Wall clock time and date at job start Mon Mar 30 2020 17:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.46894 * 2 1 4 4 C 1.53001 * 109.47119 * 240.00427 * 2 1 3 5 5 C 1.50704 * 109.47024 * 65.50227 * 4 2 1 6 6 H 1.08001 * 119.99993 * 5.54327 * 5 4 2 7 7 C 1.37878 * 120.00059 * 185.54730 * 5 4 2 8 8 N 1.31511 * 120.00306 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99733 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47333 * 90.00309 * 9 7 5 11 11 H 1.48501 * 109.47325 * 210.00156 * 9 7 5 12 12 H 1.48500 * 109.47343 * 329.99992 * 9 7 5 13 13 N 1.46889 * 109.47465 * 120.00432 * 2 1 3 14 14 C 1.47904 * 111.00263 * 179.74978 * 13 2 1 15 15 C 1.53993 * 107.05700 * 145.84518 * 14 13 2 16 16 C 1.54598 * 105.14419 * 358.77125 * 15 14 13 17 17 H 1.09002 * 110.72025 * 96.57774 * 16 15 14 18 18 C 1.52993 * 110.73118 * 219.68770 * 16 15 14 19 19 C 1.50706 * 109.46738 * 293.54838 * 18 16 15 20 20 N 1.34782 * 119.99601 * 179.97438 * 19 18 16 21 21 O 1.21278 * 120.00222 * 359.97438 * 19 18 16 22 22 C 1.48532 * 110.99976 * 297.14755 * 13 2 1 23 23 H 1.08998 * 109.47070 * 299.99614 * 1 2 3 24 24 H 1.09000 * 109.47466 * 59.99685 * 1 2 3 25 25 H 1.08996 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47575 * 185.50086 * 4 2 1 27 27 H 1.08999 * 109.46910 * 305.50460 * 4 2 1 28 28 H 0.96998 * 120.00352 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.91649 * 26.49319 * 14 13 2 30 30 H 1.08995 * 109.91693 * 265.19532 * 14 13 2 31 31 H 1.09003 * 110.30652 * 239.86224 * 15 14 13 32 32 H 1.08997 * 110.31233 * 117.69342 * 15 14 13 33 33 H 1.08995 * 109.47596 * 173.55117 * 18 16 15 34 34 H 1.08996 * 109.46994 * 53.54132 * 18 16 15 35 35 H 0.96998 * 120.00061 * 359.97438 * 20 19 18 36 36 H 0.96997 * 119.99493 * 179.72689 * 20 19 18 37 37 H 1.09003 * 110.67263 * 81.84267 * 22 13 2 38 38 H 1.08999 * 110.66615 * 318.71046 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6519 0.0637 -2.4759 6 1 1.1765 1.0278 -2.3721 7 6 1.9037 -0.4492 -3.7308 8 7 1.5656 0.2358 -4.8012 9 14 2.7265 -2.1166 -3.9103 10 1 1.6891 -3.1782 -3.9566 11 1 3.5198 -2.1447 -5.1654 12 1 3.6249 -2.3526 -2.7517 13 7 2.0196 -0.6925 1.1993 14 6 3.4981 -0.7175 1.2304 15 6 3.9206 -0.6161 2.7078 16 6 2.5975 -0.5011 3.4992 17 1 2.2882 -1.4756 3.8771 18 6 2.7377 0.5023 4.6456 19 6 3.7128 -0.0310 5.6634 20 7 3.9956 0.6888 6.7673 21 8 4.2430 -1.1077 5.4893 22 6 1.6006 0.0196 2.4335 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1255 -0.8073 -1.2015 27 1 1.5983 -1.7164 -1.3000 28 1 1.7431 -0.1248 -5.6840 29 1 3.8956 0.1297 0.6716 30 1 3.8628 -1.6516 0.8032 31 1 4.5341 0.2710 2.8658 32 1 4.4645 -1.5116 3.0081 33 1 1.7666 0.6533 5.1171 34 1 3.1034 1.4517 4.2548 35 1 3.5718 1.5502 6.9064 36 1 4.6202 0.3438 7.4243 37 1 0.5778 -0.2449 2.7019 38 1 1.7000 1.0978 2.3082 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593029963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:07 Heat of formation + Delta-G solvation = -78.812683 kcal Electronic energy + Delta-G solvation = -17527.490209 eV Core-core repulsion = 14788.851377 eV Total energy + Delta-G solvation = -2738.638833 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90841 -39.71821 -36.33031 -34.59160 -34.41218 -32.15760 -30.67212 -28.61940 -27.73574 -24.79179 -22.75956 -21.98688 -21.03055 -20.31666 -19.07906 -18.15339 -17.57135 -17.08126 -16.47625 -16.16423 -15.81241 -15.36502 -14.99453 -14.68208 -14.46147 -14.07985 -13.67158 -13.51895 -13.26232 -12.97428 -12.91174 -12.56828 -12.31695 -11.98423 -11.86685 -11.77295 -11.61848 -11.48133 -11.35141 -11.17238 -10.86996 -10.75025 -10.56058 -9.25474 -8.29064 -6.30943 1.34261 1.35328 1.48047 1.74529 2.35560 2.67352 3.06577 3.13640 3.70362 3.77831 3.94340 4.21819 4.25378 4.31793 4.38736 4.52541 4.64685 4.66274 4.72611 4.78616 4.88235 4.99004 5.03438 5.12134 5.18631 5.23928 5.28797 5.36365 5.43423 5.54702 5.66041 5.98006 6.07718 6.24906 6.34948 6.55608 6.75392 7.33007 7.45161 8.87273 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045987 B = 0.004873 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.723635 B = 5744.169384 C = 6089.430710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.094 3.906 3 H 0.024 0.976 4 C 0.002 3.998 5 C -0.519 4.519 6 H 0.039 0.961 7 C 0.010 3.990 8 N -0.948 5.948 9 Si 0.943 3.057 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.257 1.257 13 N -0.528 5.528 14 C 0.035 3.965 15 C -0.109 4.109 16 C -0.069 4.069 17 H 0.075 0.925 18 C -0.127 4.127 19 C 0.512 3.488 20 N -0.841 5.841 21 O -0.591 6.591 22 C 0.041 3.959 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.009 0.991 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.418 0.582 36 H 0.404 0.596 37 H 0.093 0.907 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 2.752 24.062 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.015 4.015 3 H 0.042 0.958 4 C -0.036 4.036 5 C -0.557 4.557 6 H 0.058 0.942 7 C -0.187 4.187 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.181 1.181 13 N -0.252 5.252 14 C -0.093 4.093 15 C -0.147 4.147 16 C -0.088 4.088 17 H 0.093 0.907 18 C -0.167 4.167 19 C 0.298 3.702 20 N -0.405 5.405 21 O -0.471 6.471 22 C -0.086 4.086 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.028 0.972 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.249 0.751 36 H 0.235 0.765 37 H 0.111 0.889 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.359 1.551 23.575 23.744 hybrid contribution 0.802 0.452 -0.595 1.097 sum 3.162 2.003 22.980 23.283 Atomic orbital electron populations 1.21617 0.93717 1.01642 1.01007 1.21557 0.96290 0.94164 0.89441 0.95849 1.19506 0.95599 0.95759 0.92723 1.21348 1.38832 1.04716 0.90813 0.94232 1.25852 0.96005 1.01295 0.95551 1.70039 1.49846 1.40482 0.98570 0.85760 0.79467 0.80164 0.77864 1.19264 1.20826 1.18059 1.64754 1.08419 1.49770 1.02289 1.22811 0.88804 1.00279 0.97429 1.22337 0.97779 1.02134 0.92486 1.21739 0.94255 0.99127 0.93710 0.90696 1.21709 1.00668 1.00061 0.94302 1.21044 0.81995 0.84084 0.83096 1.43777 1.49016 1.24508 1.23240 1.90749 1.54342 1.24057 1.77928 1.23331 0.99853 0.96622 0.88782 0.91288 0.93701 0.92923 0.97230 0.96655 0.92527 0.94812 0.92307 0.91186 0.91876 0.85503 0.86798 0.75057 0.76503 0.88921 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 8.93 71.98 0.64 -3.91 16 2 C 0.09 3.81 1.76 44.92 0.08 3.89 16 3 H 0.02 1.00 8.00 -2.39 -0.02 0.98 16 4 C 0.00 0.09 3.50 29.85 0.10 0.20 16 5 C -0.52 -30.27 8.86 25.60 0.23 -30.04 16 6 H 0.04 2.50 7.55 -2.91 -0.02 2.48 16 7 C 0.01 0.59 5.47 84.66 0.46 1.05 16 8 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 9 Si 0.94 46.26 27.36 68.60 1.88 48.14 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.26 -12.10 6.70 99.48 0.67 -11.44 16 13 N -0.53 -18.29 5.11 -857.90 -4.38 -22.67 16 14 C 0.03 1.18 5.33 86.45 0.46 1.64 16 15 C -0.11 -2.98 5.48 31.47 0.17 -2.80 16 16 C -0.07 -1.56 2.66 -9.59 -0.03 -1.59 16 17 H 0.07 1.94 8.04 -2.39 -0.02 1.92 16 18 C -0.13 -1.78 5.10 29.85 0.15 -1.63 16 19 C 0.51 9.02 7.89 87.66 0.69 9.71 16 20 N -0.84 -7.39 8.87 -173.52 -1.54 -8.93 16 21 O -0.59 -16.68 15.73 -3.02 -0.05 -16.73 16 22 C 0.04 1.04 4.97 86.65 0.43 1.48 16 23 H 0.07 2.05 7.01 -2.39 -0.02 2.03 16 24 H 0.04 1.88 7.10 -2.39 -0.02 1.87 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.01 0.47 6.28 -2.39 -0.01 0.46 16 27 H 0.02 0.76 7.26 -2.39 -0.02 0.74 16 28 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 29 H 0.03 1.20 7.54 -2.39 -0.02 1.19 16 30 H 0.06 2.13 8.09 -2.39 -0.02 2.11 16 31 H 0.07 1.71 7.80 -2.39 -0.02 1.69 16 32 H 0.06 1.89 7.73 -2.39 -0.02 1.87 16 33 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.21 8.07 -2.39 -0.02 1.19 16 35 H 0.42 0.74 8.83 -92.71 -0.82 -0.08 16 36 H 0.40 3.21 8.93 -92.71 -0.83 2.38 16 37 H 0.09 2.10 7.68 -2.39 -0.02 2.08 16 38 H 0.05 1.24 7.87 -2.39 -0.02 1.22 16 Total: -1.00 -75.06 300.30 -1.03 -76.08 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -0.63 Total: 5.88 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 3.40 Total: -22.00 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -5.62 Total: -91.37 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.05 Total: -16.73 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.14 kcal Total: -75.06 -1.03 -76.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593029963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.728 kcal (2) G-P(sol) polarization free energy of solvation -75.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds