 -0.12 1.65 16 3 H 0.03 0.72 8.00 -51.93 -0.42 0.30 16 4 C 0.00 -0.08 3.50 -27.88 -0.10 -0.18 16 5 C -0.52 -14.71 8.86 -34.44 -0.31 -15.01 16 6 H 0.07 2.18 7.55 -52.49 -0.40 1.78 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 9 Si 0.88 22.32 27.36 -169.99 -4.65 17.67 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.57 6.70 56.52 0.38 -6.19 16 13 N -0.52 -9.28 5.11 -222.51 -1.14 -10.41 16 14 C 0.04 0.65 5.33 -2.75 -0.01 0.63 16 15 C -0.12 -1.68 5.48 -25.37 -0.14 -1.82 16 16 C -0.08 -0.96 2.66 -88.76 -0.24 -1.20 16 17 H 0.09 1.22 8.04 -51.93 -0.42 0.81 16 18 C -0.13 -1.20 5.10 -27.88 -0.14 -1.34 16 19 C 0.52 5.23 7.89 -10.98 -0.09 5.15 16 20 N -0.86 -5.17 8.87 31.22 0.28 -4.89 16 21 O -0.54 -7.89 15.73 5.56 0.09 -7.80 16 22 C 0.04 0.57 4.97 -1.90 -0.01 0.56 16 23 H 0.03 0.53 7.01 -51.93 -0.36 0.17 16 24 H 0.07 1.48 7.10 -51.93 -0.37 1.11 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.01 0.35 6.28 -51.93 -0.33 0.03 16 27 H 0.02 0.52 7.26 -51.93 -0.38 0.14 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.05 0.82 7.54 -51.93 -0.39 0.43 16 30 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 31 H 0.06 0.75 7.80 -51.93 -0.41 0.34 16 32 H 0.07 1.14 7.73 -51.93 -0.40 0.74 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.40 1.15 8.83 -40.82 -0.36 0.79 16 36 H 0.40 2.11 8.93 -40.82 -0.36 1.75 16 37 H 0.08 1.03 7.68 -51.93 -0.40 0.63 16 38 H 0.04 0.55 7.87 -51.93 -0.41 0.14 16 LS Contribution 300.30 15.07 4.53 4.53 Total: -1.00 -33.82 300.30 -7.28 -41.10 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.24 Total: -1.07 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -0.92 Total: -11.82 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -0.09 Total: -42.60 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.65 Total: 17.67 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.82 -7.28 -41.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593029963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.734 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds